Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:07:43 (8787): wrapper (7.7.26015): starting
17:07:43 (8787): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 17:07:43] Arguments: --nthreads 8
[2025-05-27 17:07:43] Threads: 8
[2025-05-27 17:07:43] Checking for CVMFS
[2025-05-27 17:07:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 17:07:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 17:07:44] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 17:07:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 17:07:45] 2.11.2.0 18345 21943 96488 146483 3 16 16470260 25165824 4627 130560 0 12089633 99.820 13855682 1653 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 17:07:45] CVMFS is ok
[2025-05-27 17:07:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 17:07:45] Checking for apptainer binary...
[2025-05-27 17:07:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 17:07:45] Running /usr/bin/apptainer --version
[2025-05-27 17:07:46] apptainer version 1.3.2-1.el7
[2025-05-27 17:07:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 17:07:59] cg-vwn239.simple-grid.lan
[2025-05-27 17:07:59] apptainer works
[2025-05-27 17:07:59] Set ATHENA_PROC_NUMBER=8
[2025-05-27 17:07:59] Set ATHENA_CORE_NUMBER=8
[2025-05-27 17:07:59] Starting ATLAS job with PandaID=6666242070
[2025-05-27 17:07:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 22:47:01]  *** The last 200 lines of the pilot log: ***
[2025-05-27 22:47:01] 2025-05-27 20:38:56,003 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6666242070/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,004 | INFO     | extracted standard info from prmon json
[2025-05-27 22:47:01] 2025-05-27 20:38:56,004 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 22:47:01] 2025-05-27 20:38:56,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 22:47:01] 2025-05-27 20:38:56,005 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 22:47:01] 2025-05-27 20:38:56,005 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 22:47:01] 2025-05-27 20:38:56,011 | INFO     | fitting pss+swap vs Time
[2025-05-27 22:47:01] 2025-05-27 20:38:56,012 | INFO     | sum of square deviations: 9417545878.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,015 | INFO     | sum of deviations: 104021202149.00003
[2025-05-27 22:47:01] 2025-05-27 20:38:56,015 | INFO     | mean x: 1748368707.5
[2025-05-27 22:47:01] 2025-05-27 20:38:56,016 | INFO     | mean y: 2460041.673076923
[2025-05-27 22:47:01] 2025-05-27 20:38:56,016 | INFO     | -- intersect: -19309090664.83291
[2025-05-27 22:47:01] 2025-05-27 20:38:56,016 | INFO     | intersect: -19309090664.83291
[2025-05-27 22:47:01] 2025-05-27 20:38:56,016 | INFO     | chi2: 7.879939186267079
[2025-05-27 22:47:01] 2025-05-27 20:38:56,017 | INFO     | sum of square deviations: 8971993338.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,020 | INFO     | sum of deviations: 123051680747.99997
[2025-05-27 22:47:01] 2025-05-27 20:38:56,020 | INFO     | mean x: 1748368555.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,020 | INFO     | mean y: 2466463.0325732897
[2025-05-27 22:47:01] 2025-05-27 20:38:56,020 | INFO     | -- intersect: -23976562628.36219
[2025-05-27 22:47:01] 2025-05-27 20:38:56,020 | INFO     | intersect: -23976562628.36219
[2025-05-27 22:47:01] 2025-05-27 20:38:56,021 | INFO     | chi2: 7.163200997080893
[2025-05-27 22:47:01] 2025-05-27 20:38:56,021 | INFO     | current chi2=7.163200997080893 (change=9.09573249543976 %)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,021 | INFO     | right removable region: 306
[2025-05-27 22:47:01] 2025-05-27 20:38:56,022 | INFO     | sum of square deviations: 8971993338.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,025 | INFO     | sum of deviations: -5335693789.999987
[2025-05-27 22:47:01] 2025-05-27 20:38:56,025 | INFO     | mean x: 1748368860.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,025 | INFO     | mean y: 2497449.713355049
[2025-05-27 22:47:01] 2025-05-27 20:38:56,025 | INFO     | -- intersect: 1042262027.9392775
[2025-05-27 22:47:01] 2025-05-27 20:38:56,025 | INFO     | intersect: 1042262027.9392775
[2025-05-27 22:47:01] 2025-05-27 20:38:56,026 | INFO     | chi2: 3.021008719924596
[2025-05-27 22:47:01] 2025-05-27 20:38:56,026 | INFO     | current chi2=3.021008719924596 (change=61.66203001681132 %)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,026 | INFO     | sum of square deviations: 8540720135.5
[2025-05-27 22:47:01] 2025-05-27 20:38:56,029 | INFO     | sum of deviations: -72610931265.50002
[2025-05-27 22:47:01] 2025-05-27 20:38:56,030 | INFO     | mean x: 1748369012.5
[2025-05-27 22:47:01] 2025-05-27 20:38:56,030 | INFO     | mean y: 2521163.182119205
[2025-05-27 22:47:01] 2025-05-27 20:38:56,030 | INFO     | -- intersect: 14866689544.685415
[2025-05-27 22:47:01] 2025-05-27 20:38:56,030 | INFO     | intersect: 14866689544.685415
[2025-05-27 22:47:01] 2025-05-27 20:38:56,030 | INFO     | chi2: 1.050570200292126
[2025-05-27 22:47:01] 2025-05-27 20:38:56,031 | INFO     | current chi2=1.050570200292126 (change=65.22452274423266 %)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,031 | INFO     | sum of square deviations: 8123493708.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,034 | INFO     | sum of deviations: -77159934193.99998
[2025-05-27 22:47:01] 2025-05-27 20:38:56,034 | INFO     | mean x: 1748369165.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,034 | INFO     | mean y: 2522803.175084175
[2025-05-27 22:47:01] 2025-05-27 20:38:56,034 | INFO     | -- intersect: 16609176857.12794
[2025-05-27 22:47:01] 2025-05-27 20:38:56,035 | INFO     | intersect: 16609176857.12794
[2025-05-27 22:47:01] 2025-05-27 20:38:56,035 | INFO     | chi2: 1.0098577460261335
[2025-05-27 22:47:01] 2025-05-27 20:38:56,035 | INFO     | current chi2=1.0098577460261335 (change=3.875272138375121 %)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,035 | INFO     | left removable region: 30
[2025-05-27 22:47:01] 2025-05-27 20:38:56,036 | INFO     | sum of square deviations: 6519285025.0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,038 | INFO     | sum of deviations: -28373043490.5
[2025-05-27 22:47:01] 2025-05-27 20:38:56,038 | INFO     | mean x: 1748369439.5
[2025-05-27 22:47:01] 2025-05-27 20:38:56,039 | INFO     | mean y: 2519395.75
[2025-05-27 22:47:01] 2025-05-27 20:38:56,039 | INFO     | -- intersect: 7611722238.418259
[2025-05-27 22:47:01] 2025-05-27 20:38:56,039 | INFO     | intersect: 7611722238.418259
[2025-05-27 22:47:01] 2025-05-27 20:38:56,039 | INFO     | chi2: 0.16315867391983357
[2025-05-27 22:47:01] 2025-05-27 20:38:56,039 | INFO     | -- intersect: 7611722238.418259
[2025-05-27 22:47:01] 2025-05-27 20:38:56,040 | INFO     | current memory leak: -4.35 B/s (using 276 data points, chi2=0.16)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | ..............................
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . Timing measurements:
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . get job = 0 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . initial setup = 5 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . payload setup = 197 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . stage-in = 0 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . payload execution = 19184 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . stage-out = 3 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | . log creation = 1 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,041 | INFO     | ..............................
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | 
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | job summary report
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | --------------------------------------------------
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | PanDA job id: 6666242070
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | task id: 44871837
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | errors: (none)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 22:47:01] 2025-05-27 20:38:56,159 | INFO     | pilot state: finished 
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | transexitcode: 0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | exeerrorcode: 0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | exeerrordiag: 
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | exitcode: 0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | exitmsg: OK
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | cpuconsumptiontime: 71379 s
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | nevents: 400
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | neventsw: 0
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | pid: 28654
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | pgrp: 28654
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | corecount: 8
[2025-05-27 22:47:01] 2025-05-27 20:38:56,160 | INFO     | event service: False
[2025-05-27 22:47:01] 2025-05-27 20:38:56,161 | INFO     | sizes: {0: 2405007, 1: 2405262, 2: 2405262, 12: 2405290, 23: 2405318, 34: 2405346, 44: 2405502, 55: 2405530, 66: 2405558, 77: 2405586, 87: 2405642, 93: 2406156, 98
[2025-05-27 22:47:01] 2025-05-27 20:38:56,161 | INFO     | --------------------------------------------------
[2025-05-27 22:47:01] 2025-05-27 20:38:56,161 | INFO     | 
[2025-05-27 22:47:01] 2025-05-27 20:38:56,161 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-05-27 22:47:01] 2025-05-27 20:38:56,583 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 22:47:01] 2025-05-27 20:38:56,586 | INFO     | job 6666242070 has completed (purged errors)
[2025-05-27 22:47:01] 2025-05-27 20:38:56,586 | INFO     | overall cleanup function is called
[2025-05-27 22:47:01] 2025-05-27 20:38:57,595 | INFO     | --- collectZombieJob: --- 10, [28654]
[2025-05-27 22:47:01] 2025-05-27 20:38:57,595 | INFO     | zombie collector waiting for pid 28654
[2025-05-27 22:47:01] 2025-05-27 20:38:57,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 22:47:01] 2025-05-27 20:38:57,595 | INFO     | collected zombie processes
[2025-05-27 22:47:01] 2025-05-27 20:38:57,595 | INFO     | will attempt to kill all subprocesses of pid=28654
[2025-05-27 22:47:01] 2025-05-27 20:38:57,721 | INFO     | process IDs to be killed: [28654] (in reverse order)
[2025-05-27 22:47:01] 2025-05-27 20:38:58,646 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 22:47:01] 2025-05-27 20:38:58,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 22:47:01] 2025-05-27 20:38:58,650 | INFO     | did not find any defunct processes belonging to 28654
[2025-05-27 22:47:01] 2025-05-27 20:38:58,653 | INFO     | did not find any defunct processes belonging to 28654
[2025-05-27 22:47:01] 2025-05-27 20:38:58,653 | INFO     | ready for new job
[2025-05-27 22:47:01] 2025-05-27 20:38:58,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 22:47:01] 2025-05-27 20:38:58,655 | INFO     | **************************************
[2025-05-27 22:47:01] 2025-05-27 20:38:58,655 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 22:47:01] 2025-05-27 20:38:58,655 | INFO     | **************************************
[2025-05-27 22:47:01] 2025-05-27 20:38:58,656 | INFO     | 
[2025-05-27 22:47:01] 2025-05-27 20:38:58,656 | INFO     | pilot is running in a VM
[2025-05-27 22:47:01] 2025-05-27 20:38:58,656 | INFO     | architecture information:
[2025-05-27 22:47:01] 2025-05-27 20:38:58,670 | INFO     | executing command: cat /etc/os-release
[2025-05-27 22:47:01] 2025-05-27 20:38:58,971 | INFO     | cat /etc/os-release:
[2025-05-27 22:47:01] NAME="CentOS Linux"
[2025-05-27 22:47:01] VERSION="7 (Core)"
[2025-05-27 22:47:01] ID="centos"
[2025-05-27 22:47:01] ID_LIKE="rhel fedora"
[2025-05-27 22:47:01] VERSION_ID="7"
[2025-05-27 22:47:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 22:47:01] ANSI_COLOR="0;31"
[2025-05-27 22:47:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 22:47:01] HOME_URL="https://www.centos.org/"
[2025-05-27 22:47:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 22:47:01] 
[2025-05-27 22:47:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 22:47:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 22:47:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 22:47:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 22:47:01] 
[2025-05-27 22:47:01] 2025-05-27 20:38:58,971 | INFO     | **************************************
[2025-05-27 22:47:01] 2025-05-27 20:38:59,475 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-05-27 22:47:01] 2025-05-27 20:38:59,745 | INFO     | sufficient remaining disk space (494237908992 B)
[2025-05-27 22:47:01] 2025-05-27 20:38:59,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 22:47:01] 2025-05-27 20:38:59,746 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 22:47:01] 2025-05-27 20:38:59,746 | INFO     | update_server=False
[2025-05-27 22:47:01] 2025-05-27 20:38:59,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 22:47:01] 2025-05-27 20:38:59,770 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 22:47:01] 2025-05-27 20:38:59,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 22:47:01] 2025-05-27 20:38:59,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 22:47:01] 2025-05-27 20:39:00,024 | INFO     | all data control threads have been joined
[2025-05-27 22:47:01] 2025-05-27 20:39:00,399 | INFO     | all payload control threads have been joined
[2025-05-27 22:47:01] 2025-05-27 20:39:00,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 22:47:01] 2025-05-27 20:39:00,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 22:47:01] 2025-05-27 20:39:00,616 | INFO     | aborting loop
[2025-05-27 22:47:01] 2025-05-27 20:39:00,752 | INFO     | [job] retrieve thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:00,841 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,030 | INFO     | [data] control thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,102 | INFO     | [data] copytool_in thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,141 | INFO     | all job control threads have been joined
[2025-05-27 22:47:01] 2025-05-27 20:39:01,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 22:47:01] 2025-05-27 20:39:01,255 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,394 | INFO     | [payload] failed_post thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,405 | INFO     | [payload] control thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,430 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,515 | INFO     | [payload] validate_post thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,622 | INFO     | [job] job monitor thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,811 | INFO     | [job] validate thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:01,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:02,147 | INFO     | [job] control thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:02,182 | INFO     | [job] queue monitor thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:02,467 | INFO     | [data] copytool_out thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:02,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 22:47:01] 2025-05-27 20:39:06,731 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 22:47:01] 2025-05-27 20:39:07,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145867171648)>', '<ExcThread(monitor, started 140145420384000)>']
[2025-05-27 22:47:01] 2025-05-27 20:39:08,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 22:47:01] 2025-05-27 20:39:08,823 | INFO     | [monitor] control thread has ended
[2025-05-27 22:47:01] 2025-05-27 20:39:12,965 | INFO     | all workflow threads have been joined
[2025-05-27 22:47:01] 2025-05-27 20:39:12,965 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 22:47:01] 2025-05-27 20:39:12,965 | INFO     | traces error code: 0
[2025-05-27 22:47:01] 2025-05-27 20:39:12,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 22:47:01] 2025-05-27 20:39:13,423 [wrapper] ==== pilot stdout END ====
[2025-05-27 22:47:01] 2025-05-27 20:39:13,535 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 22:47:01] 2025-05-27 20:39:13,642 [wrapper] pilotpid: 16084
[2025-05-27 22:47:01] 2025-05-27 20:39:13,752 [wrapper] Pilot exit status: 0
[2025-05-27 22:47:01] 2025-05-27 20:39:14,082 [wrapper] pandaids: 6666242070
[2025-05-27 22:47:01] 2025-05-27 20:39:14,639 [wrapper] cleanup supervisor_pilot 15789 16085
[2025-05-27 22:47:01] 2025-05-27 20:39:14,730 [wrapper] Test setup, not cleaning
[2025-05-27 22:47:01] 2025-05-27 20:39:14,833 [wrapper] apfmon messages muted
[2025-05-27 22:47:01] 2025-05-27 20:39:14,925 [wrapper] ==== wrapper stdout END ====
[2025-05-27 22:47:01] 2025-05-27 20:39:14,999 [wrapper] ==== wrapper stderr END ====
[2025-05-27 22:47:01]  *** Error codes and diagnostics ***
[2025-05-27 22:47:01]     "exeErrorCode": 0,
[2025-05-27 22:47:01]     "exeErrorDiag": "",
[2025-05-27 22:47:01]     "pilotErrorCode": 0,
[2025-05-27 22:47:01]     "pilotErrorDiag": "",
[2025-05-27 22:47:01]  *** Listing of results directory ***
[2025-05-27 22:47:01] total 423872
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc    495897 May 26 23:09 pilot3.tar.gz
[2025-05-27 22:47:01] -rwx------. 1 boinc boinc     37140 May 26 23:19 runpilot2-wrapper.sh
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc      5111 May 26 23:19 queuedata.json
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc       100 May 27 17:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 22:47:01] -rwxr-xr-x. 1 boinc boinc      7986 May 27 17:07 run_atlas
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc       105 May 27 17:07 job.xml
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc      6372 May 27 17:07 init_data.xml
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc 224333274 May 27 17:07 EVNT.44871834._002258.pool.root.1
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc     15093 May 27 17:07 start_atlas.sh
[2025-05-27 22:47:01] drwxrwx--x. 2 boinc boinc        68 May 27 17:07 shared
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc    508876 May 27 17:07 input.tar.gz
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc         0 May 27 17:07 boinc_lockfile
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc      2559 May 27 17:07 pandaJob.out
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc    990964 May 27 17:11 agis_schedconf.cvmfs.json
[2025-05-27 22:47:01] drwx------. 4 boinc boinc      4096 May 27 17:11 pilot3
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc 201683128 May 27 22:36 HITS.44871837._056934.pool.root.1
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc       531 May 27 22:36 boinc_task_state.xml
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc      1019 May 27 22:37 memory_monitor_summary.json
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc   1603667 May 27 22:37 agis_ddmendpoints.agis.ALL.json
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc    436224 May 27 22:37 log.44871837._056934.job.log.tgz.1
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc        95 May 27 22:38 pilot_heartbeat.json
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc      7690 May 27 22:38 heartbeat.json
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc      4416 May 27 22:39 pilotlog.txt
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc   1664712 May 27 22:39 log.44871837._056934.job.log.1
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc       357 May 27 22:39 output.list
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc       620 May 27 22:39 runtime_log
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc   2119680 May 27 22:39 result.tar.gz
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc      8659 May 27 22:39 runtime_log.err
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc       657 May 27 22:39 RouKDmLPud7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtnQKDmXoEIVn.diag
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc      8192 May 27 22:47 boinc_mmap_file
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc        28 May 27 22:47 wrapper_checkpoint.txt
[2025-05-27 22:47:01] -rw-r--r--. 1 boinc boinc     20515 May 27 22:47 stderr.txt
[2025-05-27 22:47:01] HITS file was successfully produced:
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc 201683128 May 27 22:36 shared/HITS.pool.root.1
[2025-05-27 22:47:01]  *** Contents of shared directory: ***
[2025-05-27 22:47:01] total 418624
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc 224333274 May 27 17:07 ATLAS.root_0
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc     15093 May 27 17:07 start_atlas.sh
[2025-05-27 22:47:01] -rw-r--r--. 2 boinc boinc    508876 May 27 17:07 input.tar.gz
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc 201683128 May 27 22:36 HITS.pool.root.1
[2025-05-27 22:47:01] -rw-------. 1 boinc boinc   2119680 May 27 22:39 result.tar.gz
22:47:03 (8787): run_atlas exited; CPU time 71641.375283
22:47:03 (8787): called boinc_finish(0)

</stderr_txt>
]]>

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