Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:11:21 (17920): wrapper (7.7.26015): starting
11:11:21 (17920): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 11:11:21] Arguments: --nthreads 8
[2025-05-27 11:11:21] Threads: 8
[2025-05-27 11:11:21] Checking for CVMFS
[2025-05-27 11:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 11:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 11:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 11:11:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 11:11:22] 2.11.2.0 1304 21487 90436 146473 0 60 23723497 25165825 3898 130560 0 12649103 99.794 14070240 1781 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 11:11:22] CVMFS is ok
[2025-05-27 11:11:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 11:11:22] Checking for apptainer binary...
[2025-05-27 11:11:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 11:11:22] Running /usr/bin/apptainer --version
[2025-05-27 11:11:22] apptainer version 1.3.2-1.el7
[2025-05-27 11:11:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 11:11:35] cg-vwn245.simple-grid.lan
[2025-05-27 11:11:35] apptainer works
[2025-05-27 11:11:35] Set ATHENA_PROC_NUMBER=8
[2025-05-27 11:11:35] Set ATHENA_CORE_NUMBER=8
[2025-05-27 11:11:35] Starting ATLAS job with PandaID=6666022681
[2025-05-27 11:11:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 17:50:11]  *** The last 200 lines of the pilot log: ***
[2025-05-27 17:50:11] 2025-05-27 14:41:17,202 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 17:50:11] 2025-05-27 14:41:17,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 17:50:11] 2025-05-27 14:41:17,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 17:50:11] 2025-05-27 14:41:17,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 17:50:11] 2025-05-27 14:41:17,209 | INFO     | fitting pss+swap vs Time
[2025-05-27 17:50:11] 2025-05-27 14:41:17,210 | INFO     | sum of square deviations: 9691828230.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,218 | INFO     | sum of deviations: -64722592039.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,219 | INFO     | mean x: 1748347195.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,219 | INFO     | mean y: 2506283.634920635
[2025-05-27 17:50:11] 2025-05-27 14:41:17,219 | INFO     | -- intersect: 11678070435.117512
[2025-05-27 17:50:11] 2025-05-27 14:41:17,219 | INFO     | intersect: 11678070435.117512
[2025-05-27 17:50:11] 2025-05-27 14:41:17,220 | INFO     | chi2: 3.440197354943381
[2025-05-27 17:50:11] 2025-05-27 14:41:17,220 | INFO     | sum of square deviations: 9237596457.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,224 | INFO     | sum of deviations: -21118198627.500008
[2025-05-27 17:50:11] 2025-05-27 14:41:17,224 | INFO     | mean x: 1748347042.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,224 | INFO     | mean y: 2520786.3322580643
[2025-05-27 17:50:11] 2025-05-27 14:41:17,224 | INFO     | -- intersect: 3999441444.5561075
[2025-05-27 17:50:11] 2025-05-27 14:41:17,224 | INFO     | intersect: 3999441444.5561075
[2025-05-27 17:50:11] 2025-05-27 14:41:17,225 | INFO     | chi2: 1.827719139446933
[2025-05-27 17:50:11] 2025-05-27 14:41:17,225 | INFO     | current chi2=1.827719139446933 (change=46.87167767219524 %)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,226 | INFO     | sum of square deviations: 8797783560.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,234 | INFO     | sum of deviations: -20629321478.000015
[2025-05-27 17:50:11] 2025-05-27 14:41:17,234 | INFO     | mean x: 1748346890.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,234 | INFO     | mean y: 2520955.8590163933
[2025-05-27 17:50:11] 2025-05-27 14:41:17,234 | INFO     | -- intersect: 4102100105.8684225
[2025-05-27 17:50:11] 2025-05-27 14:41:17,235 | INFO     | intersect: 4102100105.8684225
[2025-05-27 17:50:11] 2025-05-27 14:41:17,235 | INFO     | chi2: 1.8271249715935105
[2025-05-27 17:50:11] 2025-05-27 14:41:17,235 | INFO     | current chi2=1.8271249715935105 (change=0.03250870664965915 %)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,235 | INFO     | right removable region: 304
[2025-05-27 17:50:11] 2025-05-27 14:41:17,236 | INFO     | sum of square deviations: 9237596457.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,239 | INFO     | sum of deviations: -114886734276.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,239 | INFO     | mean x: 1748347347.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,240 | INFO     | mean y: 2523007.764516129
[2025-05-27 17:50:11] 2025-05-27 14:41:17,240 | INFO     | -- intersect: 21746481845.90757
[2025-05-27 17:50:11] 2025-05-27 14:41:17,240 | INFO     | intersect: 21746481845.90757
[2025-05-27 17:50:11] 2025-05-27 14:41:17,240 | INFO     | chi2: 1.9196728112755028
[2025-05-27 17:50:11] 2025-05-27 14:41:17,241 | INFO     | current chi2=1.9196728112755028 (change=44.19875916371382 %)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,241 | INFO     | sum of square deviations: 8797783560.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,244 | INFO     | sum of deviations: -117372063651.00003
[2025-05-27 17:50:11] 2025-05-27 14:41:17,249 | INFO     | mean x: 1748347500.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,249 | INFO     | mean y: 2523857.881967213
[2025-05-27 17:50:11] 2025-05-27 14:41:17,249 | INFO     | -- intersect: 23327393429.243275
[2025-05-27 17:50:11] 2025-05-27 14:41:17,249 | INFO     | intersect: 23327393429.243275
[2025-05-27 17:50:11] 2025-05-27 14:41:17,250 | INFO     | chi2: 1.8960787353064075
[2025-05-27 17:50:11] 2025-05-27 14:41:17,250 | INFO     | current chi2=1.8960787353064075 (change=1.2290675697708382 %)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,250 | INFO     | left removable region: 20
[2025-05-27 17:50:11] 2025-05-27 14:41:17,250 | INFO     | sum of square deviations: 7102775035.0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,253 | INFO     | sum of deviations: -55714926602.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,253 | INFO     | mean x: 1748347469.5
[2025-05-27 17:50:11] 2025-05-27 14:41:17,254 | INFO     | mean y: 2533024.813380282
[2025-05-27 17:50:11] 2025-05-27 14:41:17,254 | INFO     | -- intersect: 13716757459.469027
[2025-05-27 17:50:11] 2025-05-27 14:41:17,254 | INFO     | intersect: 13716757459.469027
[2025-05-27 17:50:11] 2025-05-27 14:41:17,254 | INFO     | chi2: 0.225939696335795
[2025-05-27 17:50:11] 2025-05-27 14:41:17,254 | INFO     | -- intersect: 13716757459.469027
[2025-05-27 17:50:11] 2025-05-27 14:41:17,255 | INFO     | current memory leak: -7.84 B/s (using 284 data points, chi2=0.23)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,255 | INFO     | ..............................
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . Timing measurements:
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . get job = 0 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . initial setup = 8 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . payload setup = 124 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . stage-in = 0 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . payload execution = 19186 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . stage-out = 3 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | . log creation = 1 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,256 | INFO     | ..............................
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | 
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | job summary report
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | --------------------------------------------------
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | PanDA job id: 6666022681
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | task id: 44871837
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | errors: (none)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,412 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | pilot state: finished 
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | transexitcode: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | exeerrorcode: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | exeerrordiag: 
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | exitcode: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | exitmsg: OK
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | cpuconsumptiontime: 73772 s
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | nevents: 400
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | neventsw: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | pid: 1490
[2025-05-27 17:50:11] 2025-05-27 14:41:17,413 | INFO     | pgrp: 1490
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | corecount: 8
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | event service: False
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | sizes: {0: 2405064, 1: 2405263, 12: 2405263, 23: 2405291, 33: 2405319, 44: 2405375, 55: 2405531, 66: 2405559, 69: 2405793, 76: 2405821, 19315: 2437976, 19319: 2446
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | --------------------------------------------------
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | 
[2025-05-27 17:50:11] 2025-05-27 14:41:17,414 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-05-27 17:50:11] 2025-05-27 14:41:17,959 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 17:50:11] 2025-05-27 14:41:17,961 | INFO     | job 6666022681 has completed (purged errors)
[2025-05-27 17:50:11] 2025-05-27 14:41:17,962 | INFO     | overall cleanup function is called
[2025-05-27 17:50:11] 2025-05-27 14:41:18,970 | INFO     | --- collectZombieJob: --- 10, [1490]
[2025-05-27 17:50:11] 2025-05-27 14:41:18,970 | INFO     | zombie collector waiting for pid 1490
[2025-05-27 17:50:11] 2025-05-27 14:41:18,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 17:50:11] 2025-05-27 14:41:18,970 | INFO     | collected zombie processes
[2025-05-27 17:50:11] 2025-05-27 14:41:18,970 | INFO     | will attempt to kill all subprocesses of pid=1490
[2025-05-27 17:50:11] 2025-05-27 14:41:19,082 | INFO     | process IDs to be killed: [1490] (in reverse order)
[2025-05-27 17:50:11] 2025-05-27 14:41:19,808 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 17:50:11] 2025-05-27 14:41:19,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 17:50:11] 2025-05-27 14:41:19,812 | INFO     | did not find any defunct processes belonging to 1490
[2025-05-27 17:50:11] 2025-05-27 14:41:19,815 | INFO     | did not find any defunct processes belonging to 1490
[2025-05-27 17:50:11] 2025-05-27 14:41:19,816 | INFO     | ready for new job
[2025-05-27 17:50:11] 2025-05-27 14:41:19,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 17:50:11] 2025-05-27 14:41:19,818 | INFO     | **************************************
[2025-05-27 17:50:11] 2025-05-27 14:41:19,818 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 17:50:11] 2025-05-27 14:41:19,818 | INFO     | **************************************
[2025-05-27 17:50:11] 2025-05-27 14:41:19,818 | INFO     | 
[2025-05-27 17:50:11] 2025-05-27 14:41:19,819 | INFO     | pilot is running in a VM
[2025-05-27 17:50:11] 2025-05-27 14:41:19,819 | INFO     | architecture information:
[2025-05-27 17:50:11] 2025-05-27 14:41:19,831 | INFO     | executing command: cat /etc/os-release
[2025-05-27 17:50:11] 2025-05-27 14:41:20,108 | INFO     | cat /etc/os-release:
[2025-05-27 17:50:11] NAME="CentOS Linux"
[2025-05-27 17:50:11] VERSION="7 (Core)"
[2025-05-27 17:50:11] ID="centos"
[2025-05-27 17:50:11] ID_LIKE="rhel fedora"
[2025-05-27 17:50:11] VERSION_ID="7"
[2025-05-27 17:50:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 17:50:11] ANSI_COLOR="0;31"
[2025-05-27 17:50:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 17:50:11] HOME_URL="https://www.centos.org/"
[2025-05-27 17:50:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 17:50:11] 
[2025-05-27 17:50:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 17:50:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 17:50:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 17:50:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 17:50:11] 
[2025-05-27 17:50:11] 2025-05-27 14:41:20,109 | INFO     | **************************************
[2025-05-27 17:50:11] 2025-05-27 14:41:20,612 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-05-27 17:50:11] 2025-05-27 14:41:20,783 | INFO     | sufficient remaining disk space (495379808256 B)
[2025-05-27 17:50:11] 2025-05-27 14:41:20,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 17:50:11] 2025-05-27 14:41:20,783 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 17:50:11] 2025-05-27 14:41:20,783 | INFO     | update_server=False
[2025-05-27 17:50:11] 2025-05-27 14:41:20,784 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 17:50:11] 2025-05-27 14:41:20,784 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 17:50:11] 2025-05-27 14:41:20,784 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 17:50:11] 2025-05-27 14:41:20,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 17:50:11] 2025-05-27 14:41:20,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 17:50:11] 2025-05-27 14:41:20,785 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 17:50:11] 2025-05-27 14:41:20,785 | INFO     | aborting loop
[2025-05-27 17:50:11] 2025-05-27 14:41:20,873 | INFO     | all data control threads have been joined
[2025-05-27 17:50:11] 2025-05-27 14:41:21,073 | INFO     | all job control threads have been joined
[2025-05-27 17:50:11] 2025-05-27 14:41:21,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 17:50:11] 2025-05-27 14:41:21,537 | INFO     | all payload control threads have been joined
[2025-05-27 17:50:11] 2025-05-27 14:41:21,790 | INFO     | [job] retrieve thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:21,791 | INFO     | [job] job monitor thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:21,853 | INFO     | [payload] failed_post thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:21,879 | INFO     | [data] control thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:21,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 17:50:11] 2025-05-27 14:41:22,004 | INFO     | [data] copytool_in thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,079 | INFO     | [job] control thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,091 | INFO     | [payload] validate_post thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,179 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 17:50:11] 2025-05-27 14:41:22,543 | INFO     | [payload] control thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,702 | INFO     | [job] validate thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:22,962 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:23,096 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:23,426 | INFO     | [job] queue monitor thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:23,918 | INFO     | [data] copytool_out thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:25,301 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:31,324 | INFO     | job.realtimelogging is not enabled
[2025-05-27 17:50:11] 2025-05-27 14:41:32,330 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 17:50:11] 2025-05-27 14:41:33,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380671149888)>', '<ExcThread(monitor, started 140380242691840)>']
[2025-05-27 17:50:11] 2025-05-27 14:41:33,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 17:50:11] 2025-05-27 14:41:33,862 | INFO     | [monitor] control thread has ended
[2025-05-27 17:50:11] 2025-05-27 14:41:38,461 | INFO     | all workflow threads have been joined
[2025-05-27 17:50:11] 2025-05-27 14:41:38,461 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 17:50:11] 2025-05-27 14:41:38,461 | INFO     | traces error code: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:38,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 17:50:11] 2025-05-27 14:41:38,928 [wrapper] ==== pilot stdout END ====
[2025-05-27 17:50:11] 2025-05-27 14:41:39,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 17:50:11] 2025-05-27 14:41:39,094 [wrapper] pilotpid: 23284
[2025-05-27 17:50:11] 2025-05-27 14:41:39,159 [wrapper] Pilot exit status: 0
[2025-05-27 17:50:11] 2025-05-27 14:41:39,639 [wrapper] pandaids: 6666022681
[2025-05-27 17:50:11] 2025-05-27 14:41:40,640 [wrapper] cleanup supervisor_pilot 18310 23285
[2025-05-27 17:50:11] 2025-05-27 14:41:40,770 [wrapper] Test setup, not cleaning
[2025-05-27 17:50:11] 2025-05-27 14:41:40,825 [wrapper] apfmon messages muted
[2025-05-27 17:50:11] 2025-05-27 14:41:40,928 [wrapper] ==== wrapper stdout END ====
[2025-05-27 17:50:11] 2025-05-27 14:41:41,005 [wrapper] ==== wrapper stderr END ====
[2025-05-27 17:50:11]  *** Error codes and diagnostics ***
[2025-05-27 17:50:11]     "exeErrorCode": 0,
[2025-05-27 17:50:11]     "exeErrorDiag": "",
[2025-05-27 17:50:11]     "pilotErrorCode": 0,
[2025-05-27 17:50:11]     "pilotErrorDiag": "",
[2025-05-27 17:50:11]  *** Listing of results directory ***
[2025-05-27 17:50:11] total 426820
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc    495897 May 26 17:09 pilot3.tar.gz
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc      5111 May 26 17:58 queuedata.json
[2025-05-27 17:50:11] -rwx------. 1 boinc boinc     37140 May 26 17:58 runpilot2-wrapper.sh
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc       100 May 27 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 17:50:11] -rwxr-xr-x. 1 boinc boinc      7986 May 27 11:11 run_atlas
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc       105 May 27 11:11 job.xml
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc      6373 May 27 11:11 init_data.xml
[2025-05-27 17:50:11] -rw-r--r--. 2 boinc boinc 225818992 May 27 11:11 EVNT.44871834._002116.pool.root.1
[2025-05-27 17:50:11] -rw-r--r--. 2 boinc boinc     15093 May 27 11:11 start_atlas.sh
[2025-05-27 17:50:11] drwxrwx--x. 2 boinc boinc        68 May 27 11:11 shared
[2025-05-27 17:50:11] -rw-r--r--. 2 boinc boinc    508883 May 27 11:11 input.tar.gz
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc         0 May 27 11:11 boinc_lockfile
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc      2559 May 27 11:11 pandaJob.out
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc    990419 May 27 11:14 agis_schedconf.cvmfs.json
[2025-05-27 17:50:11] drwx------. 4 boinc boinc      4096 May 27 11:15 pilot3
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc 203234218 May 27 16:38 HITS.44871837._053196.pool.root.1
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc       531 May 27 16:38 boinc_task_state.xml
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc      1018 May 27 16:39 memory_monitor_summary.json
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc   1603667 May 27 16:39 agis_ddmendpoints.agis.ALL.json
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc    426012 May 27 16:39 log.44871837._053196.job.log.tgz.1
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc        95 May 27 16:40 pilot_heartbeat.json
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc      7689 May 27 16:41 heartbeat.json
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc      4612 May 27 16:41 pilotlog.txt
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc   1664030 May 27 16:41 log.44871837._053196.job.log.1
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc       357 May 27 16:41 output.list
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc       620 May 27 16:41 runtime_log
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc   2109440 May 27 16:41 result.tar.gz
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc      8673 May 27 16:41 runtime_log.err
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc       657 May 27 16:41 gtBNDmEPpd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ9WKDmN2HyBn.diag
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc      8192 May 27 17:50 boinc_mmap_file
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc        28 May 27 17:50 wrapper_checkpoint.txt
[2025-05-27 17:50:11] -rw-r--r--. 1 boinc boinc     20502 May 27 17:50 stderr.txt
[2025-05-27 17:50:11] HITS file was successfully produced:
[2025-05-27 17:50:11] -rw-------. 1 boinc boinc 203234218 May 27 16:38 shared/HITS.pool.root.1
[2025-05-27 17:50:11]  *** Contents of shared directory: ***
[2025-05-27 17:50:12] total 421576
[2025-05-27 17:50:12] -rw-r--r--. 2 boinc boinc 225818992 May 27 11:11 ATLAS.root_0
[2025-05-27 17:50:12] -rw-r--r--. 2 boinc boinc     15093 May 27 11:11 start_atlas.sh
[2025-05-27 17:50:12] -rw-r--r--. 2 boinc boinc    508883 May 27 11:11 input.tar.gz
[2025-05-27 17:50:12] -rw-------. 1 boinc boinc 203234218 May 27 16:38 HITS.pool.root.1
[2025-05-27 17:50:12] -rw-------. 1 boinc boinc   2109440 May 27 16:41 result.tar.gz
17:50:13 (17920): run_atlas exited; CPU time 74052.540224
17:50:13 (17920): called boinc_finish(0)

</stderr_txt>
]]>

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