Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:30 (20424): wrapper (7.7.26015): starting
14:41:30 (20424): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 14:41:30] Arguments: --nthreads 8
[2025-05-27 14:41:30] Threads: 8
[2025-05-27 14:41:30] Checking for CVMFS
[2025-05-27 14:41:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 14:41:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 14:41:31] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 14:41:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 14:41:32] 2.11.2.0 16148 21708 93256 146480 1 59 23734745 25165825 4170 130560 0 12510996 99.766 14174219 1713 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 14:41:32] CVMFS is ok
[2025-05-27 14:41:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 14:41:32] Checking for apptainer binary...
[2025-05-27 14:41:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 14:41:32] Running /usr/bin/apptainer --version
[2025-05-27 14:41:32] apptainer version 1.3.2-1.el7
[2025-05-27 14:41:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 14:41:39] cg-vwn372.simple-grid.lan
[2025-05-27 14:41:39] apptainer works
[2025-05-27 14:41:39] Set ATHENA_PROC_NUMBER=8
[2025-05-27 14:41:39] Set ATHENA_CORE_NUMBER=8
[2025-05-27 14:41:39] Starting ATLAS job with PandaID=6666240456
[2025-05-27 14:41:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 19:49:13]  *** The last 200 lines of the pilot log: ***
[2025-05-27 19:49:13] 2025-05-27 17:44:36,440 | INFO     | extracted standard info from prmon json
[2025-05-27 19:49:13] 2025-05-27 17:44:36,440 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 19:49:13] 2025-05-27 17:44:36,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 19:49:13] 2025-05-27 17:44:36,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 19:49:13] 2025-05-27 17:44:36,441 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 19:49:13] 2025-05-27 17:44:36,447 | INFO     | fitting pss+swap vs Time
[2025-05-27 19:49:13] 2025-05-27 17:44:36,448 | INFO     | sum of square deviations: 7178069470.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,460 | INFO     | sum of deviations: 116476103825.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,460 | INFO     | mean x: 1748359067.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,460 | INFO     | mean y: 2446722.2280701753
[2025-05-27 19:49:13] 2025-05-27 17:44:36,460 | INFO     | -- intersect: -28367584114.38797
[2025-05-27 19:49:13] 2025-05-27 17:44:36,460 | INFO     | intersect: -28367584114.38797
[2025-05-27 19:49:13] 2025-05-27 17:44:36,461 | INFO     | chi2: 7.017273244957828
[2025-05-27 19:49:13] 2025-05-27 17:44:36,462 | INFO     | sum of square deviations: 6806862510.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,464 | INFO     | sum of deviations: 133261810666.99997
[2025-05-27 19:49:13] 2025-05-27 17:44:36,465 | INFO     | mean x: 1748358914.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,465 | INFO     | mean y: 2453506.557142857
[2025-05-27 19:49:13] 2025-05-27 17:44:36,465 | INFO     | -- intersect: -34226161262.69586
[2025-05-27 19:49:13] 2025-05-27 17:44:36,465 | INFO     | intersect: -34226161262.69586
[2025-05-27 19:49:13] 2025-05-27 17:44:36,466 | INFO     | chi2: 6.2837967046482035
[2025-05-27 19:49:13] 2025-05-27 17:44:36,466 | INFO     | current chi2=6.2837967046482035 (change=10.452443772752535 %)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,466 | INFO     | right removable region: 279
[2025-05-27 19:49:13] 2025-05-27 17:44:36,466 | INFO     | sum of square deviations: 6806862510.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,469 | INFO     | sum of deviations: 16920793019.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,469 | INFO     | mean x: 1748359219.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,470 | INFO     | mean y: 2487594.8321428574
[2025-05-27 19:49:13] 2025-05-27 17:44:36,470 | INFO     | -- intersect: -4343659316.96938
[2025-05-27 19:49:13] 2025-05-27 17:44:36,470 | INFO     | intersect: -4343659316.96938
[2025-05-27 19:49:13] 2025-05-27 17:44:36,470 | INFO     | chi2: 2.2131857636362913
[2025-05-27 19:49:13] 2025-05-27 17:44:36,471 | INFO     | current chi2=2.2131857636362913 (change=68.46088663817463 %)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,471 | INFO     | sum of square deviations: 6448679050.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,474 | INFO     | sum of deviations: -29939637225.00002
[2025-05-27 19:49:13] 2025-05-27 17:44:36,474 | INFO     | mean x: 1748359372.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,474 | INFO     | mean y: 2507439.1963636363
[2025-05-27 19:49:13] 2025-05-27 17:44:36,474 | INFO     | -- intersect: 8119711742.705446
[2025-05-27 19:49:13] 2025-05-27 17:44:36,474 | INFO     | intersect: 8119711742.705446
[2025-05-27 19:49:13] 2025-05-27 17:44:36,475 | INFO     | chi2: 0.9232285899816335
[2025-05-27 19:49:13] 2025-05-27 17:44:36,475 | INFO     | current chi2=0.9232285899816335 (change=58.285083649518974 %)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,476 | INFO     | sum of square deviations: 6103286527.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,478 | INFO     | sum of deviations: -26674996677.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,479 | INFO     | mean x: 1748359524.5
[2025-05-27 19:49:13] 2025-05-27 17:44:36,479 | INFO     | mean y: 2505973.937037037
[2025-05-27 19:49:13] 2025-05-27 17:44:36,479 | INFO     | -- intersect: 7643878257.04635
[2025-05-27 19:49:13] 2025-05-27 17:44:36,479 | INFO     | intersect: 7643878257.04635
[2025-05-27 19:49:13] 2025-05-27 17:44:36,479 | INFO     | chi2: 0.9062740352990749
[2025-05-27 19:49:13] 2025-05-27 17:44:36,480 | INFO     | current chi2=0.9062740352990749 (change=1.836441685898816 %)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,480 | INFO     | left removable region: 30
[2025-05-27 19:49:13] 2025-05-27 17:44:36,480 | INFO     | sum of square deviations: 4787066500.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,482 | INFO     | sum of deviations: 11329792788.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,483 | INFO     | mean x: 1748359799.0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,483 | INFO     | mean y: 2504637.8353413655
[2025-05-27 19:49:13] 2025-05-27 17:44:36,483 | INFO     | -- intersect: -4135427066.5893474
[2025-05-27 19:49:13] 2025-05-27 17:44:36,483 | INFO     | intersect: -4135427066.5893474
[2025-05-27 19:49:13] 2025-05-27 17:44:36,484 | INFO     | chi2: 0.0010603546768464978
[2025-05-27 19:49:13] 2025-05-27 17:44:36,484 | INFO     | -- intersect: -4135427066.5893474
[2025-05-27 19:49:13] 2025-05-27 17:44:36,484 | INFO     | current memory leak: 2.37 B/s (using 249 data points, chi2=0.00)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,485 | INFO     | ..............................
[2025-05-27 19:49:13] 2025-05-27 17:44:36,485 | INFO     | . Timing measurements:
[2025-05-27 19:49:13] 2025-05-27 17:44:36,485 | INFO     | . get job = 0 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,485 | INFO     | . initial setup = 4 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,485 | INFO     | . payload setup = 175 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,486 | INFO     | . stage-in = 0 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,486 | INFO     | . payload execution = 17532 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,486 | INFO     | . stage-out = 3 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,486 | INFO     | . log creation = 1 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,486 | INFO     | ..............................
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | 
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | job summary report
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | --------------------------------------------------
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | PanDA job id: 6666240456
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | task id: 44871837
[2025-05-27 19:49:13] 2025-05-27 17:44:36,624 | INFO     | errors: (none)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | pilot state: finished 
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | transexitcode: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | exeerrorcode: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | exeerrordiag: 
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | exitcode: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | exitmsg: OK
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | cpuconsumptiontime: 66507 s
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | nevents: 400
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | neventsw: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:36,625 | INFO     | pid: 5204
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | pgrp: 5204
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | corecount: 8
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | event service: False
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | sizes: {0: 2404406, 1: 2405092, 2: 2405291, 13: 2405291, 23: 2405347, 34: 2405375, 45: 2405531, 56: 2405559, 66: 2405587, 77: 2405615, 88: 2405671, 96: 2406185, 98
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | --------------------------------------------------
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | 
[2025-05-27 19:49:13] 2025-05-27 17:44:36,626 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-05-27 19:49:13] 2025-05-27 17:44:36,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,833 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 19:49:13] 2025-05-27 17:44:36,835 | INFO     | job 6666240456 has completed (purged errors)
[2025-05-27 19:49:13] 2025-05-27 17:44:36,835 | INFO     | overall cleanup function is called
[2025-05-27 19:49:13] 2025-05-27 17:44:37,843 | INFO     | --- collectZombieJob: --- 10, [5204]
[2025-05-27 19:49:13] 2025-05-27 17:44:37,843 | INFO     | zombie collector waiting for pid 5204
[2025-05-27 19:49:13] 2025-05-27 17:44:37,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 19:49:13] 2025-05-27 17:44:37,843 | INFO     | collected zombie processes
[2025-05-27 19:49:13] 2025-05-27 17:44:37,843 | INFO     | will attempt to kill all subprocesses of pid=5204
[2025-05-27 19:49:13] 2025-05-27 17:44:37,956 | INFO     | process IDs to be killed: [5204] (in reverse order)
[2025-05-27 19:49:13] 2025-05-27 17:44:38,492 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 19:49:13] 2025-05-27 17:44:38,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 19:49:13] 2025-05-27 17:44:38,495 | INFO     | did not find any defunct processes belonging to 5204
[2025-05-27 19:49:13] 2025-05-27 17:44:38,498 | INFO     | did not find any defunct processes belonging to 5204
[2025-05-27 19:49:13] 2025-05-27 17:44:38,499 | INFO     | ready for new job
[2025-05-27 19:49:13] 2025-05-27 17:44:38,499 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 19:49:13] 2025-05-27 17:44:38,505 | INFO     | **************************************
[2025-05-27 19:49:13] 2025-05-27 17:44:38,505 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 19:49:13] 2025-05-27 17:44:38,506 | INFO     | **************************************
[2025-05-27 19:49:13] 2025-05-27 17:44:38,506 | INFO     | 
[2025-05-27 19:49:13] 2025-05-27 17:44:38,506 | INFO     | pilot is running in a VM
[2025-05-27 19:49:13] 2025-05-27 17:44:38,506 | INFO     | architecture information:
[2025-05-27 19:49:13] 2025-05-27 17:44:38,518 | INFO     | executing command: cat /etc/os-release
[2025-05-27 19:49:13] 2025-05-27 17:44:38,828 | INFO     | cat /etc/os-release:
[2025-05-27 19:49:13] NAME="CentOS Linux"
[2025-05-27 19:49:13] VERSION="7 (Core)"
[2025-05-27 19:49:13] ID="centos"
[2025-05-27 19:49:13] ID_LIKE="rhel fedora"
[2025-05-27 19:49:13] VERSION_ID="7"
[2025-05-27 19:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 19:49:13] ANSI_COLOR="0;31"
[2025-05-27 19:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 19:49:13] HOME_URL="https://www.centos.org/"
[2025-05-27 19:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 19:49:13] 
[2025-05-27 19:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 19:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 19:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 19:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 19:49:13] 
[2025-05-27 19:49:13] 2025-05-27 17:44:38,828 | INFO     | **************************************
[2025-05-27 19:49:13] 2025-05-27 17:44:39,332 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-05-27 19:49:13] 2025-05-27 17:44:39,616 | INFO     | sufficient remaining disk space (494772682752 B)
[2025-05-27 19:49:13] 2025-05-27 17:44:39,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 19:49:13] 2025-05-27 17:44:39,617 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 19:49:13] 2025-05-27 17:44:39,617 | INFO     | update_server=False
[2025-05-27 19:49:13] 2025-05-27 17:44:39,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 19:49:13] 2025-05-27 17:44:39,618 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 19:49:13] 2025-05-27 17:44:39,618 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 19:49:13] 2025-05-27 17:44:39,618 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 19:49:13] 2025-05-27 17:44:39,618 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 19:49:13] 2025-05-27 17:44:39,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 19:49:13] 2025-05-27 17:44:39,620 | INFO     | aborting loop
[2025-05-27 19:49:13] 2025-05-27 17:44:39,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 19:49:13] 2025-05-27 17:44:40,035 | INFO     | all data control threads have been joined
[2025-05-27 19:49:13] 2025-05-27 17:44:40,623 | INFO     | [job] retrieve thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:40,626 | INFO     | [job] job monitor thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:40,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 19:49:13] 2025-05-27 17:44:40,675 | INFO     | all job control threads have been joined
[2025-05-27 19:49:13] 2025-05-27 17:44:40,926 | INFO     | [data] copytool_in thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:40,933 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:40,982 | INFO     | all payload control threads have been joined
[2025-05-27 19:49:13] 2025-05-27 17:44:41,041 | INFO     | [data] control thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,379 | INFO     | [job] validate thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,540 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,631 | INFO     | [data] copytool_out thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 19:49:13] 2025-05-27 17:44:41,681 | INFO     | [job] control thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,720 | INFO     | [payload] validate_post thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,734 | INFO     | [payload] failed_post thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,807 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:41,988 | INFO     | [payload] control thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:42,644 | INFO     | [job] queue monitor thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:44,677 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 19:49:13] 2025-05-27 17:44:45,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021846234944)>', '<ExcThread(monitor, started 140021034120960)>']
[2025-05-27 19:49:13] 2025-05-27 17:44:45,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 19:49:13] 2025-05-27 17:44:45,654 | INFO     | [monitor] control thread has ended
[2025-05-27 19:49:13] 2025-05-27 17:44:50,326 | INFO     | all workflow threads have been joined
[2025-05-27 19:49:13] 2025-05-27 17:44:50,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 19:49:13] 2025-05-27 17:44:50,326 | INFO     | traces error code: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:50,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 19:49:13] 2025-05-27 17:44:50,593 [wrapper] ==== pilot stdout END ====
[2025-05-27 19:49:13] 2025-05-27 17:44:50,697 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 19:49:13] 2025-05-27 17:44:50,817 [wrapper] pilotpid: 30992
[2025-05-27 19:49:13] 2025-05-27 17:44:50,890 [wrapper] Pilot exit status: 0
[2025-05-27 19:49:13] 2025-05-27 17:44:51,296 [wrapper] pandaids: 6666240456
[2025-05-27 19:49:13] 2025-05-27 17:44:51,774 [wrapper] cleanup supervisor_pilot 20873 30993
[2025-05-27 19:49:13] 2025-05-27 17:44:51,878 [wrapper] Test setup, not cleaning
[2025-05-27 19:49:13] 2025-05-27 17:44:51,985 [wrapper] apfmon messages muted
[2025-05-27 19:49:13] 2025-05-27 17:44:52,088 [wrapper] ==== wrapper stdout END ====
[2025-05-27 19:49:13] 2025-05-27 17:44:52,176 [wrapper] ==== wrapper stderr END ====
[2025-05-27 19:49:13]  *** Error codes and diagnostics ***
[2025-05-27 19:49:13]     "exeErrorCode": 0,
[2025-05-27 19:49:13]     "exeErrorDiag": "",
[2025-05-27 19:49:13]     "pilotErrorCode": 0,
[2025-05-27 19:49:13]     "pilotErrorDiag": "",
[2025-05-27 19:49:13]  *** Listing of results directory ***
[2025-05-27 19:49:13] total 416012
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc    495897 May 26 22:15 pilot3.tar.gz
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc      5111 May 26 22:22 queuedata.json
[2025-05-27 19:49:13] -rwx------. 1 boinc boinc     37140 May 26 22:22 runpilot2-wrapper.sh
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc       100 May 27 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 19:49:13] -rwxr-xr-x. 1 boinc boinc      7986 May 27 14:41 run_atlas
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc       105 May 27 14:41 job.xml
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc 225406367 May 27 14:41 EVNT.44871834._002239.pool.root.1
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc     15093 May 27 14:41 start_atlas.sh
[2025-05-27 19:49:13] drwxrwx--x. 2 boinc boinc        68 May 27 14:41 shared
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc    508876 May 27 14:41 input.tar.gz
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc      6372 May 27 14:41 init_data.xml
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc         0 May 27 14:41 boinc_lockfile
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc      2559 May 27 14:41 pandaJob.out
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc    990967 May 27 14:44 agis_schedconf.cvmfs.json
[2025-05-27 19:49:13] drwx------. 4 boinc boinc      4096 May 27 14:44 pilot3
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc 192920336 May 27 19:41 HITS.44871837._056447.pool.root.1
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc       531 May 27 19:42 boinc_task_state.xml
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc      1017 May 27 19:43 memory_monitor_summary.json
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc   1603667 May 27 19:43 agis_ddmendpoints.agis.ALL.json
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc    405331 May 27 19:43 log.44871837._056447.job.log.tgz.1
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc        95 May 27 19:44 pilot_heartbeat.json
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc      7691 May 27 19:44 heartbeat.json
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc      4540 May 27 19:44 pilotlog.txt
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc   1518468 May 27 19:44 log.44871837._056447.job.log.1
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc       357 May 27 19:44 output.list
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc       620 May 27 19:44 runtime_log
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc   1945600 May 27 19:44 result.tar.gz
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc       656 May 27 19:44 uhsKDmIWtd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzjQKDmAffFAn.diag
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc      8673 May 27 19:44 runtime_log.err
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc      8192 May 27 19:49 boinc_mmap_file
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc        28 May 27 19:49 wrapper_checkpoint.txt
[2025-05-27 19:49:13] -rw-r--r--. 1 boinc boinc     20501 May 27 19:49 stderr.txt
[2025-05-27 19:49:13] HITS file was successfully produced:
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc 192920336 May 27 19:41 shared/HITS.pool.root.1
[2025-05-27 19:49:13]  *** Contents of shared directory: ***
[2025-05-27 19:49:13] total 410940
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc 225406367 May 27 14:41 ATLAS.root_0
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc     15093 May 27 14:41 start_atlas.sh
[2025-05-27 19:49:13] -rw-r--r--. 2 boinc boinc    508876 May 27 14:41 input.tar.gz
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc 192920336 May 27 19:41 HITS.pool.root.1
[2025-05-27 19:49:13] -rw-------. 1 boinc boinc   1945600 May 27 19:44 result.tar.gz
19:49:15 (20424): run_atlas exited; CPU time 66755.445252
19:49:15 (20424): called boinc_finish(0)

</stderr_txt>
]]>

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