Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
01:29:48 (480673): wrapper (7.7.26015): starting
01:29:48 (480673): wrapper: running run_atlas (--nthreads 12)
[2025-05-27 01:29:48] Arguments: --nthreads 12
[2025-05-27 01:29:48] Threads: 12
[2025-05-27 01:29:48] Checking for CVMFS
[2025-05-27 01:29:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 01:29:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 01:29:48] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 01:29:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 01:29:48] 2.12.6.0 434683 113 55168 146461 2 56 3454391 6144001 0 130560 0 120519 99.984 74013 8485 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-05-27 01:29:48] CVMFS is ok
[2025-05-27 01:29:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-27 01:29:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-05-27 01:29:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-05-27 01:29:48] Further information can be found at the LHC@home message board.
[2025-05-27 01:29:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 01:29:48] Checking for apptainer binary...
[2025-05-27 01:29:48] apptainer is not installed, using version from CVMFS
[2025-05-27 01:29:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 01:29:49] Debian-bookworm-latest-amd64-base
[2025-05-27 01:29:49] apptainer works
[2025-05-27 01:29:49] Set ATHENA_PROC_NUMBER=12
[2025-05-27 01:29:49] Set ATHENA_CORE_NUMBER=12
[2025-05-27 01:29:49] Starting ATLAS job with PandaID=6666011645
[2025-05-27 01:29:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 02:25:18]  *** The last 200 lines of the pilot log: ***
[2025-05-27 02:25:18]  filesize=340635
[2025-05-27 02:25:18]  filetype=log
[2025-05-27 02:25:18]  guid=1495b37e-a408-42a8-b449-857a64a606d2
[2025-05-27 02:25:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-27 02:25:18]  is_altstaged=None
[2025-05-27 02:25:18]  is_tar=False
[2025-05-27 02:25:18]  lfn=log.44871837._053108.job.log.tgz.1
[2025-05-27 02:25:18]  mtime=0
[2025-05-27 02:25:18]  protocol_id=None
[2025-05-27 02:25:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-27 02:25:18]  replicas=None
[2025-05-27 02:25:18]  scope=mc23_13p6TeV
[2025-05-27 02:25:18]  status=None
[2025-05-27 02:25:18]  status_code=0
[2025-05-27 02:25:18]  storage_token=
[2025-05-27 02:25:18]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6666011645/log.44871837._053108.job.log.tgz.1
[2025-05-27 02:25:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/1f/log.44871837._053108.job.log.tgz.1
[2025-05-27 02:25:18]  workdir=None
[2025-05-27 02:25:18] ]
[2025-05-27 02:25:18] 2025-05-27 00:24:53,056 | INFO     | transferring file log.44871837._053108.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6666011645/log.44871837._053108.job.log.tgz.1 to /var/lib/boinc
[2025-05-27 02:25:18] 2025-05-27 00:24:53,056 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6666011645/log.44871837._053108.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.448718
[2025-05-27 02:25:18] 2025-05-27 00:24:53,080 | INFO     | adding to output.list: log.44871837._053108.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/1f/log.44871837._053108.job.log.tg
[2025-05-27 02:25:18] 2025-05-27 00:24:53,080 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-27 02:25:18] 2025-05-27 00:24:53,080 | INFO     | summary of transferred files:
[2025-05-27 02:25:18] 2025-05-27 00:24:53,080 | INFO     |  -- lfn=log.44871837._053108.job.log.tgz.1, status_code=0, status=transferred
[2025-05-27 02:25:18] 2025-05-27 00:24:53,080 | INFO     | stage-out finished correctly
[2025-05-27 02:25:18] 2025-05-27 00:24:53,438 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-27 02:25:18] 2025-05-27 00:24:54,223 | INFO     | job 6666011645 has state=finished
[2025-05-27 02:25:18] 2025-05-27 00:24:54,223 | INFO     | preparing for final server update for job 6666011645 in state='finished'
[2025-05-27 02:25:18] 2025-05-27 00:24:54,224 | INFO     | this job has now completed (state=finished)
[2025-05-27 02:25:18] 2025-05-27 00:24:54,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-27 02:25:18] 2025-05-27 00:24:54,224 | INFO     | log transfer has been attempted: DONE
[2025-05-27 02:25:18] 2025-05-27 00:24:54,224 | INFO     | job 6666011645 has finished - writing final server update
[2025-05-27 02:25:18] 2025-05-27 00:24:54,224 | INFO     | total number of processed events: 400 (read)
[2025-05-27 02:25:18] 2025-05-27 00:24:54,226 | INFO     | executing command: lscpu
[2025-05-27 02:25:18] 2025-05-27 00:24:54,246 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-27 02:25:18] 2025-05-27 00:24:55,080 | INFO     | monitor loop #255: job 0:6666011645 is in state 'finished'
[2025-05-27 02:25:18] 2025-05-27 00:24:55,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-27 02:25:18] 2025-05-27 00:24:57,583 | INFO     | monitor loop #256: job 0:6666011645 is in state 'finished'
[2025-05-27 02:25:18] 2025-05-27 00:24:57,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,245 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-27 02:25:18] 2025-05-27 00:24:59,245 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6666011645/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | INFO     | extracted standard info from prmon json
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 02:25:18] 2025-05-27 00:24:59,246 | INFO     | fitting pss+swap vs Time
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | sum of square deviations: 32179208.0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | sum of deviations: -2592956280.0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | mean x: 1748303925.0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | mean y: 3113736.361702128
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | -- intersect: 140879037148.69052
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | intersect: 140879037148.69052
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | chi2: 0.0749124875577387
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | -- intersect: 140879037148.69052
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | current memory leak: -80.58 B/s (using 47 data points, chi2=0.07)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | ..............................
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . Timing measurements:
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . get job = 0 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . initial setup = 1 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . payload setup = 3 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . stage-in = 0 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . payload execution = 3274 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . stage-out = 0 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | . log creation = 0 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,247 | INFO     | ..............................
[2025-05-27 02:25:18] 2025-05-27 00:24:59,725 | INFO     | 
[2025-05-27 02:25:18] 2025-05-27 00:24:59,725 | INFO     | job summary report
[2025-05-27 02:25:18] 2025-05-27 00:24:59,725 | INFO     | --------------------------------------------------
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | PanDA job id: 6666011645
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | task id: 44871837
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | errors: (none)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | pilot state: finished 
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | transexitcode: 0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | exeerrorcode: 0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | exeerrordiag: 
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | exitcode: 0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | exitmsg: OK
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | cpuconsumptiontime: 35579 s
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | nevents: 400
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | neventsw: 0
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | pid: 491023
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | pgrp: 491023
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | corecount: 12
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | event service: False
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | sizes: {0: 2405241, 2: 2405447, 10: 2405475, 3281: 2431094, 3282: 2440105, 3288: 2440219}
[2025-05-27 02:25:18] 2025-05-27 00:24:59,726 | INFO     | --------------------------------------------------
[2025-05-27 02:25:18] 2025-05-27 00:24:59,727 | INFO     | 
[2025-05-27 02:25:18] 2025-05-27 00:24:59,727 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-05-27 02:25:18] 2025-05-27 00:24:59,740 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,740 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,740 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,740 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,740 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 02:25:18] 2025-05-27 00:24:59,741 | INFO     | job 6666011645 has completed (purged errors)
[2025-05-27 02:25:18] 2025-05-27 00:24:59,742 | INFO     | overall cleanup function is called
[2025-05-27 02:25:18] 2025-05-27 00:25:00,749 | INFO     | --- collectZombieJob: --- 10, [491023]
[2025-05-27 02:25:18] 2025-05-27 00:25:00,749 | INFO     | zombie collector waiting for pid 491023
[2025-05-27 02:25:18] 2025-05-27 00:25:00,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 02:25:18] 2025-05-27 00:25:00,749 | INFO     | collected zombie processes
[2025-05-27 02:25:18] 2025-05-27 00:25:00,749 | INFO     | will attempt to kill all subprocesses of pid=491023
[2025-05-27 02:25:18] 2025-05-27 00:25:00,782 | INFO     | process IDs to be killed: [491023] (in reverse order)
[2025-05-27 02:25:18] 2025-05-27 00:25:00,805 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 02:25:18] 2025-05-27 00:25:00,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 02:25:18] 2025-05-27 00:25:00,806 | INFO     | did not find any defunct processes belonging to 491023
[2025-05-27 02:25:18] 2025-05-27 00:25:00,807 | INFO     | did not find any defunct processes belonging to 491023
[2025-05-27 02:25:18] 2025-05-27 00:25:00,807 | INFO     | ready for new job
[2025-05-27 02:25:18] 2025-05-27 00:25:00,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | **************************************
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | **************************************
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | 
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | architecture information:
[2025-05-27 02:25:18] 2025-05-27 00:25:00,808 | INFO     | executing command: cat /etc/os-release
[2025-05-27 02:25:18] 2025-05-27 00:25:00,817 | INFO     | cat /etc/os-release:
[2025-05-27 02:25:18] NAME="CentOS Linux"
[2025-05-27 02:25:18] VERSION="7 (Core)"
[2025-05-27 02:25:18] ID="centos"
[2025-05-27 02:25:18] ID_LIKE="rhel fedora"
[2025-05-27 02:25:18] VERSION_ID="7"
[2025-05-27 02:25:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 02:25:18] ANSI_COLOR="0;31"
[2025-05-27 02:25:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 02:25:18] HOME_URL="https://www.centos.org/"
[2025-05-27 02:25:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 02:25:18] 
[2025-05-27 02:25:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 02:25:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 02:25:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 02:25:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 02:25:18] 
[2025-05-27 02:25:18] 2025-05-27 00:25:00,817 | INFO     | **************************************
[2025-05-27 02:25:18] 2025-05-27 00:25:01,320 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | INFO     | sufficient remaining disk space (822171664384 B)
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | INFO     | update_server=False
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 02:25:18] 2025-05-27 00:25:01,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 02:25:18] 2025-05-27 00:25:01,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 02:25:18] 2025-05-27 00:25:01,335 | INFO     | aborting loop
[2025-05-27 02:25:18] 2025-05-27 00:25:01,427 | INFO     | all payload control threads have been joined
[2025-05-27 02:25:18] 2025-05-27 00:25:01,460 | INFO     | all job control threads have been joined
[2025-05-27 02:25:18] 2025-05-27 00:25:01,722 | INFO     | all data control threads have been joined
[2025-05-27 02:25:18] 2025-05-27 00:25:02,333 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 02:25:18] 2025-05-27 00:25:02,333 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 02:25:18] 2025-05-27 00:25:02,333 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 02:25:18] 2025-05-27 00:25:02,340 | INFO     | [job] retrieve thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,340 | INFO     | [job] job monitor thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,432 | INFO     | [payload] control thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,466 | INFO     | [job] control thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,598 | INFO     | [payload] failed_post thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,669 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,726 | INFO     | [data] control thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:02,849 | INFO     | [data] copytool_in thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:03,237 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:03,326 | INFO     | [payload] validate_post thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:03,328 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:03,337 | INFO     | [data] copytool_out thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:03,477 | INFO     | [job] validate thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:04,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 02:25:18] 2025-05-27 00:25:04,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 02:25:18] 2025-05-27 00:25:05,317 | INFO     | [job] queue monitor thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:08,038 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:11,489 | INFO     | job.realtimelogging is not enabled
[2025-05-27 02:25:18] 2025-05-27 00:25:12,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 02:25:18] 2025-05-27 00:25:13,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857374115648)>', '<ExcThread(monitor, started 139856969701120)>']
[2025-05-27 02:25:18] 2025-05-27 00:25:13,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 02:25:18] 2025-05-27 00:25:13,389 | INFO     | [monitor] control thread has ended
[2025-05-27 02:25:18] 2025-05-27 00:25:18,308 | INFO     | all workflow threads have been joined
[2025-05-27 02:25:18] 2025-05-27 00:25:18,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 02:25:18] 2025-05-27 00:25:18,322 | INFO     | traces error code: 0
[2025-05-27 02:25:18] 2025-05-27 00:25:18,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 02:25:18] 2025-05-27 00:25:18,403 [wrapper] ==== pilot stdout END ====
[2025-05-27 02:25:18] 2025-05-27 00:25:18,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 02:25:18] 2025-05-27 00:25:18,406 [wrapper] pilotpid: 484418
[2025-05-27 02:25:18] 2025-05-27 00:25:18,407 [wrapper] Pilot exit status: 0
[2025-05-27 02:25:18] 2025-05-27 00:25:18,412 [wrapper] pandaids: 6666011645
[2025-05-27 02:25:18] 2025-05-27 00:25:18,427 [wrapper] cleanup supervisor_pilot  500686 484419
[2025-05-27 02:25:18] 2025-05-27 00:25:18,428 [wrapper] Test setup, not cleaning
[2025-05-27 02:25:18] 2025-05-27 00:25:18,430 [wrapper] apfmon messages muted
[2025-05-27 02:25:18] 2025-05-27 00:25:18,431 [wrapper] ==== wrapper stdout END ====
[2025-05-27 02:25:18] 2025-05-27 00:25:18,432 [wrapper] ==== wrapper stderr END ====
[2025-05-27 02:25:18]  *** Error codes and diagnostics ***
[2025-05-27 02:25:18]     "exeErrorCode": 0,
[2025-05-27 02:25:18]     "exeErrorDiag": "",
[2025-05-27 02:25:18]     "pilotErrorCode": 0,
[2025-05-27 02:25:18]     "pilotErrorDiag": "",
[2025-05-27 02:25:18]  *** Listing of results directory ***
[2025-05-27 02:25:18] total 418188
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc    495897 May 26 17:09 pilot3.tar.gz
[2025-05-27 02:25:18] -rwx------ 1 boinc boinc     37140 May 26 17:38 runpilot2-wrapper.sh
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc      5111 May 26 17:38 queuedata.json
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc       100 May 27 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 02:25:18] -rwxr-xr-x 1 boinc boinc      7986 May 27 01:29 run_atlas
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc       105 May 27 01:29 job.xml
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc     15093 May 27 01:29 start_atlas.sh
[2025-05-27 02:25:18] drwxrwx--x 2 boinc boinc      4096 May 27 01:29 shared
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc    508877 May 27 01:29 input.tar.gz
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc      6727 May 27 01:29 init_data.xml
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc 225114934 May 27 01:29 EVNT.44871834._002113.pool.root.1
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc         0 May 27 01:29 boinc_lockfile
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc      2559 May 27 01:29 pandaJob.out
[2025-05-27 02:25:18] -rw------- 1 boinc boinc    990418 May 27 01:29 agis_schedconf.cvmfs.json
[2025-05-27 02:25:18] -rw------- 1 boinc boinc   1603667 May 27 01:29 agis_ddmendpoints.agis.ALL.json
[2025-05-27 02:25:18] drwx------ 4 boinc boinc      4096 May 27 01:29 pilot3
[2025-05-27 02:25:18] -rw------- 1 boinc boinc        95 May 27 02:24 pilot_heartbeat.json
[2025-05-27 02:25:18] -rw------- 1 boinc boinc 197911869 May 27 02:24 HITS.44871837._053108.pool.root.1
[2025-05-27 02:25:18] -rw------- 1 boinc boinc      1012 May 27 02:24 memory_monitor_summary.json
[2025-05-27 02:25:18] -rw------- 1 boinc boinc    340635 May 27 02:24 log.44871837._053108.job.log.tgz.1
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc      8192 May 27 02:24 boinc_mmap_file
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc        27 May 27 02:24 wrapper_checkpoint.txt
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc       529 May 27 02:24 boinc_task_state.xml
[2025-05-27 02:25:18] -rw------- 1 boinc boinc      7691 May 27 02:24 heartbeat.json
[2025-05-27 02:25:18] -rw------- 1 boinc boinc      4433 May 27 02:25 pilotlog.txt
[2025-05-27 02:25:18] -rw------- 1 boinc boinc    338264 May 27 02:25 log.44871837._053108.job.log.1
[2025-05-27 02:25:18] -rw------- 1 boinc boinc       357 May 27 02:25 output.list
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc       620 May 27 02:25 runtime_log
[2025-05-27 02:25:18] -rw------- 1 boinc boinc    696320 May 27 02:25 result.tar.gz
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc      8960 May 27 02:25 runtime_log.err
[2025-05-27 02:25:18] -rw------- 1 boinc boinc       705 May 27 02:25 e9iMDm04od7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMOQKDmi1t2In.diag
[2025-05-27 02:25:18] -rw-r--r-- 1 boinc boinc     21196 May 27 02:25 stderr.txt
[2025-05-27 02:25:18] HITS file was successfully produced:
[2025-05-27 02:25:18] -rw------- 1 boinc boinc 197911869 May 27 02:24 shared/HITS.pool.root.1
[2025-05-27 02:25:18]  *** Contents of shared directory: ***
[2025-05-27 02:25:18] total 414320
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc     15093 May 27 01:29 start_atlas.sh
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc    508877 May 27 01:29 input.tar.gz
[2025-05-27 02:25:18] -rw-r--r-- 2 boinc boinc 225114934 May 27 01:29 ATLAS.root_0
[2025-05-27 02:25:18] -rw------- 1 boinc boinc 197911869 May 27 02:24 HITS.pool.root.1
[2025-05-27 02:25:18] -rw------- 1 boinc boinc    696320 May 27 02:25 result.tar.gz
02:25:20 (480673): run_atlas exited; CPU time 35595.265175
02:25:20 (480673): called boinc_finish(0)

</stderr_txt>
]]>

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