Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-26 17:05:44 (5924): Detected: vboxwrapper 26206
2025-05-26 17:05:44 (5924): Detected: BOINC client v8.0.2
2025-05-26 17:05:45 (5924): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2025-05-26 17:05:46 (5924): Successfully copied 'init_data.xml' to the shared directory.
2025-05-26 17:05:46 (5924): Create VM. (boinc_98c8a4304972b352, slot#2)
2025-05-26 17:05:47 (5924): Setting Memory Size for VM. (4400MB)
2025-05-26 17:05:47 (5924): Setting CPU Count for VM. (4)
2025-05-26 17:05:47 (5924): Setting Chipset Options for VM.
2025-05-26 17:05:48 (5924): Setting Graphics Controller Options for VM.
2025-05-26 17:05:48 (5924): Setting Boot Options for VM.
2025-05-26 17:05:48 (5924): Setting Network Configuration for NAT.
2025-05-26 17:05:49 (5924): Enabling VM Network Access.
2025-05-26 17:05:49 (5924): Disabling USB Support for VM.
2025-05-26 17:05:49 (5924): Disabling COM Port Support for VM.
2025-05-26 17:05:50 (5924): Disabling LPT Port Support for VM.
2025-05-26 17:05:50 (5924): Disabling Audio Support for VM.
2025-05-26 17:05:51 (5924): Disabling Clipboard Support for VM.
2025-05-26 17:05:51 (5924): Disabling Drag and Drop Support for VM.
2025-05-26 17:05:51 (5924): Adding storage controller(s) to VM.
2025-05-26 17:05:52 (5924): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-26 17:05:56 (5924): Adding VirtualBox Guest Additions to VM.
2025-05-26 17:05:56 (5924): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-26 17:05:57 (5924): forwarding host port 49352 to guest port 80
2025-05-26 17:05:57 (5924): Enabling remote desktop for VM.
2025-05-26 17:05:57 (5924): Required extension pack not installed, remote desktop not enabled.
2025-05-26 17:05:57 (5924): Enabling shared directory for VM.
2025-05-26 17:05:58 (5924): Starting VM using VBoxManage interface. (boinc_98c8a4304972b352, slot#2)
2025-05-26 17:06:09 (5924): Successfully started VM. (PID = '14332')
2025-05-26 17:06:09 (5924): Reporting VM Process ID to BOINC.
2025-05-26 17:06:09 (5924): Guest Log: BIOS: VirtualBox 7.0.18
2025-05-26 17:06:09 (5924): Guest Log: CPUID EDX: 0x178bfbff
2025-05-26 17:06:09 (5924): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-26 17:06:09 (5924): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-26 17:06:09 (5924): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-26 17:06:09 (5924): Detected: Web Application Enabled (http://localhost:49352)
2025-05-26 17:06:09 (5924): Preference change detected
2025-05-26 17:06:09 (5924): Setting CPU throttle for VM. (100%)
2025-05-26 17:06:09 (5924): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-26 17:06:11 (5924): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-26 17:06:11 (5924): Guest Log: BIOS: Booting from Hard Disk...
2025-05-26 17:06:14 (5924): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-26 17:06:14 (5924): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-26 17:06:14 (5924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-26 17:06:24 (5924): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-26 17:06:24 (5924): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-26 17:06:41 (5924): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.000358 main     Log opened 2025-05-26T17:06:39.920511000Z
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.000729 main     OS Product: Linux
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.000835 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.000920 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.001004 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.001007 main     Process ID: 1304
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.001009 main     Package type: LINUX_64BITS_GENERIC
2025-05-26 17:06:41 (5924): Guest Log: 00:00:00.004365 main     5.2.32 r132073 started. Verbose level = 0
2025-05-26 17:06:41 (5924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-26 17:06:41 (5924): Guest Log: [INFO] Mounting shared directory
2025-05-26 17:06:41 (5924): Guest Log: [INFO] Checking for init_data.xml
2025-05-26 17:06:46 (5924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-26 17:06:46 (5924): Guest Log: [INFO] Detected branch: prod
2025-05-26 17:06:46 (5924): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-26 17:06:46 (5924): Guest Log: Copying input files
2025-05-26 17:06:50 (5924): Guest Log: Copied input files into RunAtlas.
2025-05-26 17:06:50 (5924): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-26 17:06:50 (5924): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-26 17:06:50 (5924): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-26 17:06:50 (5924): Guest Log: Further information can be found at the LHC@home message board.
2025-05-26 17:06:51 (5924): Guest Log: 00:00:10.013043 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 938 006 000ns (GuestNow=1 748 293 610 869 035 000 ns GuestLast=1 748 279 199 931 029 000 ns fSetTimeLastLoop=true )
2025-05-26 17:07:02 (5924): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-26 17:07:02 (5924): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-26 17:07:02 (5924): Guest Log: 2.6.3.0 1581 0 32152 146455 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-26 17:07:04 (5924): Guest Log: copied the webapp to /var/www
2025-05-26 17:07:04 (5924): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-26 17:07:04 (5924): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-26 17:07:04 (5924): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-26 17:07:05 (5924): Guest Log:  *** Starting ATLAS job. (PandaID=6665756731 taskID=44871837) ***
2025-05-26 18:50:09 (5924): Status Report: Elapsed Time: '6000.966661'
2025-05-26 18:50:09 (5924): Status Report: CPU Time: '21117.500000'
2025-05-26 20:33:46 (5924): Status Report: Elapsed Time: '12003.121752'
2025-05-26 20:33:47 (5924): Status Report: CPU Time: '45772.718750'
2025-05-26 22:18:30 (5924): Status Report: Elapsed Time: '18003.263311'
2025-05-26 22:18:30 (5924): Status Report: CPU Time: '70678.765625'
2025-05-27 00:02:35 (5924): Status Report: Elapsed Time: '24004.049475'
2025-05-27 00:02:35 (5924): Status Report: CPU Time: '95403.531250'
2025-05-27 01:46:48 (5924): Status Report: Elapsed Time: '30011.359808'
2025-05-27 01:46:57 (5924): Status Report: CPU Time: '120063.468750'
2025-05-27 03:30:23 (5924): Status Report: Elapsed Time: '36011.937017'
2025-05-27 03:30:32 (5924): Status Report: CPU Time: '144742.859375'
2025-05-27 05:15:21 (5924): Status Report: Elapsed Time: '42012.365271'
2025-05-27 05:15:21 (5924): Status Report: CPU Time: '169694.515625'
2025-05-27 06:31:30 (5924): Guest Log:  *** Job finished ***
2025-05-27 06:31:30 (5924): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:18,067 | INFO     | [job] control thread has finished
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:18,231 | INFO     | [data] copytool_out thread has finished
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:21,817 | INFO     | [data] queue_monitor thread has finished
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:23,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868575696704)>', '<ExcThread(monitor, started 139868118165248)>']
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:23,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:23,610 | INFO     | [monitor] control thread has ended
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,386 | INFO     | all workflow threads have been joined
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,386 | INFO     | end of generic workflow (traces error code: 0)
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,387 | INFO     | traces error code: 0
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,660 [wrapper] ==== pilot stdout END ====
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,678 [wrapper] ==== wrapper stdout RESUME ====
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,695 [wrapper] pilotpid: 5899
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,713 [wrapper] Pilot exit status: 0
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,798 [wrapper] pandaids: 6665756731
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,924 [wrapper] cleanup supervisor_pilot 32438 5900
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,939 [wrapper] Test setup, not cleaning
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,956 [wrapper] apfmon messages muted
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,974 [wrapper] ==== wrapper stdout END ====
2025-05-27 06:31:30 (5924): Guest Log: 2025-05-27 10:31:28,990 [wrapper] ==== wrapper stderr END ====
2025-05-27 06:31:30 (5924): Guest Log:  *** Error codes and diagnostics ***
2025-05-27 06:31:30 (5924): Guest Log:     "exeErrorCode": 0,
2025-05-27 06:31:30 (5924): Guest Log:     "exeErrorDiag": "",
2025-05-27 06:31:30 (5924): Guest Log:     "pilotErrorCode": 0,
2025-05-27 06:31:30 (5924): Guest Log:     "pilotErrorDiag": "",
2025-05-27 06:31:30 (5924): Guest Log:  *** Listing of results directory ***
2025-05-27 06:31:30 (5924): Guest Log: total 202288
2025-05-27 06:31:30 (5924): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 26 06:04 pilot3.tar.gz
2025-05-27 06:31:30 (5924): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 06:09 queuedata.json
2025-05-27 06:31:30 (5924): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 06:11 runpilot2-wrapper.sh
2025-05-27 06:31:30 (5924): Guest Log: -rwxr-xr-x. 1 atlas atlas      6382 May 26 21:06 init_data.xml
2025-05-27 06:31:30 (5924): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 May 26 21:06 input.tar.gz
2025-05-27 06:31:30 (5924): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 26 21:06 start_atlas.sh
2025-05-27 06:31:30 (5924): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 26 21:06 EVNT.44871834._001860.pool.root.1 -> /data/./ATLAS.root_0
2025-05-27 06:31:30 (5924): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 26 21:07 pandaJob.out
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas    990402 May 26 21:08 agis_schedconf.cvmfs.json
2025-05-27 06:31:30 (5924): Guest Log: drwx------. 4 atlas atlas      4096 May 26 21:08 pilot3
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas 194580045 May 27 10:29 HITS.44871837._046607.pool.root.1
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas        95 May 27 10:30 pilot_heartbeat.json
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas      1029 May 27 10:30 memory_monitor_summary.json
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas   1603667 May 27 10:30 agis_ddmendpoints.agis.ALL.json
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas    592524 May 27 10:30 log.44871837._046607.job.log.tgz.1
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas      7728 May 27 10:31 heartbeat.json
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas      4536 May 27 10:31 pilotlog.txt
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas   3805202 May 27 10:31 log.44871837._046607.job.log.1
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas       357 May 27 10:31 output.list
2025-05-27 06:31:30 (5924): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 27 10:31 runtime_log
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas   4413440 May 27 10:31 result.tar.gz
2025-05-27 06:31:30 (5924): Guest Log: -rw-r--r--. 1 atlas atlas      8587 May 27 10:31 runtime_log.err
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas       658 May 27 10:31 N9fLDmpEgd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo5VKDmYJoXKm.diag
2025-05-27 06:31:30 (5924): Guest Log: Looking for outputfile HITS.44871837._046607.pool.root.1
2025-05-27 06:31:30 (5924): Guest Log: HITS file was successfully produced
2025-05-27 06:31:30 (5924): Guest Log: -rw-------. 1 atlas atlas 194580045 May 27 10:29 /home/atlas/RunAtlas/HITS.44871837._046607.pool.root.1
2025-05-27 06:31:32 (5924): Guest Log: Successfully finished the ATLAS job!
2025-05-27 06:31:32 (5924): Guest Log: Copying the results back to the shared directory!
2025-05-27 06:31:32 (5924): Guest Log:  *** Contents of shared directory: ***
2025-05-27 06:31:32 (5924): Guest Log: total 413892
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root 224290169 May 26 21:05 ATLAS.root_0
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root 194580045 May 27 10:31 HITS.pool.root.1
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root      6382 May 26 21:05 init_data.xml
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root    508876 May 26 12:15 input.tar.gz
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root   4413440 May 27 10:31 result.tar.gz
2025-05-27 06:31:32 (5924): Guest Log: -rwxrwxrwx. 1 root root     15093 May 26 12:15 start_atlas.sh
2025-05-27 06:31:32 (5924): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-27 06:31:32 (5924): VM Completion File Detected.
2025-05-27 06:31:32 (5924): Powering off VM.
2025-05-27 06:31:34 (5924): Successfully stopped VM.
2025-05-27 06:31:34 (5924): Deregistering VM. (boinc_98c8a4304972b352, slot#2)
2025-05-27 06:31:34 (5924): Removing network bandwidth throttle group from VM.
2025-05-27 06:31:34 (5924): Removing VM from VirtualBox.
06:31:39 (5924): called boinc_finish(0)

</stderr_txt>
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