Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-27 07:19:01 (6752): Detected: vboxwrapper 26206
2025-05-27 07:19:01 (6752): Detected: BOINC client v7.16.20
2025-05-27 07:19:02 (6752): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-05-27 07:19:02 (6752): Successfully copied 'init_data.xml' to the shared directory.
2025-05-27 07:19:03 (6752): Create VM. (boinc_42002c13cd0feecf, slot#2)
2025-05-27 07:19:03 (6752): Setting Memory Size for VM. (4800MB)
2025-05-27 07:19:03 (6752): Setting CPU Count for VM. (8)
2025-05-27 07:19:04 (6752): Setting Chipset Options for VM.
2025-05-27 07:19:04 (6752): Setting Graphics Controller Options for VM.
2025-05-27 07:19:04 (6752): Setting Boot Options for VM.
2025-05-27 07:19:04 (6752): Setting Network Configuration for NAT.
2025-05-27 07:19:05 (6752): Enabling VM Network Access.
2025-05-27 07:19:05 (6752): Disabling USB Support for VM.
2025-05-27 07:19:05 (6752): Disabling COM Port Support for VM.
2025-05-27 07:19:06 (6752): Disabling LPT Port Support for VM.
2025-05-27 07:19:06 (6752): Disabling Audio Support for VM.
2025-05-27 07:19:06 (6752): Disabling Clipboard Support for VM.
2025-05-27 07:19:06 (6752): Disabling Drag and Drop Support for VM.
2025-05-27 07:19:07 (6752): Adding storage controller(s) to VM.
2025-05-27 07:19:07 (6752): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-27 07:19:08 (6752): Adding VirtualBox Guest Additions to VM.
2025-05-27 07:19:08 (6752): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-27 07:19:08 (6752): forwarding host port 57581 to guest port 80
2025-05-27 07:19:09 (6752): Enabling remote desktop for VM.
2025-05-27 07:19:09 (6752): Required extension pack not installed, remote desktop not enabled.
2025-05-27 07:19:09 (6752): Enabling shared directory for VM.
2025-05-27 07:19:10 (6752): Starting VM using VBoxManage interface. (boinc_42002c13cd0feecf, slot#2)
2025-05-27 07:19:13 (6752): Successfully started VM. (PID = '10052')
2025-05-27 07:19:13 (6752): Reporting VM Process ID to BOINC.
2025-05-27 07:19:13 (6752): Guest Log: BIOS: VirtualBox 6.0.14
2025-05-27 07:19:13 (6752): Guest Log: CPUID EDX: 0x178bfbff
2025-05-27 07:19:13 (6752): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-27 07:19:13 (6752): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-27 07:19:13 (6752): Detected: Web Application Enabled (http://localhost:57581)
2025-05-27 07:19:13 (6752): Preference change detected
2025-05-27 07:19:13 (6752): Setting CPU throttle for VM. (80%)
2025-05-27 07:19:13 (6752): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-27 07:19:15 (6752): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-27 07:19:15 (6752): Guest Log: BIOS: Booting from Hard Disk...
2025-05-27 07:19:18 (6752): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-27 07:19:18 (6752): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-27 07:19:18 (6752): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-27 07:19:23 (6752): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-27 07:19:23 (6752): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-27 07:19:28 (6752): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000127 main     Log opened 2025-05-27T07:19:27.207063000Z
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000197 main     OS Product: Linux
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000224 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000245 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000266 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000266 main     Process ID: 1364
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000267 main     Package type: LINUX_64BITS_GENERIC
2025-05-27 07:19:28 (6752): Guest Log: 00:00:00.000902 main     5.2.32 r132073 started. Verbose level = 0
2025-05-27 07:19:28 (6752): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-27 07:19:28 (6752): Guest Log: [INFO] Mounting shared directory
2025-05-27 07:19:28 (6752): Guest Log: [INFO] Checking for init_data.xml
2025-05-27 07:19:32 (6752): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-27 07:19:32 (6752): Guest Log: [INFO] Detected branch: prod
2025-05-27 07:19:32 (6752): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-27 07:19:32 (6752): Guest Log: Copying input files
2025-05-27 07:19:33 (6752): Guest Log: Copied input files into RunAtlas.
2025-05-27 07:19:33 (6752): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-27 07:19:33 (6752): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-27 07:19:33 (6752): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-27 07:19:33 (6752): Guest Log: Further information can be found at the LHC@home message board.
2025-05-27 07:19:38 (6752): Guest Log: 00:00:10.175230 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 939 856 000ns (GuestNow=1 748 323 178 269 636 000 ns GuestLast=1 748 330 367 209 492 000 ns fSetTimeLastLoop=true )
2025-05-27 07:19:40 (6752): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-27 07:19:40 (6752): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-27 07:19:40 (6752): Guest Log: 2.6.3.0 1641 0 30152 146469 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-27 07:19:41 (6752): Guest Log: copied the webapp to /var/www
2025-05-27 07:19:41 (6752): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-27 07:19:41 (6752): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-27 07:19:41 (6752): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-27 07:19:41 (6752): Guest Log:  *** Starting ATLAS job. (PandaID=6665843015 taskID=44871837) ***
2025-05-27 08:59:17 (6752): Status Report: Elapsed Time: '6000.000000'
2025-05-27 08:59:17 (6752): Status Report: CPU Time: '35958.359375'
2025-05-27 09:31:46 (6752): Guest Log:  *** Job finished ***
2025-05-27 09:31:46 (6752): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:35,423 | INFO     | [payload] control thread has finished
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:35,742 | INFO     | [payload] run_realtimelog thread has finished
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:39,275 | INFO     | [data] queue_monitor thread has finished
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:39,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556377777984)>', '<ExcThread(monitor, started 140555321325312)>']
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:40,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:40,271 | INFO     | [monitor] control thread has ended
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:44,899 | INFO     | all workflow threads have been joined
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:44,899 | INFO     | end of generic workflow (traces error code: 0)
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:44,900 | INFO     | traces error code: 0
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:44,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,012 [wrapper] ==== pilot stdout END ====
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,016 [wrapper] ==== wrapper stdout RESUME ====
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,020 [wrapper] pilotpid: 5985
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,023 [wrapper] Pilot exit status: 0
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,080 [wrapper] pandaids: 6665843015
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,107 [wrapper] cleanup supervisor_pilot  3778 5986
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,111 [wrapper] Test setup, not cleaning
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,115 [wrapper] apfmon messages muted
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,119 [wrapper] ==== wrapper stdout END ====
2025-05-27 09:31:46 (6752): Guest Log: 2025-05-27 07:31:45,123 [wrapper] ==== wrapper stderr END ====
2025-05-27 09:31:46 (6752): Guest Log:  *** Error codes and diagnostics ***
2025-05-27 09:31:46 (6752): Guest Log:     "exeErrorCode": 0,
2025-05-27 09:31:46 (6752): Guest Log:     "exeErrorDiag": "",
2025-05-27 09:31:46 (6752): Guest Log:     "pilotErrorCode": 0,
2025-05-27 09:31:46 (6752): Guest Log:     "pilotErrorDiag": "",
2025-05-27 09:31:46 (6752): Guest Log:  *** Listing of results directory ***
2025-05-27 09:31:46 (6752): Guest Log: total 198464
2025-05-27 09:31:46 (6752): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 26 07:32 pilot3.tar.gz
2025-05-27 09:31:46 (6752): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 07:53 queuedata.json
2025-05-27 09:31:46 (6752): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 07:53 runpilot2-wrapper.sh
2025-05-27 09:31:46 (6752): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 27 05:19 start_atlas.sh
2025-05-27 09:31:46 (6752): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 May 27 05:19 input.tar.gz
2025-05-27 09:31:46 (6752): Guest Log: -rwxr-xr-x. 1 atlas atlas      9079 May 27 05:19 init_data.xml
2025-05-27 09:31:46 (6752): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 27 05:19 EVNT.44871834._001900.pool.root.1 -> /data/./ATLAS.root_0
2025-05-27 09:31:46 (6752): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 27 05:19 pandaJob.out
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas    990410 May 27 05:20 agis_schedconf.cvmfs.json
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas   1603667 May 27 05:20 agis_ddmendpoints.agis.ALL.json
2025-05-27 09:31:46 (6752): Guest Log: drwx------. 4 atlas atlas      4096 May 27 05:20 pilot3
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas 197509767 May 27 07:30 HITS.44871837._047658.pool.root.1
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas        95 May 27 07:31 pilot_heartbeat.json
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas      1025 May 27 07:31 memory_monitor_summary.json
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas    332696 May 27 07:31 log.44871837._047658.job.log.tgz.1
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas      7707 May 27 07:31 heartbeat.json
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas      4413 May 27 07:31 pilotlog.txt
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas    638351 May 27 07:31 log.44871837._047658.job.log.1
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas       357 May 27 07:31 output.list
2025-05-27 09:31:46 (6752): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 27 07:31 runtime_log
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas    993280 May 27 07:31 result.tar.gz
2025-05-27 09:31:46 (6752): Guest Log: -rw-r--r--. 1 atlas atlas      8631 May 27 07:31 runtime_log.err
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas       665 May 27 07:31 lJfNDmJphd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmFpPKDmtdbyvn.diag
2025-05-27 09:31:46 (6752): Guest Log: Looking for outputfile HITS.44871837._047658.pool.root.1
2025-05-27 09:31:46 (6752): Guest Log: HITS file was successfully produced
2025-05-27 09:31:46 (6752): Guest Log: -rw-------. 1 atlas atlas 197509767 May 27 07:30 /home/atlas/RunAtlas/HITS.44871837._047658.pool.root.1
2025-05-27 09:31:46 (6752): Guest Log: Successfully finished the ATLAS job!
2025-05-27 09:31:46 (6752): Guest Log: Copying the results back to the shared directory!
2025-05-27 09:31:46 (6752): Guest Log:  *** Contents of shared directory: ***
2025-05-27 09:31:46 (6752): Guest Log: total 413832
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root 224712253 May 27 05:19 ATLAS.root_0
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root 197509767 May 27 07:31 HITS.pool.root.1
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root      9079 May 27 05:19 init_data.xml
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root    508882 May 26 13:54 input.tar.gz
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root    993280 May 27  2025 result.tar.gz
2025-05-27 09:31:46 (6752): Guest Log: -rwxrwxrwx. 1 root root     15093 May 26 13:54 start_atlas.sh
2025-05-27 09:31:46 (6752): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-27 09:31:46 (6752): VM Completion File Detected.
2025-05-27 09:31:46 (6752): Powering off VM.
2025-05-27 09:31:47 (6752): Successfully stopped VM.
2025-05-27 09:31:47 (6752): Deregistering VM. (boinc_42002c13cd0feecf, slot#2)
2025-05-27 09:31:47 (6752): Removing network bandwidth throttle group from VM.
2025-05-27 09:31:47 (6752): Removing VM from VirtualBox.
09:31:52 (6752): called boinc_finish(0)

</stderr_txt>
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