Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:11:56 (23797): wrapper (7.7.26015): starting
20:11:56 (23797): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 20:11:56] Arguments: --nthreads 8
[2025-05-26 20:11:56] Threads: 8
[2025-05-26 20:11:56] Checking for CVMFS
[2025-05-26 20:11:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 20:11:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 20:11:57] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 20:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 20:11:57] 2.11.2.0 9859 20610 87940 146452 0 19 24570148 25165824 3842 130560 0 11594878 99.796 13436908 1858 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 20:11:57] CVMFS is ok
[2025-05-26 20:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 20:11:57] Checking for apptainer binary...
[2025-05-26 20:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 20:11:57] Running /usr/bin/apptainer --version
[2025-05-26 20:11:57] apptainer version 1.3.2-1.el7
[2025-05-26 20:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 20:12:09] cg-vwn461.simple-grid.lan
[2025-05-26 20:12:09] apptainer works
[2025-05-26 20:12:09] Set ATHENA_PROC_NUMBER=8
[2025-05-26 20:12:09] Set ATHENA_CORE_NUMBER=8
[2025-05-26 20:12:09] Starting ATLAS job with PandaID=6665752727
[2025-05-26 20:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 01:19:15]  *** The last 200 lines of the pilot log: ***
[2025-05-27 01:19:15] 2025-05-26 23:18:49,856 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 01:19:15] 2025-05-26 23:18:49,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 01:19:15] 2025-05-26 23:18:49,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 01:19:15] 2025-05-26 23:18:49,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 01:19:15] 2025-05-26 23:18:49,862 | INFO     | fitting pss+swap vs Time
[2025-05-27 01:19:15] 2025-05-26 23:18:49,863 | INFO     | sum of square deviations: 7484568240.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,865 | INFO     | sum of deviations: 19553005025.99994
[2025-05-27 01:19:15] 2025-05-26 23:18:49,866 | INFO     | mean x: 1748292603.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,866 | INFO     | mean y: 2493610.560553633
[2025-05-27 01:19:15] 2025-05-26 23:18:49,866 | INFO     | -- intersect: -4564820489.227454
[2025-05-27 01:19:15] 2025-05-26 23:18:49,866 | INFO     | intersect: -4564820489.227454
[2025-05-27 01:19:15] 2025-05-26 23:18:49,867 | INFO     | chi2: 5.693275352116154
[2025-05-27 01:19:15] 2025-05-26 23:18:49,867 | INFO     | sum of square deviations: 7102775035.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,870 | INFO     | sum of deviations: 38662574242.49999
[2025-05-27 01:19:15] 2025-05-26 23:18:49,870 | INFO     | mean x: 1748292450.5
[2025-05-27 01:19:15] 2025-05-26 23:18:49,870 | INFO     | mean y: 2501136.1091549294
[2025-05-27 01:19:15] 2025-05-26 23:18:49,870 | INFO     | -- intersect: -9513988733.270256
[2025-05-27 01:19:15] 2025-05-26 23:18:49,870 | INFO     | intersect: -9513988733.270256
[2025-05-27 01:19:15] 2025-05-26 23:18:49,878 | INFO     | chi2: 4.960221832172055
[2025-05-27 01:19:15] 2025-05-26 23:18:49,878 | INFO     | current chi2=4.960221832172055 (change=12.875778433439514 %)
[2025-05-27 01:19:15] 2025-05-26 23:18:49,878 | INFO     | right removable region: 283
[2025-05-27 01:19:15] 2025-05-26 23:18:49,879 | INFO     | sum of square deviations: 7102775035.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,881 | INFO     | sum of deviations: -77666767700.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | mean x: 1748292755.5
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | mean y: 2532389.8028169014
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | -- intersect: 19119602358.077744
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | intersect: 19119602358.077744
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | chi2: 1.3895376749208421
[2025-05-27 01:19:15] 2025-05-26 23:18:49,882 | INFO     | current chi2=1.3895376749208421 (change=75.59335199896206 %)
[2025-05-27 01:19:15] 2025-05-26 23:18:49,883 | INFO     | sum of square deviations: 6734191380.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,885 | INFO     | sum of deviations: -97923924517.99997
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | mean x: 1748292908.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | mean y: 2540705.2580645164
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | -- intersect: 25424999482.832436
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | intersect: 25424999482.832436
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | chi2: 1.0360022444439663
[2025-05-27 01:19:15] 2025-05-26 23:18:49,886 | INFO     | current chi2=1.0360022444439663 (change=25.442666064956875 %)
[2025-05-27 01:19:15] 2025-05-26 23:18:49,887 | INFO     | sum of square deviations: 6378584712.5
[2025-05-27 01:19:15] 2025-05-26 23:18:49,889 | INFO     | sum of deviations: -90678779265.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,889 | INFO     | mean x: 1748293060.5
[2025-05-27 01:19:15] 2025-05-26 23:18:49,890 | INFO     | mean y: 2537595.02189781
[2025-05-27 01:19:15] 2025-05-26 23:18:49,890 | INFO     | -- intersect: 24856496218.936745
[2025-05-27 01:19:15] 2025-05-26 23:18:49,890 | INFO     | intersect: 24856496218.936745
[2025-05-27 01:19:15] 2025-05-26 23:18:49,890 | INFO     | chi2: 1.0329954711412481
[2025-05-27 01:19:15] 2025-05-26 23:18:49,891 | INFO     | current chi2=1.0329954711412481 (change=0.2902284545080223 %)
[2025-05-27 01:19:15] 2025-05-26 23:18:49,891 | INFO     | left removable region: 30
[2025-05-27 01:19:15] 2025-05-26 23:18:49,891 | INFO     | sum of square deviations: 5021496942.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,893 | INFO     | sum of deviations: -43615224297.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,893 | INFO     | mean x: 1748293335.0
[2025-05-27 01:19:15] 2025-05-26 23:18:49,893 | INFO     | mean y: 2533514.4229249014
[2025-05-27 01:19:15] 2025-05-26 23:18:49,901 | INFO     | -- intersect: 15187687826.715475
[2025-05-27 01:19:15] 2025-05-26 23:18:49,901 | INFO     | intersect: 15187687826.715475
[2025-05-27 01:19:15] 2025-05-26 23:18:49,901 | INFO     | chi2: 0.20075503869507202
[2025-05-27 01:19:15] 2025-05-26 23:18:49,902 | INFO     | -- intersect: 15187687826.715475
[2025-05-27 01:19:15] 2025-05-26 23:18:49,902 | INFO     | current memory leak: -8.69 B/s (using 253 data points, chi2=0.20)
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | ..............................
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . Timing measurements:
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . get job = 0 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . initial setup = 8 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . payload setup = 166 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . stage-in = 0 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . payload execution = 17759 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . stage-out = 6 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | . log creation = 1 s
[2025-05-27 01:19:15] 2025-05-26 23:18:49,903 | INFO     | ..............................
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | 
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | job summary report
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | --------------------------------------------------
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | PanDA job id: 6665752727
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | task id: 44871837
[2025-05-27 01:19:15] 2025-05-26 23:18:50,058 | INFO     | errors: (none)
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | pilot state: finished 
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | transexitcode: 0
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | exeerrorcode: 0
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | exeerrordiag: 
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | exitcode: 0
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | exitmsg: OK
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | cpuconsumptiontime: 67584 s
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | nevents: 400
[2025-05-27 01:19:15] 2025-05-26 23:18:50,059 | INFO     | neventsw: 0
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | pid: 2852
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | pgrp: 2852
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | corecount: 8
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | event service: False
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | sizes: {0: 2405234, 1: 2405234, 12: 2405262, 22: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 65: 2405558, 76: 2405586, 87: 2405642, 91: 2405876, 98: 2406184, 1
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | --------------------------------------------------
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | 
[2025-05-27 01:19:15] 2025-05-26 23:18:50,060 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-05-27 01:19:15] 2025-05-26 23:18:50,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,618 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 01:19:15] 2025-05-26 23:18:50,618 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,618 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 01:19:15] 2025-05-26 23:18:50,618 | INFO     | job 6665752727 has completed (purged errors)
[2025-05-27 01:19:15] 2025-05-26 23:18:50,618 | INFO     | overall cleanup function is called
[2025-05-27 01:19:15] 2025-05-26 23:18:51,628 | INFO     | --- collectZombieJob: --- 10, [2852]
[2025-05-27 01:19:15] 2025-05-26 23:18:51,628 | INFO     | zombie collector waiting for pid 2852
[2025-05-27 01:19:15] 2025-05-26 23:18:51,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 01:19:15] 2025-05-26 23:18:51,628 | INFO     | collected zombie processes
[2025-05-27 01:19:15] 2025-05-26 23:18:51,628 | INFO     | will attempt to kill all subprocesses of pid=2852
[2025-05-27 01:19:15] 2025-05-26 23:18:51,723 | INFO     | process IDs to be killed: [2852] (in reverse order)
[2025-05-27 01:19:15] 2025-05-26 23:18:52,287 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 01:19:15] 2025-05-26 23:18:52,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 01:19:15] 2025-05-26 23:18:52,291 | INFO     | did not find any defunct processes belonging to 2852
[2025-05-27 01:19:15] 2025-05-26 23:18:52,293 | INFO     | did not find any defunct processes belonging to 2852
[2025-05-27 01:19:15] 2025-05-26 23:18:52,293 | INFO     | ready for new job
[2025-05-27 01:19:15] 2025-05-26 23:18:52,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 01:19:15] 2025-05-26 23:18:52,299 | INFO     | **************************************
[2025-05-27 01:19:15] 2025-05-26 23:18:52,299 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 01:19:15] 2025-05-26 23:18:52,300 | INFO     | **************************************
[2025-05-27 01:19:15] 2025-05-26 23:18:52,300 | INFO     | 
[2025-05-27 01:19:15] 2025-05-26 23:18:52,300 | INFO     | pilot is running in a VM
[2025-05-27 01:19:15] 2025-05-26 23:18:52,300 | INFO     | architecture information:
[2025-05-27 01:19:15] 2025-05-26 23:18:52,309 | INFO     | executing command: cat /etc/os-release
[2025-05-27 01:19:15] 2025-05-26 23:18:52,442 | INFO     | cat /etc/os-release:
[2025-05-27 01:19:15] NAME="CentOS Linux"
[2025-05-27 01:19:15] VERSION="7 (Core)"
[2025-05-27 01:19:15] ID="centos"
[2025-05-27 01:19:15] ID_LIKE="rhel fedora"
[2025-05-27 01:19:15] VERSION_ID="7"
[2025-05-27 01:19:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 01:19:15] ANSI_COLOR="0;31"
[2025-05-27 01:19:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 01:19:15] HOME_URL="https://www.centos.org/"
[2025-05-27 01:19:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 01:19:15] 
[2025-05-27 01:19:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 01:19:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 01:19:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 01:19:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 01:19:15] 
[2025-05-27 01:19:15] 2025-05-26 23:18:52,442 | INFO     | **************************************
[2025-05-27 01:19:15] 2025-05-26 23:18:52,946 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-05-27 01:19:15] 2025-05-26 23:18:53,056 | INFO     | sufficient remaining disk space (493232324608 B)
[2025-05-27 01:19:15] 2025-05-26 23:18:53,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 01:19:15] 2025-05-26 23:18:53,057 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 01:19:15] 2025-05-26 23:18:53,057 | INFO     | update_server=False
[2025-05-27 01:19:15] 2025-05-26 23:18:53,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 01:19:15] 2025-05-26 23:18:53,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 01:19:15] 2025-05-26 23:18:53,184 | INFO     | all payload control threads have been joined
[2025-05-27 01:19:15] 2025-05-26 23:18:53,203 | INFO     | all data control threads have been joined
[2025-05-27 01:19:15] 2025-05-26 23:18:53,323 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-27 01:19:15] 2025-05-26 23:18:53,323 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-27 01:19:15] 2025-05-26 23:18:53,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 01:19:15] 2025-05-26 23:18:53,323 | INFO     | will abort loop
[2025-05-27 01:19:15] 2025-05-26 23:18:53,859 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 01:19:15] 2025-05-26 23:18:53,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 01:19:15] 2025-05-26 23:18:53,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 01:19:15] 2025-05-26 23:18:53,861 | INFO     | all job control threads have been joined
[2025-05-27 01:19:15] 2025-05-26 23:18:54,063 | INFO     | [job] retrieve thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 01:19:15] 2025-05-26 23:18:54,136 | INFO     | [job] validate thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,159 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,190 | INFO     | [payload] control thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,209 | INFO     | [data] control thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,328 | INFO     | [job] job monitor thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,716 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:54,867 | INFO     | [job] control thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,021 | INFO     | [payload] validate_post thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,066 | INFO     | [data] copytool_out thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 01:19:15] 2025-05-26 23:18:55,304 | INFO     | [payload] failed_post thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,320 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,532 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:55,532 | INFO     | [data] copytool_in thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:56,085 | INFO     | [job] queue monitor thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:58,085 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 01:19:15] 2025-05-26 23:18:59,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645671647040)>', '<ExcThread(monitor, started 139644989585152)>']
[2025-05-27 01:19:15] 2025-05-26 23:18:59,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 01:19:15] 2025-05-26 23:18:59,895 | INFO     | [monitor] control thread has ended
[2025-05-27 01:19:15] 2025-05-26 23:19:04,106 | INFO     | all workflow threads have been joined
[2025-05-27 01:19:15] 2025-05-26 23:19:04,106 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 01:19:15] 2025-05-26 23:19:04,106 | INFO     | traces error code: 0
[2025-05-27 01:19:15] 2025-05-26 23:19:04,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 01:19:15] 2025-05-26 23:19:04,412 [wrapper] ==== pilot stdout END ====
[2025-05-27 01:19:15] 2025-05-26 23:19:04,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 01:19:15] 2025-05-26 23:19:04,625 [wrapper] pilotpid: 28657
[2025-05-27 01:19:15] 2025-05-26 23:19:04,674 [wrapper] Pilot exit status: 0
[2025-05-27 01:19:15] 2025-05-26 23:19:05,003 [wrapper] pandaids: 6665752727
[2025-05-27 01:19:15] 2025-05-26 23:19:05,863 [wrapper] cleanup supervisor_pilot 32060 28658
[2025-05-27 01:19:15] 2025-05-26 23:19:05,903 [wrapper] Test setup, not cleaning
[2025-05-27 01:19:15] 2025-05-26 23:19:06,016 [wrapper] apfmon messages muted
[2025-05-27 01:19:15] 2025-05-26 23:19:06,111 [wrapper] ==== wrapper stdout END ====
[2025-05-27 01:19:15] 2025-05-26 23:19:06,202 [wrapper] ==== wrapper stderr END ====
[2025-05-27 01:19:15]  *** Error codes and diagnostics ***
[2025-05-27 01:19:15]     "exeErrorCode": 0,
[2025-05-27 01:19:15]     "exeErrorDiag": "",
[2025-05-27 01:19:15]     "pilotErrorCode": 0,
[2025-05-27 01:19:15]     "pilotErrorDiag": "",
[2025-05-27 01:19:15]  *** Listing of results directory ***
[2025-05-27 01:19:15] total 423368
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc    495897 May 26 04:44 pilot3.tar.gz
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc      5111 May 26 05:32 queuedata.json
[2025-05-27 01:19:15] -rwx------. 1 boinc boinc     37140 May 26 05:33 runpilot2-wrapper.sh
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc       100 May 26 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 01:19:15] -rwxr-xr-x. 1 boinc boinc      7986 May 26 20:11 run_atlas
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc       105 May 26 20:11 job.xml
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc    508872 May 26 20:11 input.tar.gz
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc      6373 May 26 20:11 init_data.xml
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc 224310205 May 26 20:11 EVNT.44871834._001791.pool.root.1
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc     15093 May 26 20:11 start_atlas.sh
[2025-05-27 01:19:15] drwxrwx--x. 2 boinc boinc        68 May 26 20:11 shared
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc         0 May 26 20:11 boinc_lockfile
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc      2558 May 26 20:12 pandaJob.out
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc    990410 May 26 20:15 agis_schedconf.cvmfs.json
[2025-05-27 01:19:15] drwx------. 4 boinc boinc      4096 May 26 20:15 pilot3
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc 201503585 May 27 01:16 HITS.44871837._044883.pool.root.1
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc       531 May 27 01:16 boinc_task_state.xml
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc      1030 May 27 01:17 memory_monitor_summary.json
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc   1603667 May 27 01:17 agis_ddmendpoints.agis.ALL.json
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc    406601 May 27 01:17 log.44871837._044883.job.log.tgz.1
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc        95 May 27 01:18 pilot_heartbeat.json
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc      7688 May 27 01:18 heartbeat.json
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc      4603 May 27 01:19 pilotlog.txt
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc   1539923 May 27 01:19 log.44871837._044883.job.log.1
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc       357 May 27 01:19 output.list
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc       620 May 27 01:19 runtime_log
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc   1966080 May 27 01:19 result.tar.gz
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc      8673 May 27 01:19 runtime_log.err
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc       657 May 27 01:19 dLLKDm0ldd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0nVKDmnEZQin.diag
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc      8192 May 27 01:19 boinc_mmap_file
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc        28 May 27 01:19 wrapper_checkpoint.txt
[2025-05-27 01:19:15] -rw-r--r--. 1 boinc boinc     20432 May 27 01:19 stderr.txt
[2025-05-27 01:19:15] HITS file was successfully produced:
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc 201503585 May 27 01:16 shared/HITS.pool.root.1
[2025-05-27 01:19:15]  *** Contents of shared directory: ***
[2025-05-27 01:19:15] total 418276
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc    508872 May 26 20:11 input.tar.gz
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc 224310205 May 26 20:11 ATLAS.root_0
[2025-05-27 01:19:15] -rw-r--r--. 2 boinc boinc     15093 May 26 20:11 start_atlas.sh
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc 201503585 May 27 01:16 HITS.pool.root.1
[2025-05-27 01:19:15] -rw-------. 1 boinc boinc   1966080 May 27 01:19 result.tar.gz
01:19:17 (23797): run_atlas exited; CPU time 67820.520807
01:19:17 (23797): called boinc_finish(0)

</stderr_txt>
]]>

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