Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-27 16:01:21 (8708): Detected: vboxwrapper 26206
2025-05-27 16:01:21 (8708): Detected: BOINC client v7.16.20
2025-05-27 16:01:22 (8708): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-05-27 16:01:22 (8708): Successfully copied 'init_data.xml' to the shared directory.
2025-05-27 16:01:23 (8708): Create VM. (boinc_f1abb6462b21cd8f, slot#2)
2025-05-27 16:01:23 (8708): Setting Memory Size for VM. (4800MB)
2025-05-27 16:01:24 (8708): Setting CPU Count for VM. (8)
2025-05-27 16:01:24 (8708): Setting Chipset Options for VM.
2025-05-27 16:01:24 (8708): Setting Graphics Controller Options for VM.
2025-05-27 16:01:24 (8708): Setting Boot Options for VM.
2025-05-27 16:01:25 (8708): Setting Network Configuration for NAT.
2025-05-27 16:01:25 (8708): Enabling VM Network Access.
2025-05-27 16:01:25 (8708): Disabling USB Support for VM.
2025-05-27 16:01:25 (8708): Disabling COM Port Support for VM.
2025-05-27 16:01:26 (8708): Disabling LPT Port Support for VM.
2025-05-27 16:01:26 (8708): Disabling Audio Support for VM.
2025-05-27 16:01:26 (8708): Disabling Clipboard Support for VM.
2025-05-27 16:01:27 (8708): Disabling Drag and Drop Support for VM.
2025-05-27 16:01:27 (8708): Adding storage controller(s) to VM.
2025-05-27 16:01:27 (8708): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-27 16:01:28 (8708): Adding VirtualBox Guest Additions to VM.
2025-05-27 16:01:28 (8708): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-27 16:01:29 (8708): forwarding host port 58845 to guest port 80
2025-05-27 16:01:29 (8708): Enabling remote desktop for VM.
2025-05-27 16:01:29 (8708): Required extension pack not installed, remote desktop not enabled.
2025-05-27 16:01:29 (8708): Enabling shared directory for VM.
2025-05-27 16:01:30 (8708): Starting VM using VBoxManage interface. (boinc_f1abb6462b21cd8f, slot#2)
2025-05-27 16:01:33 (8708): Successfully started VM. (PID = '12976')
2025-05-27 16:01:33 (8708): Reporting VM Process ID to BOINC.
2025-05-27 16:01:33 (8708): Guest Log: BIOS: VirtualBox 6.0.14
2025-05-27 16:01:33 (8708): Guest Log: CPUID EDX: 0x178bfbff
2025-05-27 16:01:33 (8708): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-27 16:01:33 (8708): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-27 16:01:33 (8708): Detected: Web Application Enabled (http://localhost:58845)
2025-05-27 16:01:33 (8708): Preference change detected
2025-05-27 16:01:33 (8708): Setting CPU throttle for VM. (80%)
2025-05-27 16:01:33 (8708): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-27 16:01:35 (8708): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-27 16:01:35 (8708): Guest Log: BIOS: Booting from Hard Disk...
2025-05-27 16:01:38 (8708): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-27 16:01:38 (8708): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-27 16:01:38 (8708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-27 16:01:42 (8708): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-27 16:01:42 (8708): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-27 16:01:48 (8708): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000156 main     Log opened 2025-05-27T16:01:47.086585000Z
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000229 main     OS Product: Linux
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000256 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000278 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000299 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000300 main     Process ID: 1367
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000300 main     Package type: LINUX_64BITS_GENERIC
2025-05-27 16:01:48 (8708): Guest Log: 00:00:00.000926 main     5.2.32 r132073 started. Verbose level = 0
2025-05-27 16:01:48 (8708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-27 16:01:48 (8708): Guest Log: [INFO] Mounting shared directory
2025-05-27 16:01:48 (8708): Guest Log: [INFO] Checking for init_data.xml
2025-05-27 16:01:58 (8708): Guest Log: 00:00:10.006109 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 869 030 000ns (GuestNow=1 748 354 518 219 735 000 ns GuestLast=1 748 361 707 088 765 000 ns fSetTimeLastLoop=true )
2025-05-27 16:02:19 (8708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-27 16:02:19 (8708): Guest Log: [INFO] Detected branch: prod
2025-05-27 16:02:19 (8708): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-27 16:02:19 (8708): Guest Log: Copying input files
2025-05-27 16:02:20 (8708): Guest Log: Copied input files into RunAtlas.
2025-05-27 16:02:20 (8708): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-27 16:02:20 (8708): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-27 16:02:20 (8708): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-27 16:02:20 (8708): Guest Log: Further information can be found at the LHC@home message board.
2025-05-27 16:02:27 (8708): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-27 16:02:28 (8708): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-27 16:02:28 (8708): Guest Log: 2.6.3.0 1666 0 32236 146481 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-27 16:02:28 (8708): Guest Log: copied the webapp to /var/www
2025-05-27 16:02:28 (8708): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-27 16:02:28 (8708): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-27 16:02:28 (8708): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-27 16:02:28 (8708): Guest Log:  *** Starting ATLAS job. (PandaID=6665936247 taskID=44871837) ***
2025-05-27 17:41:37 (8708): Status Report: Elapsed Time: '6000.000000'
2025-05-27 17:41:37 (8708): Status Report: CPU Time: '35169.421875'
2025-05-27 18:23:43 (8708): Guest Log:  *** Job finished ***
2025-05-27 18:23:43 (8708): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:32,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:32,631 | INFO     | [data] copytool_out thread has finished
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:36,409 | INFO     | [data] queue_monitor thread has finished
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:36,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230045243200)>', '<ExcThread(monitor, started 140229314856704)>']
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:37,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:37,585 | INFO     | [monitor] control thread has ended
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,804 | INFO     | all workflow threads have been joined
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,804 | INFO     | end of generic workflow (traces error code: 0)
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,805 | INFO     | traces error code: 0
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,885 [wrapper] ==== pilot stdout END ====
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,889 [wrapper] ==== wrapper stdout RESUME ====
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,893 [wrapper] pilotpid: 6012
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,897 [wrapper] Pilot exit status: 0
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,960 [wrapper] pandaids: 6665936247
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,988 [wrapper] cleanup supervisor_pilot  4084 6013
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,992 [wrapper] Test setup, not cleaning
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:41,996 [wrapper] apfmon messages muted
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:42,000 [wrapper] ==== wrapper stdout END ====
2025-05-27 18:23:43 (8708): Guest Log: 2025-05-27 16:23:42,003 [wrapper] ==== wrapper stderr END ====
2025-05-27 18:23:43 (8708): Guest Log:  *** Error codes and diagnostics ***
2025-05-27 18:23:43 (8708): Guest Log:     "exeErrorCode": 0,
2025-05-27 18:23:43 (8708): Guest Log:     "exeErrorDiag": "",
2025-05-27 18:23:43 (8708): Guest Log:     "pilotErrorCode": 0,
2025-05-27 18:23:43 (8708): Guest Log:     "pilotErrorDiag": "",
2025-05-27 18:23:43 (8708): Guest Log:  *** Listing of results directory ***
2025-05-27 18:23:43 (8708): Guest Log: total 205448
2025-05-27 18:23:43 (8708): Guest Log: -rw-r--r--. 1 atlas atlas    503527 Apr  3 07:42 pilot3.tar.gz
2025-05-27 18:23:43 (8708): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 12:39 runpilot2-wrapper.sh
2025-05-27 18:23:43 (8708): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 12:39 queuedata.json
2025-05-27 18:23:43 (8708): Guest Log: -rwxr-xr-x. 1 atlas atlas    517093 May 27 14:02 input.tar.gz
2025-05-27 18:23:43 (8708): Guest Log: -rwxr-xr-x. 1 atlas atlas      9079 May 27 14:02 init_data.xml
2025-05-27 18:23:43 (8708): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 27 14:02 start_atlas.sh
2025-05-27 18:23:43 (8708): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 27 14:02 EVNT.44871834._002031.pool.root.1 -> /data/./ATLAS.root_0
2025-05-27 18:23:43 (8708): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 27 14:02 pandaJob.out
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas    990967 May 27 14:03 agis_schedconf.cvmfs.json
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas   1603667 May 27 14:03 agis_ddmendpoints.agis.ALL.json
2025-05-27 18:23:43 (8708): Guest Log: drwx------. 4 atlas atlas      4096 May 27 14:03 pilot3
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas 204601551 May 27 16:22 HITS.44871837._050989.pool.root.1
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas      1028 May 27 16:23 memory_monitor_summary.json
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas    324902 May 27 16:23 log.44871837._050989.job.log.tgz.1
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas        95 May 27 16:23 pilot_heartbeat.json
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas      7715 May 27 16:23 heartbeat.json
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas      4413 May 27 16:23 pilotlog.txt
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas    674279 May 27 16:23 log.44871837._050989.job.log.1
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas       357 May 27 16:23 output.list
2025-05-27 18:23:43 (8708): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 27 16:23 runtime_log
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas   1013760 May 27 16:23 result.tar.gz
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas       665 May 27 16:23 u1ILDmkHmd7n9Rq4apOajLDm4fhM0noT9bVof3QYDm59PKDms4ipDo.diag
2025-05-27 18:23:43 (8708): Guest Log: -rw-r--r--. 1 atlas atlas      8631 May 27 16:23 runtime_log.err
2025-05-27 18:23:43 (8708): Guest Log: Looking for outputfile HITS.44871837._050989.pool.root.1
2025-05-27 18:23:43 (8708): Guest Log: HITS file was successfully produced
2025-05-27 18:23:43 (8708): Guest Log: -rw-------. 1 atlas atlas 204601551 May 27 16:22 /home/atlas/RunAtlas/HITS.44871837._050989.pool.root.1
2025-05-27 18:23:44 (8708): Guest Log: Successfully finished the ATLAS job!
2025-05-27 18:23:44 (8708): Guest Log: Copying the results back to the shared directory!
2025-05-27 18:23:44 (8708): Guest Log:  *** Contents of shared directory: ***
2025-05-27 18:23:44 (8708): Guest Log: total 419972
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root 223882489 May 27 14:01 ATLAS.root_0
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root 204601551 May 27  2025 HITS.pool.root.1
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root      9079 May 27 14:01 init_data.xml
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root    517093 May 26 22:41 input.tar.gz
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root   1013760 May 27  2025 result.tar.gz
2025-05-27 18:23:44 (8708): Guest Log: -rwxrwxrwx. 1 root root     15093 May 26 22:41 start_atlas.sh
2025-05-27 18:23:44 (8708): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-27 18:23:44 (8708): VM Completion File Detected.
2025-05-27 18:23:44 (8708): Powering off VM.
2025-05-27 18:23:44 (8708): Successfully stopped VM.
2025-05-27 18:23:44 (8708): Deregistering VM. (boinc_f1abb6462b21cd8f, slot#2)
2025-05-27 18:23:44 (8708): Removing network bandwidth throttle group from VM.
2025-05-27 18:23:44 (8708): Removing VM from VirtualBox.
18:23:50 (8708): called boinc_finish(0)

</stderr_txt>
]]>

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