Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:35 (32040): wrapper (7.7.26015): starting
20:51:35 (32040): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 20:51:35] Arguments: --nthreads 8
[2025-05-26 20:51:35] Threads: 8
[2025-05-26 20:51:35] Checking for CVMFS
[2025-05-26 20:51:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 20:51:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 20:51:35] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 20:51:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 20:51:35] 2.11.2.0 18542 20619 90852 146453 3 204 18714870 25165825 2576 130560 0 10786153 99.772 12852412 1862 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 20:51:35] CVMFS is ok
[2025-05-26 20:51:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 20:51:35] Checking for apptainer binary...
[2025-05-26 20:51:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 20:51:35] Running /usr/bin/apptainer --version
[2025-05-26 20:51:35] apptainer version 1.3.2-1.el7
[2025-05-26 20:51:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 20:51:37] cg-vwn438.simple-grid.lan
[2025-05-26 20:51:37] apptainer works
[2025-05-26 20:51:37] Set ATHENA_PROC_NUMBER=8
[2025-05-26 20:51:37] Set ATHENA_CORE_NUMBER=8
[2025-05-26 20:51:37] Starting ATLAS job with PandaID=6665751234
[2025-05-26 20:51:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 02:55:23]  *** The last 200 lines of the pilot log: ***
[2025-05-27 02:55:23] 2025-05-27 00:00:49,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 02:55:23] 2025-05-27 00:00:49,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 02:55:23] 2025-05-27 00:00:49,999 | INFO     | fitting pss+swap vs Time
[2025-05-27 02:55:23] 2025-05-27 00:00:50,000 | INFO     | sum of square deviations: 8456158550.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,003 | INFO     | sum of deviations: 16595743509.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,004 | INFO     | mean x: 1748294755.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,004 | INFO     | mean y: 2486015.4750830564
[2025-05-27 02:55:23] 2025-05-27 00:00:50,004 | INFO     | -- intersect: -3428652504.522274
[2025-05-27 02:55:23] 2025-05-27 00:00:50,004 | INFO     | intersect: -3428652504.522274
[2025-05-27 02:55:23] 2025-05-27 00:00:50,005 | INFO     | chi2: 2.4901911254831703
[2025-05-27 02:55:23] 2025-05-27 00:00:50,005 | INFO     | sum of square deviations: 8041713570.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,008 | INFO     | sum of deviations: 36099286135.99999
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | mean x: 1748294602.5
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | mean y: 2493092.9527027025
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | -- intersect: -7845608752.046468
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | intersect: -7845608752.046468
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | chi2: 1.7177424999130813
[2025-05-27 02:55:23] 2025-05-27 00:00:50,009 | INFO     | current chi2=1.7177424999130813 (change=31.019652173092187 %)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,010 | INFO     | sum of square deviations: 7641036290.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,013 | INFO     | sum of deviations: 35293520361.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,013 | INFO     | mean x: 1748294450.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,014 | INFO     | mean y: 2492786.2577319588
[2025-05-27 02:55:23] 2025-05-27 00:00:50,014 | INFO     | -- intersect: -8072781748.015982
[2025-05-27 02:55:23] 2025-05-27 00:00:50,014 | INFO     | intersect: -8072781748.015982
[2025-05-27 02:55:23] 2025-05-27 00:00:50,014 | INFO     | chi2: 1.7183582447972978
[2025-05-27 02:55:23] 2025-05-27 00:00:50,015 | INFO     | current chi2=1.7183582447972978 (change=-0.035846169274365604 %)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,015 | INFO     | right removable region: 290
[2025-05-27 02:55:23] 2025-05-27 00:00:50,015 | INFO     | sum of square deviations: 8041713570.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,018 | INFO     | sum of deviations: -34958137237.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,019 | INFO     | mean x: 1748294907.5
[2025-05-27 02:55:23] 2025-05-27 00:00:50,019 | INFO     | mean y: 2504861.864864865
[2025-05-27 02:55:23] 2025-05-27 00:00:50,019 | INFO     | -- intersect: 7602518562.319657
[2025-05-27 02:55:23] 2025-05-27 00:00:50,019 | INFO     | intersect: 7602518562.319657
[2025-05-27 02:55:23] 2025-05-27 00:00:50,020 | INFO     | chi2: 0.89996565464099
[2025-05-27 02:55:23] 2025-05-27 00:00:50,020 | INFO     | current chi2=0.89996565464099 (change=63.859575057060326 %)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,020 | INFO     | sum of square deviations: 7641036290.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,023 | INFO     | sum of deviations: -36359720207.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,024 | INFO     | mean x: 1748295060.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,024 | INFO     | mean y: 2505382.3333333335
[2025-05-27 02:55:23] 2025-05-27 00:00:50,024 | INFO     | -- intersect: 8321732880.843261
[2025-05-27 02:55:23] 2025-05-27 00:00:50,024 | INFO     | intersect: 8321732880.843261
[2025-05-27 02:55:23] 2025-05-27 00:00:50,025 | INFO     | chi2: 0.8879028932787008
[2025-05-27 02:55:23] 2025-05-27 00:00:50,025 | INFO     | current chi2=0.8879028932787008 (change=1.3403579681161557 %)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,025 | INFO     | left removable region: 20
[2025-05-27 02:55:23] 2025-05-27 00:00:50,025 | INFO     | sum of square deviations: 6103286527.5
[2025-05-27 02:55:23] 2025-05-27 00:00:50,028 | INFO     | sum of deviations: 2471953630.0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,028 | INFO     | mean x: 1748295029.5
[2025-05-27 02:55:23] 2025-05-27 00:00:50,029 | INFO     | mean y: 2504839.925925926
[2025-05-27 02:55:23] 2025-05-27 00:00:50,029 | INFO     | -- intersect: -705589762.0579201
[2025-05-27 02:55:23] 2025-05-27 00:00:50,029 | INFO     | intersect: -705589762.0579201
[2025-05-27 02:55:23] 2025-05-27 00:00:50,029 | INFO     | chi2: 0.02448171485732937
[2025-05-27 02:55:23] 2025-05-27 00:00:50,029 | INFO     | -- intersect: -705589762.0579201
[2025-05-27 02:55:23] 2025-05-27 00:00:50,030 | INFO     | current memory leak: 0.41 B/s (using 270 data points, chi2=0.02)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,030 | INFO     | ..............................
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . Timing measurements:
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . get job = 0 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . initial setup = 3 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . payload setup = 17 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . stage-in = 0 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . payload execution = 18365 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . stage-out = 7 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | . log creation = 1 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,031 | INFO     | ..............................
[2025-05-27 02:55:23] 2025-05-27 00:00:50,169 | INFO     | 
[2025-05-27 02:55:23] 2025-05-27 00:00:50,169 | INFO     | job summary report
[2025-05-27 02:55:23] 2025-05-27 00:00:50,169 | INFO     | --------------------------------------------------
[2025-05-27 02:55:23] 2025-05-27 00:00:50,169 | INFO     | PanDA job id: 6665751234
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | task id: 44871837
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | errors: (none)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | pilot state: finished 
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | transexitcode: 0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | exeerrorcode: 0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | exeerrordiag: 
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | exitcode: 0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | exitmsg: OK
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | cpuconsumptiontime: 70952 s
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | nevents: 400
[2025-05-27 02:55:23] 2025-05-27 00:00:50,170 | INFO     | neventsw: 0
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | pid: 11961
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | pgrp: 11961
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | corecount: 8
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | event service: False
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 17: 2405496, 23: 2405524, 18386: 2437371, 18395: 2446312, 18397: 2446368, 18491: 2446538}
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | --------------------------------------------------
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | 
[2025-05-27 02:55:23] 2025-05-27 00:00:50,171 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-05-27 02:55:23] 2025-05-27 00:00:50,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,594 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | job 6665751234 has completed (purged errors)
[2025-05-27 02:55:23] 2025-05-27 00:00:50,595 | INFO     | overall cleanup function is called
[2025-05-27 02:55:23] 2025-05-27 00:00:51,604 | INFO     | --- collectZombieJob: --- 10, [11961]
[2025-05-27 02:55:23] 2025-05-27 00:00:51,604 | INFO     | zombie collector waiting for pid 11961
[2025-05-27 02:55:23] 2025-05-27 00:00:51,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 02:55:23] 2025-05-27 00:00:51,604 | INFO     | collected zombie processes
[2025-05-27 02:55:23] 2025-05-27 00:00:51,605 | INFO     | will attempt to kill all subprocesses of pid=11961
[2025-05-27 02:55:23] 2025-05-27 00:00:51,737 | INFO     | process IDs to be killed: [11961] (in reverse order)
[2025-05-27 02:55:23] 2025-05-27 00:00:52,301 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 02:55:23] 2025-05-27 00:00:52,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 02:55:23] 2025-05-27 00:00:52,304 | INFO     | did not find any defunct processes belonging to 11961
[2025-05-27 02:55:23] 2025-05-27 00:00:52,307 | INFO     | did not find any defunct processes belonging to 11961
[2025-05-27 02:55:23] 2025-05-27 00:00:52,307 | INFO     | ready for new job
[2025-05-27 02:55:23] 2025-05-27 00:00:52,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 02:55:23] 2025-05-27 00:00:52,310 | INFO     | **************************************
[2025-05-27 02:55:23] 2025-05-27 00:00:52,310 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 02:55:23] 2025-05-27 00:00:52,310 | INFO     | **************************************
[2025-05-27 02:55:23] 2025-05-27 00:00:52,310 | INFO     | 
[2025-05-27 02:55:23] 2025-05-27 00:00:52,311 | INFO     | pilot is running in a VM
[2025-05-27 02:55:23] 2025-05-27 00:00:52,311 | INFO     | architecture information:
[2025-05-27 02:55:23] 2025-05-27 00:00:52,320 | INFO     | executing command: cat /etc/os-release
[2025-05-27 02:55:23] 2025-05-27 00:00:52,535 | INFO     | cat /etc/os-release:
[2025-05-27 02:55:23] NAME="CentOS Linux"
[2025-05-27 02:55:23] VERSION="7 (Core)"
[2025-05-27 02:55:23] ID="centos"
[2025-05-27 02:55:23] ID_LIKE="rhel fedora"
[2025-05-27 02:55:23] VERSION_ID="7"
[2025-05-27 02:55:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 02:55:23] ANSI_COLOR="0;31"
[2025-05-27 02:55:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 02:55:23] HOME_URL="https://www.centos.org/"
[2025-05-27 02:55:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 02:55:23] 
[2025-05-27 02:55:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 02:55:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 02:55:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 02:55:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 02:55:23] 
[2025-05-27 02:55:23] 2025-05-27 00:00:52,536 | INFO     | **************************************
[2025-05-27 02:55:23] 2025-05-27 00:00:53,039 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-05-27 02:55:23] 2025-05-27 00:00:53,208 | INFO     | sufficient remaining disk space (495411265536 B)
[2025-05-27 02:55:23] 2025-05-27 00:00:53,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 02:55:23] 2025-05-27 00:00:53,208 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 02:55:23] 2025-05-27 00:00:53,209 | INFO     | update_server=False
[2025-05-27 02:55:23] 2025-05-27 00:00:53,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 02:55:23] 2025-05-27 00:00:53,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 02:55:23] 2025-05-27 00:00:53,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 02:55:23] 2025-05-27 00:00:53,567 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-27 02:55:23] 2025-05-27 00:00:53,567 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-27 02:55:23] 2025-05-27 00:00:53,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 02:55:23] 2025-05-27 00:00:53,567 | INFO     | will abort loop
[2025-05-27 02:55:23] 2025-05-27 00:00:53,608 | INFO     | all data control threads have been joined
[2025-05-27 02:55:23] 2025-05-27 00:00:53,795 | INFO     | PID=3625 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-05-27 02:55:23] 2025-05-27 00:00:53,796 | INFO     | .. there are 9 such processes running
[2025-05-27 02:55:23] 2025-05-27 00:00:53,796 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 02:55:23] 2025-05-27 00:00:53,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 02:55:23] 2025-05-27 00:00:53,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 02:55:23] 2025-05-27 00:00:54,215 | INFO     | [job] retrieve thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,334 | INFO     | all job control threads have been joined
[2025-05-27 02:55:23] 2025-05-27 00:00:54,440 | INFO     | [payload] validate_post thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,573 | INFO     | [job] job monitor thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,588 | INFO     | all payload control threads have been joined
[2025-05-27 02:55:23] 2025-05-27 00:00:54,614 | INFO     | [data] control thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,877 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,953 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:54,996 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,131 | INFO     | [job] validate thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 02:55:23] 2025-05-27 00:00:55,224 | INFO     | [data] copytool_out thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,340 | INFO     | [job] control thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,422 | INFO     | [payload] failed_post thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,432 | INFO     | [data] copytool_in thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:55,593 | INFO     | [payload] control thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:56,190 | INFO     | [job] queue monitor thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:57,219 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 02:55:23] 2025-05-27 00:00:58,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437856356160)>', '<ExcThread(monitor, started 140437419443968)>']
[2025-05-27 02:55:23] 2025-05-27 00:00:58,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 02:55:23] 2025-05-27 00:00:58,825 | INFO     | [monitor] control thread has ended
[2025-05-27 02:55:23] 2025-05-27 00:01:03,349 | INFO     | all workflow threads have been joined
[2025-05-27 02:55:23] 2025-05-27 00:01:03,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 02:55:23] 2025-05-27 00:01:03,350 | INFO     | traces error code: 0
[2025-05-27 02:55:23] 2025-05-27 00:01:03,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 02:55:23] 2025-05-27 00:01:03,626 [wrapper] ==== pilot stdout END ====
[2025-05-27 02:55:23] 2025-05-27 00:01:03,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 02:55:23] 2025-05-27 00:01:03,661 [wrapper] pilotpid: 3625
[2025-05-27 02:55:23] 2025-05-27 00:01:03,724 [wrapper] Pilot exit status: 0
[2025-05-27 02:55:23] 2025-05-27 00:01:04,222 [wrapper] pandaids: 6665751234
[2025-05-27 02:55:23] 2025-05-27 00:01:05,561 [wrapper] cleanup supervisor_pilot 22640 3626
[2025-05-27 02:55:23] 2025-05-27 00:01:05,620 [wrapper] Test setup, not cleaning
[2025-05-27 02:55:23] 2025-05-27 00:01:05,623 [wrapper] apfmon messages muted
[2025-05-27 02:55:23] 2025-05-27 00:01:05,636 [wrapper] ==== wrapper stdout END ====
[2025-05-27 02:55:23] 2025-05-27 00:01:05,742 [wrapper] ==== wrapper stderr END ====
[2025-05-27 02:55:23]  *** Error codes and diagnostics ***
[2025-05-27 02:55:23]     "exeErrorCode": 0,
[2025-05-27 02:55:23]     "exeErrorDiag": "",
[2025-05-27 02:55:23]     "pilotErrorCode": 0,
[2025-05-27 02:55:23]     "pilotErrorDiag": "",
[2025-05-27 02:55:23]  *** Listing of results directory ***
[2025-05-27 02:55:23] total 422380
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc    495897 May 26 03:12 pilot3.tar.gz
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc      5111 May 26 03:22 queuedata.json
[2025-05-27 02:55:23] -rwx------. 1 boinc boinc     37140 May 26 03:23 runpilot2-wrapper.sh
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc       100 May 26 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 02:55:23] -rwxr-xr-x. 1 boinc boinc      7986 May 26 20:51 run_atlas
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc       105 May 26 20:51 job.xml
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc      6372 May 26 20:51 init_data.xml
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc 225192788 May 26 20:51 EVNT.44871834._001745.pool.root.1
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc     15093 May 26 20:51 start_atlas.sh
[2025-05-27 02:55:23] drwxrwx--x. 2 boinc boinc        68 May 26 20:51 shared
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc    508879 May 26 20:51 input.tar.gz
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc         0 May 26 20:51 boinc_lockfile
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc      2559 May 26 20:51 pandaJob.out
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc    990410 May 26 20:51 agis_schedconf.cvmfs.json
[2025-05-27 02:55:23] drwx------. 4 boinc boinc      4096 May 26 20:51 pilot3
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc 199485366 May 27 01:57 HITS.44871837._043733.pool.root.1
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc       531 May 27 01:57 boinc_task_state.xml
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc      1021 May 27 01:59 memory_monitor_summary.json
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc   1603667 May 27 01:59 agis_ddmendpoints.agis.ALL.json
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc    414867 May 27 01:59 log.44871837._043733.job.log.tgz.1
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc        95 May 27 02:00 pilot_heartbeat.json
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc      7692 May 27 02:00 heartbeat.json
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc      4993 May 27 02:01 pilotlog.txt
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc   1591778 May 27 02:01 log.44871837._043733.job.log.1
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc       357 May 27 02:01 output.list
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc       620 May 27 02:01 runtime_log
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc   2027520 May 27 02:01 result.tar.gz
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc      8659 May 27 02:01 runtime_log.err
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc       657 May 27 02:01 LNkMDmzjbd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpcVKDm6utL1m.diag
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc      8192 May 27 02:55 boinc_mmap_file
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc        28 May 27 02:55 wrapper_checkpoint.txt
[2025-05-27 02:55:23] -rw-r--r--. 1 boinc boinc     20568 May 27 02:55 stderr.txt
[2025-05-27 02:55:23] HITS file was successfully produced:
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc 199485366 May 27 01:57 shared/HITS.pool.root.1
[2025-05-27 02:55:23]  *** Contents of shared directory: ***
[2025-05-27 02:55:23] total 417224
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc 225192788 May 26 20:51 ATLAS.root_0
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc     15093 May 26 20:51 start_atlas.sh
[2025-05-27 02:55:23] -rw-r--r--. 2 boinc boinc    508879 May 26 20:51 input.tar.gz
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc 199485366 May 27 01:57 HITS.pool.root.1
[2025-05-27 02:55:23] -rw-------. 1 boinc boinc   2027520 May 27 02:01 result.tar.gz
02:55:25 (32040): run_atlas exited; CPU time 71194.975743
02:55:25 (32040): called boinc_finish(0)

</stderr_txt>
]]>

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