Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:16:15 (6459): wrapper (7.7.26015): starting
04:16:15 (6459): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 04:16:15] Arguments: --nthreads 8
[2025-05-27 04:16:15] Threads: 8
[2025-05-27 04:16:15] Checking for CVMFS
[2025-05-27 04:16:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 04:16:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 04:16:18] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 04:16:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 04:16:19] 2.11.2.0 347 21038 89024 146464 0 16 23118306 25165825 4235 130560 0 11515319 99.799 13206860 2372 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 04:16:19] CVMFS is ok
[2025-05-27 04:16:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 04:16:19] Checking for apptainer binary...
[2025-05-27 04:16:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 04:16:19] Running /usr/bin/apptainer --version
[2025-05-27 04:16:19] apptainer version 1.3.2-1.el7
[2025-05-27 04:16:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 04:19:52] cg-vwn289.simple-grid.lan
[2025-05-27 04:19:52] apptainer works
[2025-05-27 04:19:52] Set ATHENA_PROC_NUMBER=8
[2025-05-27 04:19:52] Set ATHENA_CORE_NUMBER=8
[2025-05-27 04:19:52] Starting ATLAS job with PandaID=6665935407
[2025-05-27 04:19:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 10:10:39]  *** The last 200 lines of the pilot log: ***
[2025-05-27 10:10:39] 2025-05-27 07:22:22,978 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6665935407/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 10:10:39] 2025-05-27 07:22:22,979 | INFO     | extracted standard info from prmon json
[2025-05-27 10:10:39] 2025-05-27 07:22:22,979 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 10:10:39] 2025-05-27 07:22:22,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 10:10:39] 2025-05-27 07:22:22,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 10:10:39] 2025-05-27 07:22:22,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 10:10:39] 2025-05-27 07:22:22,985 | INFO     | fitting pss+swap vs Time
[2025-05-27 10:10:39] 2025-05-27 07:22:22,986 | INFO     | sum of square deviations: 7960484140.0
[2025-05-27 10:10:39] 2025-05-27 07:22:22,989 | INFO     | sum of deviations: -18794952475.000004
[2025-05-27 10:10:39] 2025-05-27 07:22:22,989 | INFO     | mean x: 1748321459.0
[2025-05-27 10:10:39] 2025-05-27 07:22:22,989 | INFO     | mean y: 2494068.5016949154
[2025-05-27 10:10:39] 2025-05-27 07:22:22,989 | INFO     | -- intersect: 4130335812.1732883
[2025-05-27 10:10:39] 2025-05-27 07:22:22,990 | INFO     | intersect: 4130335812.1732883
[2025-05-27 10:10:39] 2025-05-27 07:22:22,990 | INFO     | chi2: 2.3973876485030354
[2025-05-27 10:10:39] 2025-05-27 07:22:23,000 | INFO     | sum of square deviations: 7562532492.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,003 | INFO     | sum of deviations: 1072322019.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,003 | INFO     | mean x: 1748321306.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,003 | INFO     | mean y: 2501579.4034482758
[2025-05-27 10:10:39] 2025-05-27 07:22:23,003 | INFO     | -- intersect: -245399958.3393938
[2025-05-27 10:10:39] 2025-05-27 07:22:23,003 | INFO     | intersect: -245399958.3393938
[2025-05-27 10:10:39] 2025-05-27 07:22:23,004 | INFO     | chi2: 1.6286695146091896
[2025-05-27 10:10:39] 2025-05-27 07:22:23,004 | INFO     | current chi2=1.6286695146091896 (change=32.0648241586564 %)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,004 | INFO     | sum of square deviations: 7178069470.0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,007 | INFO     | sum of deviations: 1134618909.999997
[2025-05-27 10:10:39] 2025-05-27 07:22:23,007 | INFO     | mean x: 1748321154.0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | mean y: 2501604.10877193
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | -- intersect: -273851007.18483496
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | intersect: -273851007.18483496
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | chi2: 1.6287821415301191
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | current chi2=1.6287821415301191 (change=-0.006915271632411532 %)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,008 | INFO     | right removable region: 284
[2025-05-27 10:10:39] 2025-05-27 07:22:23,009 | INFO     | sum of square deviations: 7562532492.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,012 | INFO     | sum of deviations: -65833651559.499985
[2025-05-27 10:10:39] 2025-05-27 07:22:23,012 | INFO     | mean x: 1748321611.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,012 | INFO     | mean y: 2511965.9275862067
[2025-05-27 10:10:39] 2025-05-27 07:22:23,012 | INFO     | -- intersect: 15222069157.857824
[2025-05-27 10:10:39] 2025-05-27 07:22:23,012 | INFO     | intersect: 15222069157.857824
[2025-05-27 10:10:39] 2025-05-27 07:22:23,020 | INFO     | chi2: 0.9096276869318669
[2025-05-27 10:10:39] 2025-05-27 07:22:23,020 | INFO     | current chi2=0.9096276869318669 (change=62.057546784315335 %)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,021 | INFO     | sum of square deviations: 7178069470.0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,023 | INFO     | sum of deviations: -69714443408.00002
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | mean x: 1748321764.0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | mean y: 2513504.6736842105
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | -- intersect: 16982466009.278347
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | intersect: 16982466009.278347
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | chi2: 0.8916875381950975
[2025-05-27 10:10:39] 2025-05-27 07:22:23,024 | INFO     | current chi2=0.8916875381950975 (change=1.9722518338553132 %)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,025 | INFO     | left removable region: 20
[2025-05-27 10:10:39] 2025-05-27 07:22:23,025 | INFO     | sum of square deviations: 5705372090.0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,027 | INFO     | sum of deviations: -32700740431.999996
[2025-05-27 10:10:39] 2025-05-27 07:22:23,028 | INFO     | mean x: 1748321733.5
[2025-05-27 10:10:39] 2025-05-27 07:22:23,028 | INFO     | mean y: 2514907.2803030303
[2025-05-27 10:10:39] 2025-05-27 07:22:23,028 | INFO     | -- intersect: 10023143587.925701
[2025-05-27 10:10:39] 2025-05-27 07:22:23,028 | INFO     | intersect: 10023143587.925701
[2025-05-27 10:10:39] 2025-05-27 07:22:23,028 | INFO     | chi2: 0.07530087924044648
[2025-05-27 10:10:39] 2025-05-27 07:22:23,029 | INFO     | -- intersect: 10023143587.925701
[2025-05-27 10:10:39] 2025-05-27 07:22:23,029 | INFO     | current memory leak: -5.73 B/s (using 264 data points, chi2=0.08)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | ..............................
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . Timing measurements:
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . get job = 0 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . initial setup = 2 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . payload setup = 13 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . stage-in = 0 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . payload execution = 17971 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . stage-out = 4 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | . log creation = 1 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,030 | INFO     | ..............................
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | 
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | job summary report
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | --------------------------------------------------
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | PanDA job id: 6665935407
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | task id: 44871837
[2025-05-27 10:10:39] 2025-05-27 07:22:23,680 | INFO     | errors: (none)
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | pilot state: finished 
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | transexitcode: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | exeerrorcode: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | exeerrordiag: 
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | exitcode: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | exitmsg: OK
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | cpuconsumptiontime: 68589 s
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | nevents: 400
[2025-05-27 10:10:39] 2025-05-27 07:22:23,681 | INFO     | neventsw: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | pid: 24953
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | pgrp: 24953
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | corecount: 8
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | event service: False
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | sizes: {0: 2405234, 1: 2405234, 8: 2405468, 11: 2405496, 17989: 2437167, 17993: 2446108, 17996: 2446292, 18084: 2446462}
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | --------------------------------------------------
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | 
[2025-05-27 10:10:39] 2025-05-27 07:22:23,682 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-27 10:10:39] 2025-05-27 07:22:24,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 10:10:39] 2025-05-27 07:22:24,253 | INFO     | job 6665935407 has completed (purged errors)
[2025-05-27 10:10:39] 2025-05-27 07:22:24,254 | INFO     | overall cleanup function is called
[2025-05-27 10:10:39] 2025-05-27 07:22:25,263 | INFO     | --- collectZombieJob: --- 10, [24953]
[2025-05-27 10:10:39] 2025-05-27 07:22:25,263 | INFO     | zombie collector waiting for pid 24953
[2025-05-27 10:10:39] 2025-05-27 07:22:25,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 10:10:39] 2025-05-27 07:22:25,263 | INFO     | collected zombie processes
[2025-05-27 10:10:39] 2025-05-27 07:22:25,263 | INFO     | will attempt to kill all subprocesses of pid=24953
[2025-05-27 10:10:39] 2025-05-27 07:22:25,383 | INFO     | process IDs to be killed: [24953] (in reverse order)
[2025-05-27 10:10:39] 2025-05-27 07:22:26,097 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 10:10:39] 2025-05-27 07:22:26,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 10:10:39] 2025-05-27 07:22:26,101 | INFO     | did not find any defunct processes belonging to 24953
[2025-05-27 10:10:39] 2025-05-27 07:22:26,104 | INFO     | did not find any defunct processes belonging to 24953
[2025-05-27 10:10:39] 2025-05-27 07:22:26,104 | INFO     | ready for new job
[2025-05-27 10:10:39] 2025-05-27 07:22:26,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 10:10:39] 2025-05-27 07:22:26,107 | INFO     | **************************************
[2025-05-27 10:10:39] 2025-05-27 07:22:26,107 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 10:10:39] 2025-05-27 07:22:26,107 | INFO     | **************************************
[2025-05-27 10:10:39] 2025-05-27 07:22:26,107 | INFO     | 
[2025-05-27 10:10:39] 2025-05-27 07:22:26,108 | INFO     | pilot is running in a VM
[2025-05-27 10:10:39] 2025-05-27 07:22:26,108 | INFO     | architecture information:
[2025-05-27 10:10:39] 2025-05-27 07:22:26,112 | INFO     | executing command: cat /etc/os-release
[2025-05-27 10:10:39] 2025-05-27 07:22:26,387 | INFO     | cat /etc/os-release:
[2025-05-27 10:10:39] NAME="CentOS Linux"
[2025-05-27 10:10:39] VERSION="7 (Core)"
[2025-05-27 10:10:39] ID="centos"
[2025-05-27 10:10:39] ID_LIKE="rhel fedora"
[2025-05-27 10:10:39] VERSION_ID="7"
[2025-05-27 10:10:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 10:10:39] ANSI_COLOR="0;31"
[2025-05-27 10:10:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 10:10:39] HOME_URL="https://www.centos.org/"
[2025-05-27 10:10:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 10:10:39] 
[2025-05-27 10:10:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 10:10:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 10:10:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 10:10:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 10:10:39] 
[2025-05-27 10:10:39] 2025-05-27 07:22:26,388 | INFO     | **************************************
[2025-05-27 10:10:39] 2025-05-27 07:22:26,891 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-27 10:10:39] 2025-05-27 07:22:27,027 | INFO     | sufficient remaining disk space (494489567232 B)
[2025-05-27 10:10:39] 2025-05-27 07:22:27,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 10:10:39] 2025-05-27 07:22:27,027 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 10:10:39] 2025-05-27 07:22:27,027 | INFO     | update_server=False
[2025-05-27 10:10:39] 2025-05-27 07:22:27,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 10:10:39] 2025-05-27 07:22:27,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 10:10:39] 2025-05-27 07:22:27,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 10:10:39] 2025-05-27 07:22:27,488 | INFO     | aborting loop
[2025-05-27 10:10:39] 2025-05-27 07:22:27,527 | INFO     | all payload control threads have been joined
[2025-05-27 10:10:39] 2025-05-27 07:22:27,646 | INFO     | all data control threads have been joined
[2025-05-27 10:10:39] 2025-05-27 07:22:27,784 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 10:10:39] 2025-05-27 07:22:27,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 10:10:39] 2025-05-27 07:22:27,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 10:10:39] 2025-05-27 07:22:28,034 | INFO     | [job] retrieve thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,104 | INFO     | [job] validate thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,171 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,216 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 10:10:39] 2025-05-27 07:22:28,256 | INFO     | all job control threads have been joined
[2025-05-27 10:10:39] 2025-05-27 07:22:28,294 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 10:10:39] 2025-05-27 07:22:28,494 | INFO     | [job] job monitor thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,532 | INFO     | [payload] control thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,652 | INFO     | [data] control thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,781 | INFO     | [payload] validate_post thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,827 | INFO     | [data] copytool_in thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:28,937 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:29,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:29,222 | INFO     | [job] queue monitor thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:29,262 | INFO     | [job] control thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:29,276 | INFO     | [payload] failed_post thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:30,458 | INFO     | [data] copytool_out thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:31,236 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 10:10:39] 2025-05-27 07:22:31,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139947657975616)>', '<ExcThread(monitor, started 139947063367424)>']
[2025-05-27 10:10:39] 2025-05-27 07:22:31,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 10:10:39] 2025-05-27 07:22:31,808 | INFO     | [monitor] control thread has ended
[2025-05-27 10:10:39] 2025-05-27 07:22:36,484 | INFO     | all workflow threads have been joined
[2025-05-27 10:10:39] 2025-05-27 07:22:36,484 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 10:10:39] 2025-05-27 07:22:36,484 | INFO     | traces error code: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:36,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 10:10:39] 2025-05-27 07:22:36,822 [wrapper] ==== pilot stdout END ====
[2025-05-27 10:10:39] 2025-05-27 07:22:36,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 10:10:39] 2025-05-27 07:22:36,919 [wrapper] pilotpid: 16461
[2025-05-27 10:10:39] 2025-05-27 07:22:36,955 [wrapper] Pilot exit status: 0
[2025-05-27 10:10:39] 2025-05-27 07:22:37,294 [wrapper] pandaids: 6665935407
[2025-05-27 10:10:39] 2025-05-27 07:22:38,157 [wrapper] cleanup supervisor_pilot  7642 16462
[2025-05-27 10:10:39] 2025-05-27 07:22:38,287 [wrapper] Test setup, not cleaning
[2025-05-27 10:10:39] 2025-05-27 07:22:38,405 [wrapper] apfmon messages muted
[2025-05-27 10:10:39] 2025-05-27 07:22:38,468 [wrapper] ==== wrapper stdout END ====
[2025-05-27 10:10:39] 2025-05-27 07:22:38,541 [wrapper] ==== wrapper stderr END ====
[2025-05-27 10:10:39]  *** Error codes and diagnostics ***
[2025-05-27 10:10:39]     "exeErrorCode": 0,
[2025-05-27 10:10:39]     "exeErrorDiag": "",
[2025-05-27 10:10:39]     "pilotErrorCode": 0,
[2025-05-27 10:10:39]     "pilotErrorDiag": "",
[2025-05-27 10:10:39]  *** Listing of results directory ***
[2025-05-27 10:10:39] total 414940
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc    495897 May 26 13:47 pilot3.tar.gz
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc      5111 May 26 13:53 queuedata.json
[2025-05-27 10:10:39] -rwx------. 1 boinc boinc     37140 May 26 13:53 runpilot2-wrapper.sh
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc       100 May 27 04:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 10:10:39] -rwxr-xr-x. 1 boinc boinc      7986 May 27 04:16 run_atlas
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc       105 May 27 04:16 job.xml
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc      6371 May 27 04:16 init_data.xml
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc 222739891 May 27 04:16 EVNT.44871834._002007.pool.root.1
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc     15093 May 27 04:16 start_atlas.sh
[2025-05-27 10:10:39] drwxrwx--x. 2 boinc boinc        68 May 27 04:16 shared
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc    508874 May 27 04:16 input.tar.gz
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc         0 May 27 04:16 boinc_lockfile
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc      2559 May 27 04:19 pandaJob.out
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc    990410 May 27 04:20 agis_schedconf.cvmfs.json
[2025-05-27 10:10:39] drwx------. 4 boinc boinc      4096 May 27 04:20 pilot3
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc 194408491 May 27 09:19 HITS.44871837._050390.pool.root.1
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc       531 May 27 09:19 boinc_task_state.xml
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc      1017 May 27 09:20 memory_monitor_summary.json
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc   1603667 May 27 09:20 agis_ddmendpoints.agis.ALL.json
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc    416458 May 27 09:20 log.44871837._050390.job.log.tgz.1
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc        95 May 27 09:22 pilot_heartbeat.json
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc      7689 May 27 09:22 heartbeat.json
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc      4416 May 27 09:22 pilotlog.txt
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc   1545726 May 27 09:22 log.44871837._050390.job.log.1
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc       357 May 27 09:22 output.list
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc       620 May 27 09:22 runtime_log
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc   1976320 May 27 09:22 result.tar.gz
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc      8659 May 27 09:22 runtime_log.err
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc       657 May 27 09:22 3bwNDmvZld7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWjWKDmxpeF0m.diag
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc      8192 May 27 10:10 boinc_mmap_file
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc        28 May 27 10:10 wrapper_checkpoint.txt
[2025-05-27 10:10:39] -rw-r--r--. 1 boinc boinc     20499 May 27 10:10 stderr.txt
[2025-05-27 10:10:39] HITS file was successfully produced:
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc 194408491 May 27 09:19 shared/HITS.pool.root.1
[2025-05-27 10:10:39]  *** Contents of shared directory: ***
[2025-05-27 10:10:39] total 409824
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc 222739891 May 27 04:16 ATLAS.root_0
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc     15093 May 27 04:16 start_atlas.sh
[2025-05-27 10:10:39] -rw-r--r--. 2 boinc boinc    508874 May 27 04:16 input.tar.gz
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc 194408491 May 27 09:19 HITS.pool.root.1
[2025-05-27 10:10:39] -rw-------. 1 boinc boinc   1976320 May 27 09:22 result.tar.gz
10:10:41 (6459): run_atlas exited; CPU time 68823.218885
10:10:41 (6459): called boinc_finish(0)

</stderr_txt>
]]>

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