Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:41:24 (28204): wrapper (7.7.26015): starting
07:41:24 (28204): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 07:41:24] Arguments: --nthreads 8
[2025-05-27 07:41:24] Threads: 8
[2025-05-27 07:41:24] Checking for CVMFS
[2025-05-27 07:41:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 07:41:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 07:41:25] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 07:41:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 07:41:26] 2.11.2.0 9859 21300 88276 146469 0 19 25067472 25165824 3840 130560 0 11884878 99.801 13595323 1856 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 07:41:26] CVMFS is ok
[2025-05-27 07:41:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 07:41:26] Checking for apptainer binary...
[2025-05-27 07:41:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 07:41:26] Running /usr/bin/apptainer --version
[2025-05-27 07:41:26] apptainer version 1.3.2-1.el7
[2025-05-27 07:41:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 07:41:31] cg-vwn461.simple-grid.lan
[2025-05-27 07:41:31] apptainer works
[2025-05-27 07:41:31] Set ATHENA_PROC_NUMBER=8
[2025-05-27 07:41:31] Set ATHENA_CORE_NUMBER=8
[2025-05-27 07:41:31] Starting ATLAS job with PandaID=6665989563
[2025-05-27 07:41:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 13:19:55]  *** The last 200 lines of the pilot log: ***
[2025-05-27 13:19:55] 2025-05-27 10:39:20,828 | INFO     | extracted standard info from prmon json
[2025-05-27 13:19:55] 2025-05-27 10:39:20,828 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 13:19:55] 2025-05-27 10:39:20,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 13:19:55] 2025-05-27 10:39:20,828 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 13:19:55] 2025-05-27 10:39:20,828 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 13:19:55] 2025-05-27 10:39:20,837 | INFO     | fitting pss+swap vs Time
[2025-05-27 13:19:55] 2025-05-27 10:39:20,837 | INFO     | sum of square deviations: 6806862510.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,840 | INFO     | sum of deviations: 111468195791.99998
[2025-05-27 13:19:55] 2025-05-27 10:39:20,840 | INFO     | mean x: 1748333695.5
[2025-05-27 13:19:55] 2025-05-27 10:39:20,840 | INFO     | mean y: 2447692.214285714
[2025-05-27 13:19:55] 2025-05-27 10:39:20,840 | INFO     | -- intersect: -28628011993.645428
[2025-05-27 13:19:55] 2025-05-27 10:39:20,840 | INFO     | intersect: -28628011993.645428
[2025-05-27 13:19:55] 2025-05-27 10:39:20,841 | INFO     | chi2: 5.689959336519648
[2025-05-27 13:19:55] 2025-05-27 10:39:20,841 | INFO     | sum of square deviations: 6448679050.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,846 | INFO     | sum of deviations: 128180616258.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,847 | INFO     | mean x: 1748333543.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,847 | INFO     | mean y: 2454690.3527272725
[2025-05-27 13:19:55] 2025-05-27 10:39:20,847 | INFO     | -- intersect: -34749231543.16707
[2025-05-27 13:19:55] 2025-05-27 10:39:20,847 | INFO     | intersect: -34749231543.16707
[2025-05-27 13:19:55] 2025-05-27 10:39:20,848 | INFO     | chi2: 4.917419345871287
[2025-05-27 13:19:55] 2025-05-27 10:39:20,848 | INFO     | current chi2=4.917419345871287 (change=13.577249765037811 %)
[2025-05-27 13:19:55] 2025-05-27 10:39:20,848 | INFO     | right removable region: 274
[2025-05-27 13:19:55] 2025-05-27 10:39:20,848 | INFO     | sum of square deviations: 6448679050.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,850 | INFO     | sum of deviations: 16630744638.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | mean x: 1748333848.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | mean y: 2488025.9927272727
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | -- intersect: -4506356892.884094
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | intersect: -4506356892.884094
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | chi2: 1.2665487331679997
[2025-05-27 13:19:55] 2025-05-27 10:39:20,851 | INFO     | current chi2=1.2665487331679997 (change=77.74063647451823 %)
[2025-05-27 13:19:55] 2025-05-27 10:39:20,852 | INFO     | sum of square deviations: 6103286527.5
[2025-05-27 13:19:55] 2025-05-27 10:39:20,854 | INFO     | sum of deviations: -5452072212.999998
[2025-05-27 13:19:55] 2025-05-27 10:39:20,854 | INFO     | mean x: 1748334000.5
[2025-05-27 13:19:55] 2025-05-27 10:39:20,854 | INFO     | mean y: 2497695.2666666666
[2025-05-27 13:19:55] 2025-05-27 10:39:20,855 | INFO     | -- intersect: 1564286279.2074645
[2025-05-27 13:19:55] 2025-05-27 10:39:20,855 | INFO     | intersect: 1564286279.2074645
[2025-05-27 13:19:55] 2025-05-27 10:39:20,855 | INFO     | chi2: 0.8640837500514865
[2025-05-27 13:19:55] 2025-05-27 10:39:20,855 | INFO     | current chi2=0.8640837500514865 (change=31.776509863132812 %)
[2025-05-27 13:19:55] 2025-05-27 10:39:20,856 | INFO     | sum of square deviations: 5770452380.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,862 | INFO     | sum of deviations: -3938082895.999996
[2025-05-27 13:19:55] 2025-05-27 10:39:20,862 | INFO     | mean x: 1748334153.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,862 | INFO     | mean y: 2496978.0226415093
[2025-05-27 13:19:55] 2025-05-27 10:39:20,862 | INFO     | -- intersect: 1195659033.7888725
[2025-05-27 13:19:55] 2025-05-27 10:39:20,862 | INFO     | intersect: 1195659033.7888725
[2025-05-27 13:19:55] 2025-05-27 10:39:20,863 | INFO     | chi2: 0.8480184151097545
[2025-05-27 13:19:55] 2025-05-27 10:39:20,863 | INFO     | current chi2=0.8480184151097545 (change=1.8592335454491256 %)
[2025-05-27 13:19:55] 2025-05-27 10:39:20,863 | INFO     | left removable region: 30
[2025-05-27 13:19:55] 2025-05-27 10:39:20,863 | INFO     | sum of square deviations: 4504437945.0
[2025-05-27 13:19:55] 2025-05-27 10:39:20,865 | INFO     | sum of deviations: 12115038986.499979
[2025-05-27 13:19:55] 2025-05-27 10:39:20,865 | INFO     | mean x: 1748334427.5
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | mean y: 2506248.0860655736
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | -- intersect: -4699776258.461513
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | intersect: -4699776258.461513
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | chi2: 0.0019153502879731732
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | -- intersect: -4699776258.461513
[2025-05-27 13:19:55] 2025-05-27 10:39:20,866 | INFO     | current memory leak: 2.69 B/s (using 244 data points, chi2=0.00)
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | ..............................
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | . Timing measurements:
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | . get job = 0 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | . initial setup = 11 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | . payload setup = 163 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,867 | INFO     | . stage-in = 0 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,868 | INFO     | . payload execution = 17225 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,868 | INFO     | . stage-out = 4 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,868 | INFO     | . log creation = 1 s
[2025-05-27 13:19:55] 2025-05-27 10:39:20,868 | INFO     | ..............................
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | 
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | job summary report
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | --------------------------------------------------
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | PanDA job id: 6665989563
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | task id: 44871837
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | errors: (none)
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 13:19:55] 2025-05-27 10:39:21,270 | INFO     | pilot state: finished 
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | transexitcode: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | exeerrorcode: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | exeerrordiag: 
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | exitcode: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | exitmsg: OK
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | cpuconsumptiontime: 64497 s
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | nevents: 400
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | neventsw: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | pid: 8566
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | pgrp: 8566
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | corecount: 8
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | event service: False
[2025-05-27 13:19:55] 2025-05-27 10:39:21,271 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 22: 2405238, 33: 2405266, 44: 2405322, 55: 2405478, 65: 2405506, 76: 2405534, 87: 2405590, 90: 2405824, 97: 2406132, 1
[2025-05-27 13:19:55] 2025-05-27 10:39:21,272 | INFO     | --------------------------------------------------
[2025-05-27 13:19:55] 2025-05-27 10:39:21,272 | INFO     | 
[2025-05-27 13:19:55] 2025-05-27 10:39:21,272 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-05-27 13:19:55] 2025-05-27 10:39:21,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | job 6665989563 has completed (purged errors)
[2025-05-27 13:19:55] 2025-05-27 10:39:21,577 | INFO     | overall cleanup function is called
[2025-05-27 13:19:55] 2025-05-27 10:39:22,587 | INFO     | --- collectZombieJob: --- 10, [8566]
[2025-05-27 13:19:55] 2025-05-27 10:39:22,587 | INFO     | zombie collector waiting for pid 8566
[2025-05-27 13:19:55] 2025-05-27 10:39:22,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 13:19:55] 2025-05-27 10:39:22,587 | INFO     | collected zombie processes
[2025-05-27 13:19:55] 2025-05-27 10:39:22,587 | INFO     | will attempt to kill all subprocesses of pid=8566
[2025-05-27 13:19:55] 2025-05-27 10:39:22,698 | INFO     | process IDs to be killed: [8566] (in reverse order)
[2025-05-27 13:19:55] 2025-05-27 10:39:23,406 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 13:19:55] 2025-05-27 10:39:23,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 13:19:55] 2025-05-27 10:39:23,410 | INFO     | did not find any defunct processes belonging to 8566
[2025-05-27 13:19:55] 2025-05-27 10:39:23,413 | INFO     | did not find any defunct processes belonging to 8566
[2025-05-27 13:19:55] 2025-05-27 10:39:23,413 | INFO     | ready for new job
[2025-05-27 13:19:55] 2025-05-27 10:39:23,413 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 13:19:55] 2025-05-27 10:39:23,418 | INFO     | **************************************
[2025-05-27 13:19:55] 2025-05-27 10:39:23,418 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 13:19:55] 2025-05-27 10:39:23,419 | INFO     | **************************************
[2025-05-27 13:19:55] 2025-05-27 10:39:23,419 | INFO     | 
[2025-05-27 13:19:55] 2025-05-27 10:39:23,419 | INFO     | pilot is running in a VM
[2025-05-27 13:19:55] 2025-05-27 10:39:23,419 | INFO     | architecture information:
[2025-05-27 13:19:55] 2025-05-27 10:39:23,435 | INFO     | executing command: cat /etc/os-release
[2025-05-27 13:19:55] 2025-05-27 10:39:23,821 | INFO     | cat /etc/os-release:
[2025-05-27 13:19:55] NAME="CentOS Linux"
[2025-05-27 13:19:55] VERSION="7 (Core)"
[2025-05-27 13:19:55] ID="centos"
[2025-05-27 13:19:55] ID_LIKE="rhel fedora"
[2025-05-27 13:19:55] VERSION_ID="7"
[2025-05-27 13:19:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 13:19:55] ANSI_COLOR="0;31"
[2025-05-27 13:19:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 13:19:55] HOME_URL="https://www.centos.org/"
[2025-05-27 13:19:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 13:19:55] 
[2025-05-27 13:19:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 13:19:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 13:19:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 13:19:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 13:19:55] 
[2025-05-27 13:19:55] 2025-05-27 10:39:23,822 | INFO     | **************************************
[2025-05-27 13:19:55] 2025-05-27 10:39:24,325 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-05-27 13:19:55] 2025-05-27 10:39:24,563 | INFO     | sufficient remaining disk space (494311309312 B)
[2025-05-27 13:19:55] 2025-05-27 10:39:24,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 13:19:55] 2025-05-27 10:39:24,564 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 13:19:55] 2025-05-27 10:39:24,564 | INFO     | update_server=False
[2025-05-27 13:19:55] 2025-05-27 10:39:24,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 13:19:55] 2025-05-27 10:39:24,564 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 13:19:55] 2025-05-27 10:39:24,565 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 13:19:55] 2025-05-27 10:39:24,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 13:19:55] 2025-05-27 10:39:24,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 13:19:55] 2025-05-27 10:39:24,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 13:19:55] 2025-05-27 10:39:24,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 13:19:55] 2025-05-27 10:39:24,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 13:19:55] 2025-05-27 10:39:24,572 | INFO     | aborting loop
[2025-05-27 13:19:55] 2025-05-27 10:39:25,268 | INFO     | all data control threads have been joined
[2025-05-27 13:19:55] 2025-05-27 10:39:25,307 | INFO     | all payload control threads have been joined
[2025-05-27 13:19:55] 2025-05-27 10:39:25,570 | INFO     | [job] retrieve thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:25,574 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:25,578 | INFO     | [job] job monitor thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:25,708 | INFO     | [job] validate thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:25,787 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,015 | INFO     | all job control threads have been joined
[2025-05-27 13:19:55] 2025-05-27 10:39:26,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 13:19:55] 2025-05-27 10:39:26,263 | INFO     | [payload] validate_post thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,274 | INFO     | [data] control thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,313 | INFO     | [payload] control thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,509 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,548 | INFO     | [data] copytool_in thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:26,575 | INFO     | [data] copytool_out thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:27,021 | INFO     | [job] control thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:27,060 | INFO     | [payload] failed_post thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:27,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:27,076 | INFO     | [job] queue monitor thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:28,578 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 13:19:55] 2025-05-27 10:39:29,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118044006208)>', '<ExcThread(monitor, started 140117461165824)>']
[2025-05-27 13:19:55] 2025-05-27 10:39:29,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 13:19:55] 2025-05-27 10:39:29,596 | INFO     | [monitor] control thread has ended
[2025-05-27 13:19:55] 2025-05-27 10:39:34,406 | INFO     | all workflow threads have been joined
[2025-05-27 13:19:55] 2025-05-27 10:39:34,406 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 13:19:55] 2025-05-27 10:39:34,406 | INFO     | traces error code: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:34,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 13:19:55] 2025-05-27 10:39:34,710 [wrapper] ==== pilot stdout END ====
[2025-05-27 13:19:55] 2025-05-27 10:39:34,820 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 13:19:55] 2025-05-27 10:39:34,910 [wrapper] pilotpid: 1991
[2025-05-27 13:19:55] 2025-05-27 10:39:34,995 [wrapper] Pilot exit status: 0
[2025-05-27 13:19:55] 2025-05-27 10:39:35,259 [wrapper] pandaids: 6665989563
[2025-05-27 13:19:55] 2025-05-27 10:39:35,739 [wrapper] cleanup supervisor_pilot 10529 1992
[2025-05-27 13:19:55] 2025-05-27 10:39:35,832 [wrapper] Test setup, not cleaning
[2025-05-27 13:19:55] 2025-05-27 10:39:35,910 [wrapper] apfmon messages muted
[2025-05-27 13:19:55] 2025-05-27 10:39:35,987 [wrapper] ==== wrapper stdout END ====
[2025-05-27 13:19:55] 2025-05-27 10:39:36,060 [wrapper] ==== wrapper stderr END ====
[2025-05-27 13:19:55]  *** Error codes and diagnostics ***
[2025-05-27 13:19:55]     "exeErrorCode": 0,
[2025-05-27 13:19:55]     "exeErrorDiag": "",
[2025-05-27 13:19:55]     "pilotErrorCode": 0,
[2025-05-27 13:19:55]     "pilotErrorDiag": "",
[2025-05-27 13:19:55]  *** Listing of results directory ***
[2025-05-27 13:19:55] total 419152
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc    503527 Apr  3 09:42 pilot3.tar.gz
[2025-05-27 13:19:55] -rwx------. 1 boinc boinc     37140 May 26 15:17 runpilot2-wrapper.sh
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc      5111 May 26 15:17 queuedata.json
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc       100 May 27 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 13:19:55] -rwxr-xr-x. 1 boinc boinc      7986 May 27 07:41 run_atlas
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc       105 May 27 07:41 job.xml
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc      6373 May 27 07:41 init_data.xml
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc 222739937 May 27 07:41 EVNT.44871834._000637.pool.root.1
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc     15093 May 27 07:41 start_atlas.sh
[2025-05-27 13:19:55] drwxrwx--x. 2 boinc boinc        68 May 27 07:41 shared
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc    517095 May 27 07:41 input.tar.gz
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc         0 May 27 07:41 boinc_lockfile
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc      2557 May 27 07:41 pandaJob.out
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc    990410 May 27 07:44 agis_schedconf.cvmfs.json
[2025-05-27 13:19:55] drwx------. 4 boinc boinc      4096 May 27 07:44 pilot3
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc 198786182 May 27 12:36 HITS.44871837._051194.pool.root.1
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc       530 May 27 12:36 boinc_task_state.xml
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc      1019 May 27 12:37 memory_monitor_summary.json
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc   1603667 May 27 12:37 agis_ddmendpoints.agis.ALL.json
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc    412163 May 27 12:37 log.44871837._051194.job.log.tgz.1
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc      7691 May 27 12:39 heartbeat.json
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc        95 May 27 12:39 pilot_heartbeat.json
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc      4540 May 27 12:39 pilotlog.txt
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc   1510581 May 27 12:39 log.44871837._051194.job.log.1
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc       357 May 27 12:39 output.list
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc       620 May 27 12:39 runtime_log
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc   1945600 May 27 12:39 result.tar.gz
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc      8673 May 27 12:39 runtime_log.err
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc       657 May 27 12:39 opMODmssmd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEBQKDmoR2OSn.diag
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc        28 May 27 13:19 wrapper_checkpoint.txt
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc      8192 May 27 13:19 boinc_mmap_file
[2025-05-27 13:19:55] -rw-r--r--. 1 boinc boinc     20515 May 27 13:19 stderr.txt
[2025-05-27 13:19:55] HITS file was successfully produced:
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc 198786182 May 27 12:36 shared/HITS.pool.root.1
[2025-05-27 13:19:55]  *** Contents of shared directory: ***
[2025-05-27 13:19:55] total 414072
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc 222739937 May 27 07:41 ATLAS.root_0
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc     15093 May 27 07:41 start_atlas.sh
[2025-05-27 13:19:55] -rw-r--r--. 2 boinc boinc    517095 May 27 07:41 input.tar.gz
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc 198786182 May 27 12:36 HITS.pool.root.1
[2025-05-27 13:19:55] -rw-------. 1 boinc boinc   1945600 May 27 12:39 result.tar.gz
13:19:57 (28204): run_atlas exited; CPU time 64718.349252
13:19:57 (28204): called boinc_finish(0)

</stderr_txt>
]]>

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