Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
03:39:15 (1872083): wrapper (7.7.26015): starting
03:39:15 (1872083): wrapper: running run_atlas (--nthreads 12)
[2025-05-28 03:39:15] Arguments: --nthreads 12
[2025-05-28 03:39:15] Threads: 12
[2025-05-28 03:39:15] Checking for CVMFS
[2025-05-28 03:39:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 03:39:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 03:39:15] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 03:39:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 03:39:15] 2.12.7.0 3766483 4943 45792 146500 3 56 3051863 4096000 0 130560 1 3754649 99.991 1112459 316 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-05-28 03:39:15] CVMFS is ok
[2025-05-28 03:39:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 03:39:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-05-28 03:39:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-05-28 03:39:15] Further information can be found at the LHC@home message board.
[2025-05-28 03:39:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 03:39:15] Checking for apptainer binary...
[2025-05-28 03:39:15] apptainer is not installed, using version from CVMFS
[2025-05-28 03:39:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 03:39:16] ws24
[2025-05-28 03:39:16] apptainer works
[2025-05-28 03:39:16] Set ATHENA_PROC_NUMBER=12
[2025-05-28 03:39:16] Set ATHENA_CORE_NUMBER=12
[2025-05-28 03:39:16] Starting ATLAS job with PandaID=6665990579
[2025-05-28 03:39:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 05:12:33]  *** The last 200 lines of the pilot log: ***
[2025-05-28 05:12:33]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/log.44871837._051887.job.log.tgz.1
[2025-05-28 05:12:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/68/log.44871837._051887.job.log.tgz.1
[2025-05-28 05:12:33]  workdir=None
[2025-05-28 05:12:33] ]
[2025-05-28 05:12:33] 2025-05-28 03:12:06,118 | INFO     | transferring file log.44871837._051887.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/log.44871837._051887.job.log.tgz.1 to /var/lib/boinc
[2025-05-28 05:12:33] 2025-05-28 03:12:06,118 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/log.44871837._051887.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.448718
[2025-05-28 05:12:33] 2025-05-28 03:12:06,141 | INFO     | adding to output.list: log.44871837._051887.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/68/log.44871837._051887.job.log.tg
[2025-05-28 05:12:33] 2025-05-28 03:12:06,141 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-28 05:12:33] 2025-05-28 03:12:06,141 | INFO     | summary of transferred files:
[2025-05-28 05:12:33] 2025-05-28 03:12:06,141 | INFO     |  -- lfn=log.44871837._051887.job.log.tgz.1, status_code=0, status=transferred
[2025-05-28 05:12:33] 2025-05-28 03:12:06,141 | INFO     | stage-out finished correctly
[2025-05-28 05:12:33] 2025-05-28 03:12:07,050 | WARNING  | process 1882398 can no longer be monitored (due to stat problems) - aborting
[2025-05-28 05:12:33] 2025-05-28 03:12:07,050 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,050 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,051 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4160737 B
[2025-05-28 05:12:33] 2025-05-28 03:12:07,051 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16044 B
[2025-05-28 05:12:33] 2025-05-28 03:12:07,051 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-05-28 05:12:33] 2025-05-28 03:12:07,069 | INFO     | sufficient remaining disk space (18770558976 B)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,069 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,070 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579: 4464447 B (within 2537553920 B limit)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,070 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/HITS.44871837._051887.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,070 | INFO     | total size of present files: 0 B (workdir size: 4464447 B)
[2025-05-28 05:12:33] 2025-05-28 03:12:07,070 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/HITS.44871837._051887.pool.root.1 since it does not exist
[2025-05-28 05:12:33] 2025-05-28 03:12:07,208 | INFO     | number of running child processes to parent process 1882398: 1
[2025-05-28 05:12:33] 2025-05-28 03:12:07,209 | INFO     | maximum number of monitored processes: 6
[2025-05-28 05:12:33] 2025-05-28 03:12:09,439 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-28 05:12:33] 2025-05-28 03:12:09,532 | INFO     | job 6665990579 has state=finished
[2025-05-28 05:12:33] 2025-05-28 03:12:09,532 | INFO     | preparing for final server update for job 6665990579 in state='finished'
[2025-05-28 05:12:33] 2025-05-28 03:12:09,532 | INFO     | this job has now completed (state=finished)
[2025-05-28 05:12:33] 2025-05-28 03:12:09,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-28 05:12:33] 2025-05-28 03:12:09,533 | INFO     | log transfer has been attempted: DONE
[2025-05-28 05:12:33] 2025-05-28 03:12:09,533 | INFO     | job 6665990579 has finished - writing final server update
[2025-05-28 05:12:33] 2025-05-28 03:12:09,533 | INFO     | total number of processed events: 400 (read)
[2025-05-28 05:12:33] 2025-05-28 03:12:09,536 | INFO     | executing command: lscpu
[2025-05-28 05:12:33] 2025-05-28 03:12:09,562 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-28 05:12:33] 2025-05-28 03:12:09,711 | INFO     | monitor loop #410: job 0:6665990579 is in state 'finished'
[2025-05-28 05:12:33] 2025-05-28 03:12:09,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-28 05:12:33] 2025-05-28 03:12:09,797 | INFO     | PID=1875772 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-28 05:12:33] 2025-05-28 03:12:12,214 | INFO     | monitor loop #411: job 0:6665990579 is in state 'finished'
[2025-05-28 05:12:33] 2025-05-28 03:12:12,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,207 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-28 05:12:33] 2025-05-28 03:12:13,207 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6665990579/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,208 | INFO     | extracted standard info from prmon json
[2025-05-28 05:12:33] 2025-05-28 03:12:13,208 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 05:12:33] 2025-05-28 03:12:13,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 05:12:33] 2025-05-28 03:12:13,209 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 05:12:33] 2025-05-28 03:12:13,209 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 05:12:33] 2025-05-28 03:12:13,212 | INFO     | fitting pss+swap vs Time
[2025-05-28 05:12:33] 2025-05-28 03:12:13,212 | INFO     | sum of square deviations: 183761585.0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,213 | INFO     | sum of deviations: -14041975337.000004
[2025-05-28 05:12:33] 2025-05-28 03:12:13,213 | INFO     | mean x: 1748399230.5
[2025-05-28 05:12:33] 2025-05-28 03:12:13,213 | INFO     | mean y: 2815610.238095238
[2025-05-28 05:12:33] 2025-05-28 03:12:13,213 | INFO     | -- intersect: 133605161682.24648
[2025-05-28 05:12:33] 2025-05-28 03:12:13,214 | INFO     | intersect: 133605161682.24648
[2025-05-28 05:12:33] 2025-05-28 03:12:13,214 | INFO     | chi2: 0.16407735833672835
[2025-05-28 05:12:33] 2025-05-28 03:12:13,214 | INFO     | -- intersect: 133605161682.24648
[2025-05-28 05:12:33] 2025-05-28 03:12:13,214 | INFO     | current memory leak: -76.41 B/s (using 84 data points, chi2=0.16)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | ..............................
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | . Timing measurements:
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | . get job = 0 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | . initial setup = 5 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | . payload setup = 6 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,215 | INFO     | . stage-in = 0 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,216 | INFO     | . payload execution = 5531 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,216 | INFO     | . stage-out = 0 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,216 | INFO     | . log creation = 0 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,216 | INFO     | ..............................
[2025-05-28 05:12:33] 2025-05-28 03:12:13,298 | INFO     | 
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | job summary report
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | --------------------------------------------------
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | PanDA job id: 6665990579
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | task id: 44871837
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | errors: (none)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | pilot state: finished 
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | transexitcode: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | exeerrorcode: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | exeerrordiag: 
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | exitcode: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | exitmsg: OK
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | cpuconsumptiontime: 54121 s
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | nevents: 400
[2025-05-28 05:12:33] 2025-05-28 03:12:13,299 | INFO     | neventsw: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | pid: 1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | pgrp: 1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | corecount: 12
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | event service: False
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | sizes: {0: 2405070, 1: 2405269, 4: 2405475, 11: 2405503, 5542: 2431977, 5543: 2440932, 5546: 2441144, 5550: 2441314}
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | --------------------------------------------------
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | 
[2025-05-28 05:12:33] 2025-05-28 03:12:13,300 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,327 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 05:12:33] 2025-05-28 03:12:13,328 | INFO     | job 6665990579 has completed (purged errors)
[2025-05-28 05:12:33] 2025-05-28 03:12:13,328 | INFO     | overall cleanup function is called
[2025-05-28 05:12:33] 2025-05-28 03:12:14,336 | INFO     | --- collectZombieJob: --- 10, [1882398]
[2025-05-28 05:12:33] 2025-05-28 03:12:14,336 | INFO     | zombie collector waiting for pid 1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:14,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 05:12:33] 2025-05-28 03:12:14,336 | INFO     | collected zombie processes
[2025-05-28 05:12:33] 2025-05-28 03:12:14,336 | INFO     | will attempt to kill all subprocesses of pid=1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:14,485 | INFO     | process IDs to be killed: [1882398] (in reverse order)
[2025-05-28 05:12:33] 2025-05-28 03:12:14,563 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 05:12:33] 2025-05-28 03:12:14,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 05:12:33] 2025-05-28 03:12:14,569 | INFO     | did not find any defunct processes belonging to 1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:14,575 | INFO     | did not find any defunct processes belonging to 1882398
[2025-05-28 05:12:33] 2025-05-28 03:12:14,575 | INFO     | ready for new job
[2025-05-28 05:12:33] 2025-05-28 03:12:14,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 05:12:33] 2025-05-28 03:12:14,576 | INFO     | **************************************
[2025-05-28 05:12:33] 2025-05-28 03:12:14,576 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 05:12:33] 2025-05-28 03:12:14,577 | INFO     | **************************************
[2025-05-28 05:12:33] 2025-05-28 03:12:14,577 | INFO     | 
[2025-05-28 05:12:33] 2025-05-28 03:12:14,577 | INFO     | architecture information:
[2025-05-28 05:12:33] 2025-05-28 03:12:14,578 | INFO     | executing command: cat /etc/os-release
[2025-05-28 05:12:33] 2025-05-28 03:12:14,594 | INFO     | cat /etc/os-release:
[2025-05-28 05:12:33] NAME="CentOS Linux"
[2025-05-28 05:12:33] VERSION="7 (Core)"
[2025-05-28 05:12:33] ID="centos"
[2025-05-28 05:12:33] ID_LIKE="rhel fedora"
[2025-05-28 05:12:33] VERSION_ID="7"
[2025-05-28 05:12:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 05:12:33] ANSI_COLOR="0;31"
[2025-05-28 05:12:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 05:12:33] HOME_URL="https://www.centos.org/"
[2025-05-28 05:12:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 05:12:33] 
[2025-05-28 05:12:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 05:12:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 05:12:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 05:12:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 05:12:33] 
[2025-05-28 05:12:33] 2025-05-28 03:12:14,595 | INFO     | **************************************
[2025-05-28 05:12:33] 2025-05-28 03:12:15,097 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-05-28 05:12:33] 2025-05-28 03:12:15,120 | INFO     | sufficient remaining disk space (18775801856 B)
[2025-05-28 05:12:33] 2025-05-28 03:12:15,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 05:12:33] 2025-05-28 03:12:15,120 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 05:12:33] 2025-05-28 03:12:15,120 | INFO     | update_server=False
[2025-05-28 05:12:33] 2025-05-28 03:12:15,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 05:12:33] 2025-05-28 03:12:15,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 05:12:33] 2025-05-28 03:12:15,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 05:12:33] 2025-05-28 03:12:15,288 | INFO     | all payload control threads have been joined
[2025-05-28 05:12:33] 2025-05-28 03:12:15,445 | INFO     | all job control threads have been joined
[2025-05-28 05:12:33] 2025-05-28 03:12:15,535 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 05:12:33] 2025-05-28 03:12:15,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 05:12:33] 2025-05-28 03:12:15,724 | INFO     | aborting loop
[2025-05-28 05:12:33] 2025-05-28 03:12:15,800 | INFO     | all data control threads have been joined
[2025-05-28 05:12:33] 2025-05-28 03:12:15,814 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 05:12:33] 2025-05-28 03:12:15,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 05:12:33] 2025-05-28 03:12:15,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 05:12:33] 2025-05-28 03:12:16,125 | INFO     | [job] retrieve thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,127 | INFO     | [job] queue monitor thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,138 | INFO     | [payload] validate_post thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,294 | INFO     | [payload] control thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,393 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,450 | INFO     | [job] control thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,558 | INFO     | [payload] failed_post thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,729 | INFO     | [job] job monitor thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,765 | INFO     | [data] copytool_in thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,796 | INFO     | [job] validate thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:16,805 | INFO     | [data] control thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:17,079 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:17,127 | INFO     | [data] copytool_out thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:17,183 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:19,542 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:25,710 | INFO     | job.realtimelogging is not enabled
[2025-05-28 05:12:33] 2025-05-28 03:12:26,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 05:12:33] 2025-05-28 03:12:28,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139283259729728)>', '<ExcThread(monitor, started 139282853369600)>']
[2025-05-28 05:12:33] 2025-05-28 03:12:28,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 05:12:33] 2025-05-28 03:12:28,875 | INFO     | [monitor] control thread has ended
[2025-05-28 05:12:33] 2025-05-28 03:12:33,307 | INFO     | all workflow threads have been joined
[2025-05-28 05:12:33] 2025-05-28 03:12:33,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 05:12:33] 2025-05-28 03:12:33,308 | INFO     | traces error code: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:33,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 05:12:33] 2025-05-28 03:12:33,418 [wrapper] ==== pilot stdout END ====
[2025-05-28 05:12:33] 2025-05-28 03:12:33,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 05:12:33] 2025-05-28 03:12:33,426 [wrapper] pilotpid: 1875772
[2025-05-28 05:12:33] 2025-05-28 03:12:33,430 [wrapper] Pilot exit status: 0
[2025-05-28 05:12:33] 2025-05-28 03:12:33,442 [wrapper] pandaids: 6665990579
[2025-05-28 05:12:33] 2025-05-28 03:12:33,486 [wrapper] cleanup supervisor_pilot 1897856 1875773
[2025-05-28 05:12:33] 2025-05-28 03:12:33,490 [wrapper] Test setup, not cleaning
[2025-05-28 05:12:33] 2025-05-28 03:12:33,493 [wrapper] apfmon messages muted
[2025-05-28 05:12:33] 2025-05-28 03:12:33,497 [wrapper] ==== wrapper stdout END ====
[2025-05-28 05:12:33] 2025-05-28 03:12:33,499 [wrapper] ==== wrapper stderr END ====
[2025-05-28 05:12:33]  *** Error codes and diagnostics ***
[2025-05-28 05:12:33]     "exeErrorCode": 0,
[2025-05-28 05:12:33]     "exeErrorDiag": "",
[2025-05-28 05:12:33]     "pilotErrorCode": 0,
[2025-05-28 05:12:33]     "pilotErrorDiag": "",
[2025-05-28 05:12:33]  *** Listing of results directory ***
[2025-05-28 05:12:33] total 418308
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc    495897 May 26 15:12 pilot3.tar.gz
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc      5111 May 26 15:49 queuedata.json
[2025-05-28 05:12:33] -rwx------ 1 boinc boinc     37140 May 26 15:50 runpilot2-wrapper.sh
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc       100 May 28 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 05:12:33] -rwxr-xr-x 1 boinc boinc      7986 May 28 03:39 run_atlas
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc       105 May 28 03:39 job.xml
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc      9498 May 28 03:39 init_data.xml
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc 225884606 May 28 03:39 EVNT.44871834._002065.pool.root.1
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc     15093 May 28 03:39 start_atlas.sh
[2025-05-28 05:12:33] drwxrwx--x 2 boinc boinc      4096 May 28 03:39 shared
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc    508877 May 28 03:39 input.tar.gz
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc         0 May 28 03:39 boinc_lockfile
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc      2559 May 28 03:39 pandaJob.out
[2025-05-28 05:12:33] -rw------- 1 boinc boinc    991169 May 28 03:39 agis_schedconf.cvmfs.json
[2025-05-28 05:12:33] -rw------- 1 boinc boinc   1603667 May 28 03:39 agis_ddmendpoints.agis.ALL.json
[2025-05-28 05:12:33] drwx------ 4 boinc boinc      4096 May 28 03:39 pilot3
[2025-05-28 05:12:33] -rw------- 1 boinc boinc 196815329 May 28 05:11 HITS.44871837._051887.pool.root.1
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc       529 May 28 05:11 boinc_task_state.xml
[2025-05-28 05:12:33] -rw------- 1 boinc boinc      1040 May 28 05:12 memory_monitor_summary.json
[2025-05-28 05:12:33] -rw------- 1 boinc boinc        95 May 28 05:12 pilot_heartbeat.json
[2025-05-28 05:12:33] -rw------- 1 boinc boinc    373471 May 28 05:12 log.44871837._051887.job.log.tgz.1
[2025-05-28 05:12:33] -rw------- 1 boinc boinc      7659 May 28 05:12 heartbeat.json
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc        27 May 28 05:12 wrapper_checkpoint.txt
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc      8192 May 28 05:12 boinc_mmap_file
[2025-05-28 05:12:33] -rw------- 1 boinc boinc      4432 May 28 05:12 pilotlog.txt
[2025-05-28 05:12:33] -rw------- 1 boinc boinc    525955 May 28 05:12 log.44871837._051887.job.log.1
[2025-05-28 05:12:33] -rw------- 1 boinc boinc       357 May 28 05:12 output.list
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc       620 May 28 05:12 runtime_log
[2025-05-28 05:12:33] -rw------- 1 boinc boinc    921600 May 28 05:12 result.tar.gz
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc      8686 May 28 05:12 runtime_log.err
[2025-05-28 05:12:33] -rw------- 1 boinc boinc       637 May 28 05:12 QLyKDm9Ond7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbwWKDmqYSovm.diag
[2025-05-28 05:12:33] -rw-r--r-- 1 boinc boinc     22736 May 28 05:12 stderr.txt
[2025-05-28 05:12:33] HITS file was successfully produced:
[2025-05-28 05:12:33] -rw------- 1 boinc boinc 196815329 May 28 05:11 shared/HITS.pool.root.1
[2025-05-28 05:12:33]  *** Contents of shared directory: ***
[2025-05-28 05:12:33] total 414220
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc 225884606 May 28 03:39 ATLAS.root_0
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc     15093 May 28 03:39 start_atlas.sh
[2025-05-28 05:12:33] -rw-r--r-- 2 boinc boinc    508877 May 28 03:39 input.tar.gz
[2025-05-28 05:12:33] -rw------- 1 boinc boinc 196815329 May 28 05:11 HITS.pool.root.1
[2025-05-28 05:12:33] -rw------- 1 boinc boinc    921600 May 28 05:12 result.tar.gz
05:12:34 (1872083): run_atlas exited; CPU time 53996.208356
05:12:34 (1872083): called boinc_finish(0)

</stderr_txt>
]]>

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