Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:26 (6968): wrapper (7.7.26015): starting
05:35:26 (6968): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 05:35:26] Arguments: --nthreads 8
[2025-05-27 05:35:26] Threads: 8
[2025-05-27 05:35:26] Checking for CVMFS
[2025-05-27 05:35:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 05:35:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 05:35:27] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 05:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 05:35:28] 2.11.2.0 1855 21162 96976 146467 1 59 19104480 25165824 3840 130560 0 12034728 99.787 13628467 1755 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 05:35:28] CVMFS is ok
[2025-05-27 05:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 05:35:28] Checking for apptainer binary...
[2025-05-27 05:35:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 05:35:28] Running /usr/bin/apptainer --version
[2025-05-27 05:35:28] apptainer version 1.3.2-1.el7
[2025-05-27 05:35:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 05:35:39] cg-vwn348.simple-grid.lan
[2025-05-27 05:35:39] apptainer works
[2025-05-27 05:35:39] Set ATHENA_PROC_NUMBER=8
[2025-05-27 05:35:39] Set ATHENA_CORE_NUMBER=8
[2025-05-27 05:35:39] Starting ATLAS job with PandaID=6665933863
[2025-05-27 05:35:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 12:47:23]  *** The last 200 lines of the pilot log: ***
[2025-05-27 12:47:23] 2025-05-27 09:00:45,781 | INFO     | monitor loop #1365: job 0:6665933863 is in state 'finished'
[2025-05-27 12:47:23] 2025-05-27 09:00:45,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-27 12:47:23] 2025-05-27 09:00:48,290 | INFO     | monitor loop #1366: job 0:6665933863 is in state 'finished'
[2025-05-27 12:47:23] 2025-05-27 09:00:48,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,641 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-27 12:47:23] 2025-05-27 09:00:50,641 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6665933863/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,642 | INFO     | extracted standard info from prmon json
[2025-05-27 12:47:23] 2025-05-27 09:00:50,642 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 12:47:23] 2025-05-27 09:00:50,642 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 12:47:23] 2025-05-27 09:00:50,643 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 12:47:23] 2025-05-27 09:00:50,643 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 12:47:23] 2025-05-27 09:00:50,649 | INFO     | fitting pss+swap vs Time
[2025-05-27 12:47:23] 2025-05-27 09:00:50,650 | INFO     | sum of square deviations: 9148487810.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,653 | INFO     | sum of deviations: 7994401542.999995
[2025-05-27 12:47:23] 2025-05-27 09:00:50,653 | INFO     | mean x: 1748326953.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,653 | INFO     | mean y: 2506955.475728155
[2025-05-27 12:47:23] 2025-05-27 09:00:50,653 | INFO     | -- intersect: -1525267686.7393417
[2025-05-27 12:47:23] 2025-05-27 09:00:50,653 | INFO     | intersect: -1525267686.7393417
[2025-05-27 12:47:23] 2025-05-27 09:00:50,654 | INFO     | chi2: 1.798529183956283
[2025-05-27 12:47:23] 2025-05-27 09:00:50,654 | INFO     | sum of square deviations: 8711530780.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,657 | INFO     | sum of deviations: 7762127664.499994
[2025-05-27 12:47:23] 2025-05-27 09:00:50,657 | INFO     | mean x: 1748326800.5
[2025-05-27 12:47:23] 2025-05-27 09:00:50,657 | INFO     | mean y: 2506874.4046052634
[2025-05-27 12:47:23] 2025-05-27 09:00:50,658 | INFO     | -- intersect: -1555283158.9961393
[2025-05-27 12:47:23] 2025-05-27 09:00:50,658 | INFO     | intersect: -1555283158.9961393
[2025-05-27 12:47:23] 2025-05-27 09:00:50,658 | INFO     | chi2: 1.7986678261314049
[2025-05-27 12:47:23] 2025-05-27 09:00:50,658 | INFO     | current chi2=1.7986678261314049 (change=-0.0077086419480257426 %)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,658 | INFO     | right removable region: 303
[2025-05-27 12:47:23] 2025-05-27 09:00:50,659 | INFO     | sum of square deviations: 8711530780.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,662 | INFO     | sum of deviations: -43800463881.5
[2025-05-27 12:47:23] 2025-05-27 09:00:50,662 | INFO     | mean x: 1748327105.5
[2025-05-27 12:47:23] 2025-05-27 09:00:50,662 | INFO     | mean y: 2524911.9440789474
[2025-05-27 12:47:23] 2025-05-27 09:00:50,662 | INFO     | -- intersect: 8792890253.166025
[2025-05-27 12:47:23] 2025-05-27 09:00:50,662 | INFO     | intersect: 8792890253.166025
[2025-05-27 12:47:23] 2025-05-27 09:00:50,663 | INFO     | chi2: 0.2120860890771067
[2025-05-27 12:47:23] 2025-05-27 09:00:50,663 | INFO     | current chi2=0.2120860890771067 (change=88.2078038561168 %)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,664 | INFO     | sum of square deviations: 8288713550.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,666 | INFO     | sum of deviations: -40863266576.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,666 | INFO     | mean x: 1748327258.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | mean y: 2523832.949832776
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | -- intersect: 8621757972.817186
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | intersect: 8621757972.817186
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | chi2: 0.19672199181033811
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | current chi2=0.19672199181033811 (change=7.244273933111546 %)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,667 | INFO     | left removable region: 20
[2025-05-27 12:47:23] 2025-05-27 09:00:50,668 | INFO     | sum of square deviations: 7028008982.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,670 | INFO     | sum of deviations: -20883572772.000004
[2025-05-27 12:47:23] 2025-05-27 09:00:50,671 | INFO     | mean x: 1748327380.0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,671 | INFO     | mean y: 2516429.5830388693
[2025-05-27 12:47:23] 2025-05-27 09:00:50,671 | INFO     | -- intersect: 5197632452.203698
[2025-05-27 12:47:23] 2025-05-27 09:00:50,671 | INFO     | intersect: 5197632452.203698
[2025-05-27 12:47:23] 2025-05-27 09:00:50,672 | INFO     | chi2: 0.14589338117075693
[2025-05-27 12:47:23] 2025-05-27 09:00:50,672 | INFO     | -- intersect: 5197632452.203698
[2025-05-27 12:47:23] 2025-05-27 09:00:50,672 | INFO     | current memory leak: -2.97 B/s (using 283 data points, chi2=0.15)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | ..............................
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . Timing measurements:
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . get job = 0 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . initial setup = 7 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . payload setup = 104 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . stage-in = 0 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . payload execution = 18974 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . stage-out = 1 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | . log creation = 0 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,673 | INFO     | ..............................
[2025-05-27 12:47:23] 2025-05-27 09:00:50,794 | INFO     | 
[2025-05-27 12:47:23] 2025-05-27 09:00:50,794 | INFO     | job summary report
[2025-05-27 12:47:23] 2025-05-27 09:00:50,794 | INFO     | --------------------------------------------------
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | PanDA job id: 6665933863
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | task id: 44871837
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | errors: (none)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | pilot state: finished 
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | transexitcode: 0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | exeerrorcode: 0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | exeerrordiag: 
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | exitcode: 0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | exitmsg: OK
[2025-05-27 12:47:23] 2025-05-27 09:00:50,795 | INFO     | cpuconsumptiontime: 71113 s
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | nevents: 400
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | neventsw: 0
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | pid: 18591
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | pgrp: 18591
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | corecount: 8
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | event service: False
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | sizes: {0: 2404406, 1: 2405092, 2: 2405291, 13: 2405291, 23: 2405347, 34: 2405375, 45: 2405531, 56: 2405559, 66: 2405587, 77: 2405615, 88: 2405671, 93: 2406185, 99
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | --------------------------------------------------
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | 
[2025-05-27 12:47:23] 2025-05-27 09:00:50,796 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-05-27 12:47:23] 2025-05-27 09:00:50,909 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,910 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 12:47:23] 2025-05-27 09:00:50,912 | INFO     | job 6665933863 has completed (purged errors)
[2025-05-27 12:47:23] 2025-05-27 09:00:50,912 | INFO     | overall cleanup function is called
[2025-05-27 12:47:23] 2025-05-27 09:00:51,922 | INFO     | --- collectZombieJob: --- 10, [18591]
[2025-05-27 12:47:23] 2025-05-27 09:00:51,922 | INFO     | zombie collector waiting for pid 18591
[2025-05-27 12:47:23] 2025-05-27 09:00:51,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 12:47:23] 2025-05-27 09:00:51,922 | INFO     | collected zombie processes
[2025-05-27 12:47:23] 2025-05-27 09:00:51,922 | INFO     | will attempt to kill all subprocesses of pid=18591
[2025-05-27 12:47:23] 2025-05-27 09:00:52,027 | INFO     | process IDs to be killed: [18591] (in reverse order)
[2025-05-27 12:47:23] 2025-05-27 09:00:52,276 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 12:47:23] 2025-05-27 09:00:52,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 12:47:23] 2025-05-27 09:00:52,280 | INFO     | did not find any defunct processes belonging to 18591
[2025-05-27 12:47:23] 2025-05-27 09:00:52,283 | INFO     | did not find any defunct processes belonging to 18591
[2025-05-27 12:47:23] 2025-05-27 09:00:52,283 | INFO     | ready for new job
[2025-05-27 12:47:23] 2025-05-27 09:00:52,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 12:47:23] 2025-05-27 09:00:52,285 | INFO     | **************************************
[2025-05-27 12:47:23] 2025-05-27 09:00:52,285 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 12:47:23] 2025-05-27 09:00:52,285 | INFO     | **************************************
[2025-05-27 12:47:23] 2025-05-27 09:00:52,285 | INFO     | 
[2025-05-27 12:47:23] 2025-05-27 09:00:52,286 | INFO     | pilot is running in a VM
[2025-05-27 12:47:23] 2025-05-27 09:00:52,286 | INFO     | architecture information:
[2025-05-27 12:47:23] 2025-05-27 09:00:52,294 | INFO     | executing command: cat /etc/os-release
[2025-05-27 12:47:23] 2025-05-27 09:00:52,384 | INFO     | cat /etc/os-release:
[2025-05-27 12:47:23] NAME="CentOS Linux"
[2025-05-27 12:47:23] VERSION="7 (Core)"
[2025-05-27 12:47:23] ID="centos"
[2025-05-27 12:47:23] ID_LIKE="rhel fedora"
[2025-05-27 12:47:23] VERSION_ID="7"
[2025-05-27 12:47:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 12:47:23] ANSI_COLOR="0;31"
[2025-05-27 12:47:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 12:47:23] HOME_URL="https://www.centos.org/"
[2025-05-27 12:47:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 12:47:23] 
[2025-05-27 12:47:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 12:47:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 12:47:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 12:47:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 12:47:23] 
[2025-05-27 12:47:23] 2025-05-27 09:00:52,384 | INFO     | **************************************
[2025-05-27 12:47:23] 2025-05-27 09:00:52,888 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-05-27 12:47:23] 2025-05-27 09:00:53,047 | INFO     | sufficient remaining disk space (494313406464 B)
[2025-05-27 12:47:23] 2025-05-27 09:00:53,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 12:47:23] 2025-05-27 09:00:53,048 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 12:47:23] 2025-05-27 09:00:53,048 | INFO     | update_server=False
[2025-05-27 12:47:23] 2025-05-27 09:00:53,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 12:47:23] 2025-05-27 09:00:53,053 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 12:47:23] 2025-05-27 09:00:53,053 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 12:47:23] 2025-05-27 09:00:53,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 12:47:23] 2025-05-27 09:00:53,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 12:47:23] 2025-05-27 09:00:53,095 | INFO     | all data control threads have been joined
[2025-05-27 12:47:23] 2025-05-27 09:00:53,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 12:47:23] 2025-05-27 09:00:53,308 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-27 12:47:23] 2025-05-27 09:00:53,308 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-27 12:47:23] 2025-05-27 09:00:53,308 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 12:47:23] 2025-05-27 09:00:53,308 | INFO     | will abort loop
[2025-05-27 12:47:23] 2025-05-27 09:00:53,455 | INFO     | all payload control threads have been joined
[2025-05-27 12:47:23] 2025-05-27 09:00:54,054 | INFO     | [job] retrieve thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,070 | INFO     | [job] validate thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,101 | INFO     | [data] control thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,314 | INFO     | [job] job monitor thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,329 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,417 | INFO     | [data] copytool_in thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,450 | INFO     | all job control threads have been joined
[2025-05-27 12:47:23] 2025-05-27 09:00:54,461 | INFO     | [payload] control thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,559 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,628 | INFO     | [payload] validate_post thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:54,632 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:55,120 | INFO     | [data] copytool_out thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:55,274 | INFO     | [payload] failed_post thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:55,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:55,456 | INFO     | [job] control thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:55,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 12:47:23] 2025-05-27 09:00:55,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 12:47:23] 2025-05-27 09:00:56,814 | INFO     | [job] queue monitor thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:00:59,470 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 12:47:23] 2025-05-27 09:01:01,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055607310144)>', '<ExcThread(monitor, started 140055167354624)>']
[2025-05-27 12:47:23] 2025-05-27 09:01:02,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 12:47:23] 2025-05-27 09:01:02,106 | INFO     | [monitor] control thread has ended
[2025-05-27 12:47:23] 2025-05-27 09:01:06,365 | INFO     | all workflow threads have been joined
[2025-05-27 12:47:23] 2025-05-27 09:01:06,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 12:47:23] 2025-05-27 09:01:06,365 | INFO     | traces error code: 0
[2025-05-27 12:47:23] 2025-05-27 09:01:06,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 12:47:23] 2025-05-27 09:01:06,581 [wrapper] ==== pilot stdout END ====
[2025-05-27 12:47:23] 2025-05-27 09:01:06,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 12:47:23] 2025-05-27 09:01:06,655 [wrapper] pilotpid: 11989
[2025-05-27 12:47:23] 2025-05-27 09:01:06,749 [wrapper] Pilot exit status: 0
[2025-05-27 12:47:23] 2025-05-27 09:01:07,163 [wrapper] pandaids: 6665933863
[2025-05-27 12:47:23] 2025-05-27 09:01:07,989 [wrapper] cleanup supervisor_pilot 19144 11990
[2025-05-27 12:47:23] 2025-05-27 09:01:08,059 [wrapper] Test setup, not cleaning
[2025-05-27 12:47:23] 2025-05-27 09:01:08,122 [wrapper] apfmon messages muted
[2025-05-27 12:47:23] 2025-05-27 09:01:08,182 [wrapper] ==== wrapper stdout END ====
[2025-05-27 12:47:23] 2025-05-27 09:01:08,283 [wrapper] ==== wrapper stderr END ====
[2025-05-27 12:47:23]  *** Error codes and diagnostics ***
[2025-05-27 12:47:23]     "exeErrorCode": 0,
[2025-05-27 12:47:23]     "exeErrorDiag": "",
[2025-05-27 12:47:23]     "pilotErrorCode": 0,
[2025-05-27 12:47:23]     "pilotErrorDiag": "",
[2025-05-27 12:47:23]  *** Listing of results directory ***
[2025-05-27 12:47:23] total 418352
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc    495897 May 26 13:13 pilot3.tar.gz
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc      5111 May 26 13:31 queuedata.json
[2025-05-27 12:47:23] -rwx------. 1 boinc boinc     37140 May 26 13:33 runpilot2-wrapper.sh
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc       100 May 27 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 12:47:23] -rwxr-xr-x. 1 boinc boinc      7986 May 27 05:35 run_atlas
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc       105 May 27 05:35 job.xml
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc 223598956 May 27 05:35 EVNT.44871834._001990.pool.root.1
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc     15093 May 27 05:35 start_atlas.sh
[2025-05-27 12:47:23] drwxrwx--x. 2 boinc boinc        68 May 27 05:35 shared
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc    508878 May 27 05:35 input.tar.gz
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc      6372 May 27 05:35 init_data.xml
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc         0 May 27 05:35 boinc_lockfile
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc      2559 May 27 05:35 pandaJob.out
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc    990394 May 27 05:38 agis_schedconf.cvmfs.json
[2025-05-27 12:47:23] drwx------. 4 boinc boinc      4096 May 27 05:38 pilot3
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc 196827950 May 27 10:59 HITS.44871837._049971.pool.root.1
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc       531 May 27 10:59 boinc_task_state.xml
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc      1027 May 27 10:59 memory_monitor_summary.json
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc   1603667 May 27 10:59 agis_ddmendpoints.agis.ALL.json
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc    428874 May 27 10:59 log.44871837._049971.job.log.tgz.1
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc        95 May 27 11:00 pilot_heartbeat.json
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc      7688 May 27 11:00 heartbeat.json
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc      4726 May 27 11:01 pilotlog.txt
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc   1638760 May 27 11:01 log.44871837._049971.job.log.1
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc       357 May 27 11:01 output.list
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc       620 May 27 11:01 runtime_log
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc   2088960 May 27 11:01 result.tar.gz
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc      8673 May 27 11:01 runtime_log.err
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc       656 May 27 11:01 gq9KDmtFld7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSdWKDmz5HIjn.diag
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc      8192 May 27 12:47 boinc_mmap_file
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc        28 May 27 12:47 wrapper_checkpoint.txt
[2025-05-27 12:47:23] -rw-r--r--. 1 boinc boinc     20778 May 27 12:47 stderr.txt
[2025-05-27 12:47:23] HITS file was successfully produced:
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc 196827950 May 27 10:59 shared/HITS.pool.root.1
[2025-05-27 12:47:23]  *** Contents of shared directory: ***
[2025-05-27 12:47:23] total 413132
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc 223598956 May 27 05:35 ATLAS.root_0
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc     15093 May 27 05:35 start_atlas.sh
[2025-05-27 12:47:23] -rw-r--r--. 2 boinc boinc    508878 May 27 05:35 input.tar.gz
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc 196827950 May 27 10:59 HITS.pool.root.1
[2025-05-27 12:47:23] -rw-------. 1 boinc boinc   2088960 May 27 11:01 result.tar.gz
12:47:25 (6968): run_atlas exited; CPU time 71375.591277
12:47:25 (6968): called boinc_finish(0)

</stderr_txt>
]]>

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