Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:11 (28595): wrapper (7.7.26015): starting
13:57:11 (28595): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 13:57:11] Arguments: --nthreads 8
[2025-05-27 13:57:11] Threads: 8
[2025-05-27 13:57:11] Checking for CVMFS
[2025-05-27 13:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 13:57:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 13:57:13] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 13:57:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 13:57:14] 2.11.2.0 26253 21654 94248 146479 3 60 22957701 25165825 4240 130560 0 12705298 99.770 14069357 1982 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 13:57:14] CVMFS is ok
[2025-05-27 13:57:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 13:57:14] Checking for apptainer binary...
[2025-05-27 13:57:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 13:57:14] Running /usr/bin/apptainer --version
[2025-05-27 13:57:14] apptainer version 1.3.2-1.el7
[2025-05-27 13:57:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 13:57:26] cg-vwn377.simple-grid.lan
[2025-05-27 13:57:26] apptainer works
[2025-05-27 13:57:26] Set ATHENA_PROC_NUMBER=8
[2025-05-27 13:57:26] Set ATHENA_CORE_NUMBER=8
[2025-05-27 13:57:27] Starting ATLAS job with PandaID=6666239605
[2025-05-27 13:57:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 19:18:39]  *** The last 200 lines of the pilot log: ***
[2025-05-27 19:18:39] 2025-05-27 17:14:17,136 | INFO     | extracted standard info from prmon json
[2025-05-27 19:18:39] 2025-05-27 17:14:17,136 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 19:18:39] 2025-05-27 17:14:17,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 19:18:39] 2025-05-27 17:14:17,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 19:18:39] 2025-05-27 17:14:17,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 19:18:39] 2025-05-27 17:14:17,143 | INFO     | fitting pss+swap vs Time
[2025-05-27 19:18:39] 2025-05-27 17:14:17,144 | INFO     | sum of square deviations: 8288713550.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,147 | INFO     | sum of deviations: 121125810220.00006
[2025-05-27 19:18:39] 2025-05-27 17:14:17,147 | INFO     | mean x: 1748356808.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,147 | INFO     | mean y: 2451572.62541806
[2025-05-27 19:18:39] 2025-05-27 17:14:17,147 | INFO     | -- intersect: -25546885323.285656
[2025-05-27 19:18:39] 2025-05-27 17:14:17,147 | INFO     | intersect: -25546885323.285656
[2025-05-27 19:18:39] 2025-05-27 17:14:17,148 | INFO     | chi2: 6.287222854081409
[2025-05-27 19:18:39] 2025-05-27 17:14:17,149 | INFO     | sum of square deviations: 7879803557.5
[2025-05-27 19:18:39] 2025-05-27 17:14:17,152 | INFO     | sum of deviations: 138923829080.99988
[2025-05-27 19:18:39] 2025-05-27 17:14:17,152 | INFO     | mean x: 1748356655.5
[2025-05-27 19:18:39] 2025-05-27 17:14:17,152 | INFO     | mean y: 2458109.646258503
[2025-05-27 19:18:39] 2025-05-27 17:14:17,152 | INFO     | -- intersect: -30821711478.963512
[2025-05-27 19:18:39] 2025-05-27 17:14:17,152 | INFO     | intersect: -30821711478.963512
[2025-05-27 19:18:39] 2025-05-27 17:14:17,153 | INFO     | chi2: 5.547227999823969
[2025-05-27 19:18:39] 2025-05-27 17:14:17,153 | INFO     | current chi2=5.547227999823969 (change=11.769820657415787 %)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,153 | INFO     | right removable region: 293
[2025-05-27 19:18:39] 2025-05-27 17:14:17,154 | INFO     | sum of square deviations: 7879803557.5
[2025-05-27 19:18:39] 2025-05-27 17:14:17,157 | INFO     | sum of deviations: 18207726946.999996
[2025-05-27 19:18:39] 2025-05-27 17:14:17,157 | INFO     | mean x: 1748356960.5
[2025-05-27 19:18:39] 2025-05-27 17:14:17,157 | INFO     | mean y: 2489923.7891156464
[2025-05-27 19:18:39] 2025-05-27 17:14:17,157 | INFO     | -- intersect: -4037408521.6958127
[2025-05-27 19:18:39] 2025-05-27 17:14:17,158 | INFO     | intersect: -4037408521.6958127
[2025-05-27 19:18:39] 2025-05-27 17:14:17,158 | INFO     | chi2: 1.7135862868442637
[2025-05-27 19:18:39] 2025-05-27 17:14:17,158 | INFO     | current chi2=1.7135862868442637 (change=72.74494118286464 %)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,159 | INFO     | sum of square deviations: 7484568240.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,168 | INFO     | sum of deviations: -22329949139.999996
[2025-05-27 19:18:39] 2025-05-27 17:14:17,168 | INFO     | mean x: 1748357113.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,168 | INFO     | mean y: 2505497.0865051905
[2025-05-27 19:18:39] 2025-05-27 17:14:17,169 | INFO     | -- intersect: 5218668161.380314
[2025-05-27 19:18:39] 2025-05-27 17:14:17,169 | INFO     | intersect: 5218668161.380314
[2025-05-27 19:18:39] 2025-05-27 17:14:17,169 | INFO     | chi2: 0.8749382690408242
[2025-05-27 19:18:39] 2025-05-27 17:14:17,169 | INFO     | current chi2=0.8749382690408242 (change=48.9411023093498 %)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,170 | INFO     | sum of square deviations: 7102775035.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,172 | INFO     | sum of deviations: -33628875013.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,173 | INFO     | mean x: 1748357265.5
[2025-05-27 19:18:39] 2025-05-27 17:14:17,173 | INFO     | mean y: 2509996.3732394367
[2025-05-27 19:18:39] 2025-05-27 17:14:17,173 | INFO     | -- intersect: 8280301094.901248
[2025-05-27 19:18:39] 2025-05-27 17:14:17,173 | INFO     | intersect: 8280301094.901248
[2025-05-27 19:18:39] 2025-05-27 17:14:17,173 | INFO     | chi2: 0.8045172262947804
[2025-05-27 19:18:39] 2025-05-27 17:14:17,174 | INFO     | current chi2=0.8045172262947804 (change=8.048687003169357 %)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,174 | INFO     | left removable region: 30
[2025-05-27 19:18:39] 2025-05-27 17:14:17,174 | INFO     | sum of square deviations: 5640782972.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,176 | INFO     | sum of deviations: -12536294159.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | mean x: 1748357540.0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | mean y: 2517212.4068441065
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | -- intersect: 3888134603.7056932
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | intersect: 3888134603.7056932
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | chi2: 0.01199785280912746
[2025-05-27 19:18:39] 2025-05-27 17:14:17,177 | INFO     | -- intersect: 3888134603.7056932
[2025-05-27 19:18:39] 2025-05-27 17:14:17,178 | INFO     | current memory leak: -2.22 B/s (using 263 data points, chi2=0.01)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,178 | INFO     | ..............................
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . Timing measurements:
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . get job = 0 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . initial setup = 11 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . payload setup = 151 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . stage-in = 0 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . payload execution = 18378 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . stage-out = 3 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | . log creation = 1 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,179 | INFO     | ..............................
[2025-05-27 19:18:39] 2025-05-27 17:14:17,344 | INFO     | 
[2025-05-27 19:18:39] 2025-05-27 17:14:17,344 | INFO     | job summary report
[2025-05-27 19:18:39] 2025-05-27 17:14:17,344 | INFO     | --------------------------------------------------
[2025-05-27 19:18:39] 2025-05-27 17:14:17,344 | INFO     | PanDA job id: 6666239605
[2025-05-27 19:18:39] 2025-05-27 17:14:17,344 | INFO     | task id: 44871837
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | errors: (none)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | pilot state: finished 
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | transexitcode: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | exeerrorcode: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | exeerrordiag: 
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | exitcode: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | exitmsg: OK
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | cpuconsumptiontime: 69371 s
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | nevents: 400
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | neventsw: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | pid: 10510
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | pgrp: 10510
[2025-05-27 19:18:39] 2025-05-27 17:14:17,345 | INFO     | corecount: 8
[2025-05-27 19:18:39] 2025-05-27 17:14:17,346 | INFO     | event service: False
[2025-05-27 19:18:39] 2025-05-27 17:14:17,346 | INFO     | sizes: {0: 2405006, 1: 2405261, 12: 2405261, 23: 2405289, 33: 2405317, 44: 2405373, 55: 2405529, 65: 2405557, 76: 2405585, 87: 2405875, 98: 2405875, 18534: 2437830
[2025-05-27 19:18:39] 2025-05-27 17:14:17,346 | INFO     | --------------------------------------------------
[2025-05-27 19:18:39] 2025-05-27 17:14:17,346 | INFO     | 
[2025-05-27 19:18:39] 2025-05-27 17:14:17,346 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-27 19:18:39] 2025-05-27 17:14:17,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,963 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | job 6666239605 has completed (purged errors)
[2025-05-27 19:18:39] 2025-05-27 17:14:17,965 | INFO     | overall cleanup function is called
[2025-05-27 19:18:39] 2025-05-27 17:14:18,975 | INFO     | --- collectZombieJob: --- 10, [10510]
[2025-05-27 19:18:39] 2025-05-27 17:14:18,975 | INFO     | zombie collector waiting for pid 10510
[2025-05-27 19:18:39] 2025-05-27 17:14:18,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 19:18:39] 2025-05-27 17:14:18,976 | INFO     | collected zombie processes
[2025-05-27 19:18:39] 2025-05-27 17:14:18,976 | INFO     | will attempt to kill all subprocesses of pid=10510
[2025-05-27 19:18:39] 2025-05-27 17:14:19,089 | INFO     | process IDs to be killed: [10510] (in reverse order)
[2025-05-27 19:18:39] 2025-05-27 17:14:20,025 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 19:18:39] 2025-05-27 17:14:20,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 19:18:39] 2025-05-27 17:14:20,028 | INFO     | did not find any defunct processes belonging to 10510
[2025-05-27 19:18:39] 2025-05-27 17:14:20,032 | INFO     | did not find any defunct processes belonging to 10510
[2025-05-27 19:18:39] 2025-05-27 17:14:20,032 | INFO     | ready for new job
[2025-05-27 19:18:39] 2025-05-27 17:14:20,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 19:18:39] 2025-05-27 17:14:20,034 | INFO     | **************************************
[2025-05-27 19:18:39] 2025-05-27 17:14:20,034 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 19:18:39] 2025-05-27 17:14:20,034 | INFO     | **************************************
[2025-05-27 19:18:39] 2025-05-27 17:14:20,034 | INFO     | 
[2025-05-27 19:18:39] 2025-05-27 17:14:20,035 | INFO     | pilot is running in a VM
[2025-05-27 19:18:39] 2025-05-27 17:14:20,035 | INFO     | architecture information:
[2025-05-27 19:18:39] 2025-05-27 17:14:20,036 | INFO     | executing command: cat /etc/os-release
[2025-05-27 19:18:39] 2025-05-27 17:14:20,211 | INFO     | cat /etc/os-release:
[2025-05-27 19:18:39] NAME="CentOS Linux"
[2025-05-27 19:18:39] VERSION="7 (Core)"
[2025-05-27 19:18:39] ID="centos"
[2025-05-27 19:18:39] ID_LIKE="rhel fedora"
[2025-05-27 19:18:39] VERSION_ID="7"
[2025-05-27 19:18:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 19:18:39] ANSI_COLOR="0;31"
[2025-05-27 19:18:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 19:18:39] HOME_URL="https://www.centos.org/"
[2025-05-27 19:18:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 19:18:39] 
[2025-05-27 19:18:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 19:18:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 19:18:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 19:18:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 19:18:39] 
[2025-05-27 19:18:39] 2025-05-27 17:14:20,212 | INFO     | **************************************
[2025-05-27 19:18:39] 2025-05-27 17:14:20,715 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-27 19:18:39] 2025-05-27 17:14:20,941 | INFO     | sufficient remaining disk space (496051945472 B)
[2025-05-27 19:18:39] 2025-05-27 17:14:20,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 19:18:39] 2025-05-27 17:14:20,941 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 19:18:39] 2025-05-27 17:14:20,941 | INFO     | update_server=False
[2025-05-27 19:18:39] 2025-05-27 17:14:20,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 19:18:39] 2025-05-27 17:14:20,942 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 19:18:39] 2025-05-27 17:14:20,942 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 19:18:39] 2025-05-27 17:14:20,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 19:18:39] 2025-05-27 17:14:20,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 19:18:39] 2025-05-27 17:14:20,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 19:18:39] 2025-05-27 17:14:21,308 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 19:18:39] 2025-05-27 17:14:21,308 | INFO     | aborting loop
[2025-05-27 19:18:39] 2025-05-27 17:14:21,329 | INFO     | all data control threads have been joined
[2025-05-27 19:18:39] 2025-05-27 17:14:21,586 | INFO     | all job control threads have been joined
[2025-05-27 19:18:39] 2025-05-27 17:14:21,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 19:18:39] 2025-05-27 17:14:21,951 | INFO     | [job] retrieve thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:21,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:21,987 | INFO     | [payload] failed_post thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,080 | INFO     | all payload control threads have been joined
[2025-05-27 19:18:39] 2025-05-27 17:14:22,314 | INFO     | [job] job monitor thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,325 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,335 | INFO     | [data] control thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 19:18:39] 2025-05-27 17:14:22,351 | INFO     | [job] validate thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,592 | INFO     | [job] control thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,642 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,685 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,824 | INFO     | [data] copytool_in thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:22,953 | INFO     | [data] copytool_out thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:23,086 | INFO     | [payload] control thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:23,350 | INFO     | [job] queue monitor thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:23,517 | INFO     | [payload] validate_post thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:25,911 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 19:18:39] 2025-05-27 17:14:26,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393440524096)>', '<ExcThread(monitor, started 140392859158272)>']
[2025-05-27 19:18:39] 2025-05-27 17:14:26,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 19:18:39] 2025-05-27 17:14:26,977 | INFO     | [monitor] control thread has ended
[2025-05-27 19:18:39] 2025-05-27 17:14:31,929 | INFO     | all workflow threads have been joined
[2025-05-27 19:18:39] 2025-05-27 17:14:31,929 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 19:18:39] 2025-05-27 17:14:31,930 | INFO     | traces error code: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:31,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 19:18:39] 2025-05-27 17:14:32,171 [wrapper] ==== pilot stdout END ====
[2025-05-27 19:18:39] 2025-05-27 17:14:32,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 19:18:39] 2025-05-27 17:14:32,194 [wrapper] pilotpid: 1917
[2025-05-27 19:18:39] 2025-05-27 17:14:32,204 [wrapper] Pilot exit status: 0
[2025-05-27 19:18:39] 2025-05-27 17:14:32,241 [wrapper] pandaids: 6666239605
[2025-05-27 19:18:39] 2025-05-27 17:14:32,350 [wrapper] cleanup supervisor_pilot  1921 1918
[2025-05-27 19:18:39] 2025-05-27 17:14:32,431 [wrapper] Test setup, not cleaning
[2025-05-27 19:18:39] 2025-05-27 17:14:32,469 [wrapper] apfmon messages muted
[2025-05-27 19:18:39] 2025-05-27 17:14:32,541 [wrapper] ==== wrapper stdout END ====
[2025-05-27 19:18:39] 2025-05-27 17:14:32,611 [wrapper] ==== wrapper stderr END ====
[2025-05-27 19:18:39]  *** Error codes and diagnostics ***
[2025-05-27 19:18:39]     "exeErrorCode": 0,
[2025-05-27 19:18:39]     "exeErrorDiag": "",
[2025-05-27 19:18:39]     "pilotErrorCode": 0,
[2025-05-27 19:18:39]     "pilotErrorDiag": "",
[2025-05-27 19:18:39]  *** Listing of results directory ***
[2025-05-27 19:18:39] total 419876
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc    495897 May 26 21:12 pilot3.tar.gz
[2025-05-27 19:18:39] -rwx------. 1 boinc boinc     37140 May 26 21:51 runpilot2-wrapper.sh
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc      5111 May 26 21:51 queuedata.json
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc       100 May 27 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 19:18:39] -rwxr-xr-x. 1 boinc boinc      7986 May 27 13:57 run_atlas
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc       105 May 27 13:57 job.xml
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc      6371 May 27 13:57 init_data.xml
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc 225691761 May 27 13:57 EVNT.44871834._002226.pool.root.1
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc     15093 May 27 13:57 start_atlas.sh
[2025-05-27 19:18:39] drwxrwx--x. 2 boinc boinc        68 May 27 13:57 shared
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc    508877 May 27 13:57 input.tar.gz
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc         0 May 27 13:57 boinc_lockfile
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc      2558 May 27 13:57 pandaJob.out
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc    990747 May 27 14:00 agis_schedconf.cvmfs.json
[2025-05-27 19:18:39] drwx------. 4 boinc boinc      4096 May 27 14:00 pilot3
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc 196370553 May 27 19:11 HITS.44871837._056142.pool.root.1
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc       531 May 27 19:11 boinc_task_state.xml
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc      1014 May 27 19:12 memory_monitor_summary.json
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc   1603667 May 27 19:12 agis_ddmendpoints.agis.ALL.json
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc    439283 May 27 19:12 log.44871837._056142.job.log.tgz.1
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc        95 May 27 19:14 pilot_heartbeat.json
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc      7689 May 27 19:14 heartbeat.json
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc      4539 May 27 19:14 pilotlog.txt
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc   1594732 May 27 19:14 log.44871837._056142.job.log.1
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc       357 May 27 19:14 output.list
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc       620 May 27 19:14 runtime_log
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc   2048000 May 27 19:14 result.tar.gz
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc      8659 May 27 19:14 runtime_log.err
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc       657 May 27 19:14 o9GODmG2sd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmygQKDmt1aNQo.diag
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc      8192 May 27 19:18 boinc_mmap_file
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc        28 May 27 19:18 wrapper_checkpoint.txt
[2025-05-27 19:18:39] -rw-r--r--. 1 boinc boinc     20517 May 27 19:18 stderr.txt
[2025-05-27 19:18:39] HITS file was successfully produced:
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc 196370553 May 27 19:11 shared/HITS.pool.root.1
[2025-05-27 19:18:39]  *** Contents of shared directory: ***
[2025-05-27 19:18:39] total 414692
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc 225691761 May 27 13:57 ATLAS.root_0
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc     15093 May 27 13:57 start_atlas.sh
[2025-05-27 19:18:39] -rw-r--r--. 2 boinc boinc    508877 May 27 13:57 input.tar.gz
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc 196370553 May 27 19:11 HITS.pool.root.1
[2025-05-27 19:18:39] -rw-------. 1 boinc boinc   2048000 May 27 19:14 result.tar.gz
19:18:41 (28595): run_atlas exited; CPU time 69628.831032
19:18:41 (28595): called boinc_finish(0)

</stderr_txt>
]]>

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