Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
14:37:12 (271561): wrapper (7.7.26015): starting
14:37:12 (271561): wrapper: running run_atlas (--nthreads 12)
[2025-05-26 14:37:12] Arguments: --nthreads 12
[2025-05-26 14:37:12] Threads: 12
[2025-05-26 14:37:12] Checking for CVMFS
[2025-05-26 14:37:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 14:37:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 14:37:12] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 14:37:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 14:37:12] 2.12.6.0 3944044 1079 85540 146440 4 56 6024855 6144000 0 130560 0 1382622 99.992 309562 7012 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-05-26 14:37:12] CVMFS is ok
[2025-05-26 14:37:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-26 14:37:12] Small home clusters do not require a local http proxy but it is suggested if
[2025-05-26 14:37:12] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-05-26 14:37:12] Further information can be found at the LHC@home message board.
[2025-05-26 14:37:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 14:37:12] Checking for apptainer binary...
[2025-05-26 14:37:12] apptainer is not installed, using version from CVMFS
[2025-05-26 14:37:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 14:37:12] Debian-bookworm-latest-amd64-base
[2025-05-26 14:37:12] apptainer works
[2025-05-26 14:37:12] Set ATHENA_PROC_NUMBER=12
[2025-05-26 14:37:12] Set ATHENA_CORE_NUMBER=12
[2025-05-26 14:37:13] Starting ATLAS job with PandaID=6665737678
[2025-05-26 14:37:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 15:22:23]  *** The last 200 lines of the pilot log: ***
[2025-05-26 15:22:23]  lfn=log.44871837._038565.job.log.tgz.1
[2025-05-26 15:22:23]  mtime=0
[2025-05-26 15:22:23]  protocol_id=None
[2025-05-26 15:22:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-26 15:22:23]  replicas=None
[2025-05-26 15:22:23]  scope=mc23_13p6TeV
[2025-05-26 15:22:23]  status=None
[2025-05-26 15:22:23]  status_code=0
[2025-05-26 15:22:23]  storage_token=
[2025-05-26 15:22:23]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6665737678/log.44871837._038565.job.log.tgz.1
[2025-05-26 15:22:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/c0/log.44871837._038565.job.log.tgz.1
[2025-05-26 15:22:23]  workdir=None
[2025-05-26 15:22:23] ]
[2025-05-26 15:22:23] 2025-05-26 13:21:57,214 | INFO     | transferring file log.44871837._038565.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6665737678/log.44871837._038565.job.log.tgz.1 to /var/lib/boinc
[2025-05-26 15:22:23] 2025-05-26 13:21:57,214 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6665737678/log.44871837._038565.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.448718
[2025-05-26 15:22:23] 2025-05-26 13:21:57,231 | INFO     | adding to output.list: log.44871837._038565.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/c0/log.44871837._038565.job.log.tg
[2025-05-26 15:22:23] 2025-05-26 13:21:57,232 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-26 15:22:23] 2025-05-26 13:21:57,232 | INFO     | summary of transferred files:
[2025-05-26 15:22:23] 2025-05-26 13:21:57,232 | INFO     |  -- lfn=log.44871837._038565.job.log.tgz.1, status_code=0, status=transferred
[2025-05-26 15:22:23] 2025-05-26 13:21:57,232 | INFO     | stage-out finished correctly
[2025-05-26 15:22:23] 2025-05-26 13:21:59,133 | INFO     | monitor loop #208: job 0:6665737678 is in state 'finished'
[2025-05-26 15:22:23] 2025-05-26 13:21:59,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-26 15:22:23] 2025-05-26 13:21:59,278 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | job 6665737678 has state=finished
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | preparing for final server update for job 6665737678 in state='finished'
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | this job has now completed (state=finished)
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | log transfer has been attempted: DONE
[2025-05-26 15:22:23] 2025-05-26 13:21:59,614 | INFO     | job 6665737678 has finished - writing final server update
[2025-05-26 15:22:23] 2025-05-26 13:21:59,615 | INFO     | total number of processed events: 400 (read)
[2025-05-26 15:22:23] 2025-05-26 13:21:59,617 | INFO     | executing command: lscpu
[2025-05-26 15:22:23] 2025-05-26 13:21:59,637 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-26 15:22:23] 2025-05-26 13:22:01,636 | INFO     | monitor loop #209: job 0:6665737678 is in state 'finished'
[2025-05-26 15:22:23] 2025-05-26 13:22:01,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,134 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-26 15:22:23] 2025-05-26 13:22:04,134 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6665737678/memory_monitor_summary.json (trf name=prmon)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | INFO     | extracted standard info from prmon json
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | INFO     | extracted standard memory fields from prmon json
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | INFO     | fitting pss+swap vs Time
[2025-05-26 15:22:23] 2025-05-26 13:22:04,135 | INFO     | sum of square deviations: 15695178.0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | sum of deviations: -3851437763.9999995
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | mean x: 1748264458.0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | mean y: 3001141.2162162163
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | -- intersect: 429009397564.3846
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | intersect: 429009397564.3846
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | chi2: 0.056683232453565054
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | -- intersect: 429009397564.3846
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | current memory leak: -245.39 B/s (using 37 data points, chi2=0.06)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | ..............................
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . Timing measurements:
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . get job = 0 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . initial setup = 1 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . payload setup = 2 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . stage-in = 0 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . payload execution = 2660 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . stage-out = 0 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | . log creation = 0 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,136 | INFO     | ..............................
[2025-05-26 15:22:23] 2025-05-26 13:22:04,137 | INFO     | monitor loop #210: job 0:6665737678 is in state 'finished'
[2025-05-26 15:22:23] 2025-05-26 13:22:04,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | 
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | job summary report
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | --------------------------------------------------
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | PanDA job id: 6665737678
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | task id: 44871837
[2025-05-26 15:22:23] 2025-05-26 13:22:04,530 | INFO     | errors: (none)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | pilot state: finished 
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | transexitcode: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | exeerrorcode: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | exeerrordiag: 
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | exitcode: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | exitmsg: OK
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | cpuconsumptiontime: 29036 s
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | nevents: 400
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | neventsw: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | pid: 281855
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | pgrp: 281855
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | corecount: 12
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | event service: False
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | sizes: {0: 2393577, 1: 2393776, 2: 2393982, 11: 2394010, 2666: 2419305, 2667: 2428260, 2669: 2428444, 2674: 2428614}
[2025-05-26 15:22:23] 2025-05-26 13:22:04,531 | INFO     | --------------------------------------------------
[2025-05-26 15:22:23] 2025-05-26 13:22:04,532 | INFO     | 
[2025-05-26 15:22:23] 2025-05-26 13:22:04,532 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-05-26 15:22:23] 2025-05-26 13:22:04,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 15:22:23] 2025-05-26 13:22:04,548 | INFO     | job 6665737678 has completed (purged errors)
[2025-05-26 15:22:23] 2025-05-26 13:22:04,548 | INFO     | overall cleanup function is called
[2025-05-26 15:22:23] 2025-05-26 13:22:05,556 | INFO     | --- collectZombieJob: --- 10, [281855]
[2025-05-26 15:22:23] 2025-05-26 13:22:05,556 | INFO     | zombie collector waiting for pid 281855
[2025-05-26 15:22:23] 2025-05-26 13:22:05,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 15:22:23] 2025-05-26 13:22:05,556 | INFO     | collected zombie processes
[2025-05-26 15:22:23] 2025-05-26 13:22:05,557 | INFO     | will attempt to kill all subprocesses of pid=281855
[2025-05-26 15:22:23] 2025-05-26 13:22:05,615 | INFO     | process IDs to be killed: [281855] (in reverse order)
[2025-05-26 15:22:23] 2025-05-26 13:22:05,638 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 15:22:23] 2025-05-26 13:22:05,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 15:22:23] 2025-05-26 13:22:05,639 | INFO     | did not find any defunct processes belonging to 281855
[2025-05-26 15:22:23] 2025-05-26 13:22:05,641 | INFO     | did not find any defunct processes belonging to 281855
[2025-05-26 15:22:23] 2025-05-26 13:22:05,641 | INFO     | ready for new job
[2025-05-26 15:22:23] 2025-05-26 13:22:05,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 15:22:23] 2025-05-26 13:22:05,642 | INFO     | **************************************
[2025-05-26 15:22:23] 2025-05-26 13:22:05,642 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 15:22:23] 2025-05-26 13:22:05,642 | INFO     | **************************************
[2025-05-26 15:22:23] 2025-05-26 13:22:05,642 | INFO     | 
[2025-05-26 15:22:23] 2025-05-26 13:22:05,643 | INFO     | architecture information:
[2025-05-26 15:22:23] 2025-05-26 13:22:05,643 | INFO     | executing command: cat /etc/os-release
[2025-05-26 15:22:23] 2025-05-26 13:22:05,653 | INFO     | cat /etc/os-release:
[2025-05-26 15:22:23] NAME="CentOS Linux"
[2025-05-26 15:22:23] VERSION="7 (Core)"
[2025-05-26 15:22:23] ID="centos"
[2025-05-26 15:22:23] ID_LIKE="rhel fedora"
[2025-05-26 15:22:23] VERSION_ID="7"
[2025-05-26 15:22:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 15:22:23] ANSI_COLOR="0;31"
[2025-05-26 15:22:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 15:22:23] HOME_URL="https://www.centos.org/"
[2025-05-26 15:22:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 15:22:23] 
[2025-05-26 15:22:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 15:22:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 15:22:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 15:22:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 15:22:23] 
[2025-05-26 15:22:23] 2025-05-26 13:22:05,653 | INFO     | **************************************
[2025-05-26 15:22:23] 2025-05-26 13:22:06,156 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | INFO     | sufficient remaining disk space (818148278272 B)
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | INFO     | update_server=False
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 15:22:23] 2025-05-26 13:22:06,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:22:23] 2025-05-26 13:22:06,174 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-26 15:22:23] 2025-05-26 13:22:06,174 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 15:22:23] 2025-05-26 13:22:06,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 15:22:23] 2025-05-26 13:22:06,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 15:22:23] 2025-05-26 13:22:06,641 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-26 15:22:23] 2025-05-26 13:22:06,641 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-26 15:22:23] 2025-05-26 13:22:06,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:22:23] 2025-05-26 13:22:06,641 | INFO     | will abort loop
[2025-05-26 15:22:23] 2025-05-26 13:22:07,069 | INFO     | all data control threads have been joined
[2025-05-26 15:22:23] 2025-05-26 13:22:07,160 | INFO     | all payload control threads have been joined
[2025-05-26 15:22:23] 2025-05-26 13:22:07,178 | INFO     | [job] retrieve thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,179 | INFO     | [job] queue monitor thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,270 | INFO     | [job] validate thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,282 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,462 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,499 | INFO     | [payload] validate_post thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,646 | INFO     | [job] job monitor thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,706 | INFO     | [data] copytool_in thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:07,726 | INFO     | all job control threads have been joined
[2025-05-26 15:22:23] 2025-05-26 13:22:08,075 | INFO     | [data] control thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:08,165 | INFO     | [payload] control thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:08,179 | INFO     | [data] copytool_out thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:08,330 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:08,358 | INFO     | [payload] failed_post thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:08,731 | INFO     | [job] control thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:10,180 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:15,867 [wrapper] supervise_pilot (15 min periods counter: 4)
[2025-05-26 15:22:23] 2025-05-26 13:22:16,475 | INFO     | job.realtimelogging is not enabled
[2025-05-26 15:22:23] 2025-05-26 13:22:17,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 15:22:23] 2025-05-26 13:22:18,716 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852554803008)>', '<ExcThread(monitor, started 139852154648320)>']
[2025-05-26 15:22:23] 2025-05-26 13:22:19,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 15:22:23] 2025-05-26 13:22:19,240 | INFO     | [monitor] control thread has ended
[2025-05-26 15:22:23] 2025-05-26 13:22:23,741 | INFO     | all workflow threads have been joined
[2025-05-26 15:22:23] 2025-05-26 13:22:23,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 15:22:23] 2025-05-26 13:22:23,742 | INFO     | traces error code: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:23,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 15:22:23] 2025-05-26 13:22:23,824 [wrapper] ==== pilot stdout END ====
[2025-05-26 15:22:23] 2025-05-26 13:22:23,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 15:22:23] 2025-05-26 13:22:23,828 [wrapper] pilotpid: 275296
[2025-05-26 15:22:23] 2025-05-26 13:22:23,831 [wrapper] Pilot exit status: 0
[2025-05-26 15:22:23] 2025-05-26 13:22:23,838 [wrapper] pandaids: 6665737678
[2025-05-26 15:22:23] 2025-05-26 13:22:23,857 [wrapper] cleanup supervisor_pilot  294117 275297
[2025-05-26 15:22:23] 2025-05-26 13:22:23,858 [wrapper] Test setup, not cleaning
[2025-05-26 15:22:23] 2025-05-26 13:22:23,860 [wrapper] apfmon messages muted
[2025-05-26 15:22:23] 2025-05-26 13:22:23,862 [wrapper] ==== wrapper stdout END ====
[2025-05-26 15:22:23] 2025-05-26 13:22:23,863 [wrapper] ==== wrapper stderr END ====
[2025-05-26 15:22:23]  *** Error codes and diagnostics ***
[2025-05-26 15:22:23]     "exeErrorCode": 0,
[2025-05-26 15:22:23]     "exeErrorDiag": "",
[2025-05-26 15:22:23]     "pilotErrorCode": 0,
[2025-05-26 15:22:23]     "pilotErrorDiag": "",
[2025-05-26 15:22:23]  *** Listing of results directory ***
[2025-05-26 15:22:23] total 412924
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc    495897 May 25 19:46 pilot3.tar.gz
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc      5111 May 25 20:05 queuedata.json
[2025-05-26 15:22:23] -rwx------ 1 boinc boinc     37140 May 25 20:07 runpilot2-wrapper.sh
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc       100 May 26 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 15:22:23] -rwxr-xr-x 1 boinc boinc      7986 May 26 14:37 run_atlas
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc       105 May 26 14:37 job.xml
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc     15093 May 26 14:37 start_atlas.sh
[2025-05-26 15:22:23] drwxrwx--x 2 boinc boinc      4096 May 26 14:37 shared
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc    508881 May 26 14:37 input.tar.gz
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc      6727 May 26 14:37 init_data.xml
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc 225023950 May 26 14:37 EVNT.44871834._001538.pool.root.1
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc         0 May 26 14:37 boinc_lockfile
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc      2559 May 26 14:37 pandaJob.out
[2025-05-26 15:22:23] -rw------- 1 boinc boinc    990445 May 26 14:37 agis_schedconf.cvmfs.json
[2025-05-26 15:22:23] -rw------- 1 boinc boinc   1596740 May 26 14:37 agis_ddmendpoints.agis.ALL.json
[2025-05-26 15:22:23] drwx------ 4 boinc boinc      4096 May 26 14:37 pilot3
[2025-05-26 15:22:23] -rw------- 1 boinc boinc        95 May 26 15:21 pilot_heartbeat.json
[2025-05-26 15:22:23] -rw------- 1 boinc boinc 192705473 May 26 15:21 HITS.44871837._038565.pool.root.1
[2025-05-26 15:22:23] -rw------- 1 boinc boinc      1012 May 26 15:21 memory_monitor_summary.json
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc      8192 May 26 15:21 boinc_mmap_file
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc        27 May 26 15:21 wrapper_checkpoint.txt
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc       529 May 26 15:21 boinc_task_state.xml
[2025-05-26 15:22:23] -rw------- 1 boinc boinc    349657 May 26 15:21 log.44871837._038565.job.log.tgz.1
[2025-05-26 15:22:23] -rw------- 1 boinc boinc      7696 May 26 15:22 heartbeat.json
[2025-05-26 15:22:23] -rw------- 1 boinc boinc      4742 May 26 15:22 pilotlog.txt
[2025-05-26 15:22:23] -rw------- 1 boinc boinc    284674 May 26 15:22 log.44871837._038565.job.log.1
[2025-05-26 15:22:23] -rw------- 1 boinc boinc       357 May 26 15:22 output.list
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc       620 May 26 15:22 runtime_log
[2025-05-26 15:22:23] -rw------- 1 boinc boinc    655360 May 26 15:22 result.tar.gz
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc      8960 May 26 15:22 runtime_log.err
[2025-05-26 15:22:23] -rw------- 1 boinc boinc       706 May 26 15:22 IH7KDmrvUd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWnUKDm5giVXm.diag
[2025-05-26 15:22:23] -rw-r--r-- 1 boinc boinc     21673 May 26 15:22 stderr.txt
[2025-05-26 15:22:23] HITS file was successfully produced:
[2025-05-26 15:22:23] -rw------- 1 boinc boinc 192705473 May 26 15:21 shared/HITS.pool.root.1
[2025-05-26 15:22:23]  *** Contents of shared directory: ***
[2025-05-26 15:22:23] total 409108
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc     15093 May 26 14:37 start_atlas.sh
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc    508881 May 26 14:37 input.tar.gz
[2025-05-26 15:22:23] -rw-r--r-- 2 boinc boinc 225023950 May 26 14:37 ATLAS.root_0
[2025-05-26 15:22:23] -rw------- 1 boinc boinc 192705473 May 26 15:21 HITS.pool.root.1
[2025-05-26 15:22:23] -rw------- 1 boinc boinc    655360 May 26 15:22 result.tar.gz
15:22:25 (271561): run_atlas exited; CPU time 29049.654875
15:22:25 (271561): called boinc_finish(0)

</stderr_txt>
]]>

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