Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:16:15 (20995): wrapper (7.7.26015): starting
18:16:15 (20995): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 18:16:15] Arguments: --nthreads 8
[2025-05-26 18:16:15] Threads: 8
[2025-05-26 18:16:15] Checking for CVMFS
[2025-05-26 18:16:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 18:16:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 18:16:16] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 18:16:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 18:16:17] 2.11.2.0 20015 20485 89220 146448 0 171 24455101 25165825 3176 130560 0 11259869 99.788 13412293 1609 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 18:16:17] CVMFS is ok
[2025-05-26 18:16:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 18:16:17] Checking for apptainer binary...
[2025-05-26 18:16:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 18:16:17] Running /usr/bin/apptainer --version
[2025-05-26 18:16:18] apptainer version 1.3.2-1.el7
[2025-05-26 18:16:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 18:16:31] cg-vwn356.simple-grid.lan
[2025-05-26 18:16:31] apptainer works
[2025-05-26 18:16:31] Set ATHENA_PROC_NUMBER=8
[2025-05-26 18:16:31] Set ATHENA_CORE_NUMBER=8
[2025-05-26 18:16:31] Starting ATLAS job with PandaID=6665752469
[2025-05-26 18:16:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 23:38:21]  *** The last 200 lines of the pilot log: ***
[2025-05-26 23:38:21] 2025-05-26 21:21:42,842 | INFO     | extracted standard memory fields from prmon json
[2025-05-26 23:38:21] 2025-05-26 21:21:42,842 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-26 23:38:21] 2025-05-26 21:21:42,843 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-26 23:38:21] 2025-05-26 21:21:42,843 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-26 23:38:21] 2025-05-26 21:21:42,849 | INFO     | fitting pss+swap vs Time
[2025-05-26 23:38:21] 2025-05-26 21:21:42,850 | INFO     | sum of square deviations: 8123493708.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,853 | INFO     | sum of deviations: 50767635032.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,853 | INFO     | mean x: 1748285300.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,854 | INFO     | mean y: 2492226.5656565656
[2025-05-26 23:38:21] 2025-05-26 21:21:42,854 | INFO     | -- intersect: -10923386863.462269
[2025-05-26 23:38:21] 2025-05-26 21:21:42,854 | INFO     | intersect: -10923386863.462269
[2025-05-26 23:38:21] 2025-05-26 21:21:42,854 | INFO     | chi2: 1.4685887707200016
[2025-05-26 23:38:21] 2025-05-26 21:21:42,855 | INFO     | sum of square deviations: 7720081493.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,876 | INFO     | sum of deviations: 49746332711.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,877 | INFO     | mean x: 1748285147.5
[2025-05-26 23:38:21] 2025-05-26 21:21:42,877 | INFO     | mean y: 2491841.3493150687
[2025-05-26 23:38:21] 2025-05-26 21:21:42,877 | INFO     | -- intersect: -11263033619.760569
[2025-05-26 23:38:21] 2025-05-26 21:21:42,877 | INFO     | intersect: -11263033619.760569
[2025-05-26 23:38:21] 2025-05-26 21:21:42,878 | INFO     | chi2: 1.4688813437616464
[2025-05-26 23:38:21] 2025-05-26 21:21:42,878 | INFO     | current chi2=1.4688813437616464 (change=-0.01992205357128819 %)
[2025-05-26 23:38:21] 2025-05-26 21:21:42,878 | INFO     | right removable region: 291
[2025-05-26 23:38:21] 2025-05-26 21:21:42,878 | INFO     | sum of square deviations: 7720081493.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,881 | INFO     | sum of deviations: 5056933946.499999
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | mean x: 1748285452.5
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | mean y: 2509376.565068493
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | -- intersect: -1142681132.2314637
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | intersect: -1142681132.2314637
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | chi2: 0.033984947878723276
[2025-05-26 23:38:21] 2025-05-26 21:21:42,882 | INFO     | current chi2=0.033984947878723276 (change=97.68587717975934 %)
[2025-05-26 23:38:21] 2025-05-26 21:21:42,883 | INFO     | sum of square deviations: 7330250928.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,886 | INFO     | sum of deviations: -1257738199.0000002
[2025-05-26 23:38:21] 2025-05-26 21:21:42,886 | INFO     | mean x: 1748285605.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,886 | INFO     | mean y: 2511844.7351916377
[2025-05-26 23:38:21] 2025-05-26 21:21:42,886 | INFO     | -- intersect: 302485967.00855756
[2025-05-26 23:38:21] 2025-05-26 21:21:42,886 | INFO     | intersect: 302485967.00855756
[2025-05-26 23:38:21] 2025-05-26 21:21:42,887 | INFO     | chi2: 0.00499750839698388
[2025-05-26 23:38:21] 2025-05-26 21:21:42,887 | INFO     | current chi2=0.00499750839698388 (change=85.29493582035876 %)
[2025-05-26 23:38:21] 2025-05-26 21:21:42,887 | INFO     | sum of square deviations: 6953769450.5
[2025-05-26 23:38:21] 2025-05-26 21:21:42,890 | INFO     | sum of deviations: -2639454933.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,890 | INFO     | mean x: 1748285757.5
[2025-05-26 23:38:21] 2025-05-26 21:21:42,890 | INFO     | mean y: 2512402.524822695
[2025-05-26 23:38:21] 2025-05-26 21:21:42,891 | INFO     | -- intersect: 666112411.0921497
[2025-05-26 23:38:21] 2025-05-26 21:21:42,891 | INFO     | intersect: 666112411.0921497
[2025-05-26 23:38:21] 2025-05-26 21:21:42,891 | INFO     | chi2: 0.003971162102986629
[2025-05-26 23:38:21] 2025-05-26 21:21:42,891 | INFO     | current chi2=0.003971162102986629 (change=20.537159969889725 %)
[2025-05-26 23:38:21] 2025-05-26 21:21:42,892 | INFO     | left removable region: 30
[2025-05-26 23:38:21] 2025-05-26 21:21:42,892 | INFO     | sum of square deviations: 5513070810.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,902 | INFO     | sum of deviations: -2339827996.0000014
[2025-05-26 23:38:21] 2025-05-26 21:21:42,902 | INFO     | mean x: 1748286032.0
[2025-05-26 23:38:21] 2025-05-26 21:21:42,902 | INFO     | mean y: 2512174.0153256706
[2025-05-26 23:38:21] 2025-05-26 21:21:42,902 | INFO     | -- intersect: 744510371.3302182
[2025-05-26 23:38:21] 2025-05-26 21:21:42,902 | INFO     | intersect: 744510371.3302182
[2025-05-26 23:38:21] 2025-05-26 21:21:42,903 | INFO     | chi2: 0.0036327567103857364
[2025-05-26 23:38:21] 2025-05-26 21:21:42,903 | INFO     | -- intersect: 744510371.3302182
[2025-05-26 23:38:21] 2025-05-26 21:21:42,903 | INFO     | current memory leak: -0.42 B/s (using 261 data points, chi2=0.00)
[2025-05-26 23:38:21] 2025-05-26 21:21:42,904 | INFO     | ..............................
[2025-05-26 23:38:21] 2025-05-26 21:21:42,904 | INFO     | . Timing measurements:
[2025-05-26 23:38:21] 2025-05-26 21:21:42,904 | INFO     | . get job = 0 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,904 | INFO     | . initial setup = 2 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | . payload setup = 12 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | . stage-in = 0 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | . payload execution = 18144 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | . stage-out = 4 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | . log creation = 1 s
[2025-05-26 23:38:21] 2025-05-26 21:21:42,905 | INFO     | ..............................
[2025-05-26 23:38:21] 2025-05-26 21:21:43,095 | INFO     | 
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | job summary report
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | --------------------------------------------------
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | PanDA job id: 6665752469
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | task id: 44871837
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | errors: (none)
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | pilot state: finished 
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | transexitcode: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:43,096 | INFO     | exeerrorcode: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | exeerrordiag: 
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | exitcode: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | exitmsg: OK
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | cpuconsumptiontime: 69869 s
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | nevents: 400
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | neventsw: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | pid: 848
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | pgrp: 848
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | corecount: 8
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | event service: False
[2025-05-26 23:38:21] 2025-05-26 21:21:43,097 | INFO     | sizes: {0: 2405008, 1: 2405263, 2: 2405263, 8: 2405497, 12: 2405525, 18160: 2437262, 18165: 2446259, 18271: 2446373}
[2025-05-26 23:38:21] 2025-05-26 21:21:43,098 | INFO     | --------------------------------------------------
[2025-05-26 23:38:21] 2025-05-26 21:21:43,098 | INFO     | 
[2025-05-26 23:38:21] 2025-05-26 21:21:43,098 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-26 23:38:21] 2025-05-26 21:21:43,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 23:38:21] 2025-05-26 21:21:43,748 | INFO     | job 6665752469 has completed (purged errors)
[2025-05-26 23:38:21] 2025-05-26 21:21:43,749 | INFO     | overall cleanup function is called
[2025-05-26 23:38:21] 2025-05-26 21:21:44,757 | INFO     | --- collectZombieJob: --- 10, [848]
[2025-05-26 23:38:21] 2025-05-26 21:21:44,758 | INFO     | zombie collector waiting for pid 848
[2025-05-26 23:38:21] 2025-05-26 21:21:44,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 23:38:21] 2025-05-26 21:21:44,758 | INFO     | collected zombie processes
[2025-05-26 23:38:21] 2025-05-26 21:21:44,758 | INFO     | will attempt to kill all subprocesses of pid=848
[2025-05-26 23:38:21] 2025-05-26 21:21:44,892 | INFO     | process IDs to be killed: [848] (in reverse order)
[2025-05-26 23:38:21] 2025-05-26 21:21:45,631 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 23:38:21] 2025-05-26 21:21:45,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 23:38:21] 2025-05-26 21:21:45,635 | INFO     | did not find any defunct processes belonging to 848
[2025-05-26 23:38:21] 2025-05-26 21:21:45,638 | INFO     | did not find any defunct processes belonging to 848
[2025-05-26 23:38:21] 2025-05-26 21:21:45,638 | INFO     | ready for new job
[2025-05-26 23:38:21] 2025-05-26 21:21:45,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 23:38:21] 2025-05-26 21:21:45,640 | INFO     | **************************************
[2025-05-26 23:38:21] 2025-05-26 21:21:45,641 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 23:38:21] 2025-05-26 21:21:45,641 | INFO     | **************************************
[2025-05-26 23:38:21] 2025-05-26 21:21:45,641 | INFO     | 
[2025-05-26 23:38:21] 2025-05-26 21:21:45,641 | INFO     | pilot is running in a VM
[2025-05-26 23:38:21] 2025-05-26 21:21:45,642 | INFO     | architecture information:
[2025-05-26 23:38:21] 2025-05-26 21:21:45,648 | INFO     | executing command: cat /etc/os-release
[2025-05-26 23:38:21] 2025-05-26 21:21:45,914 | INFO     | cat /etc/os-release:
[2025-05-26 23:38:21] NAME="CentOS Linux"
[2025-05-26 23:38:21] VERSION="7 (Core)"
[2025-05-26 23:38:21] ID="centos"
[2025-05-26 23:38:21] ID_LIKE="rhel fedora"
[2025-05-26 23:38:21] VERSION_ID="7"
[2025-05-26 23:38:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 23:38:21] ANSI_COLOR="0;31"
[2025-05-26 23:38:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 23:38:21] HOME_URL="https://www.centos.org/"
[2025-05-26 23:38:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 23:38:21] 
[2025-05-26 23:38:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 23:38:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 23:38:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 23:38:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 23:38:21] 
[2025-05-26 23:38:21] 2025-05-26 21:21:45,914 | INFO     | **************************************
[2025-05-26 23:38:21] 2025-05-26 21:21:46,419 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-26 23:38:21] 2025-05-26 21:21:46,683 | INFO     | sufficient remaining disk space (494584987648 B)
[2025-05-26 23:38:21] 2025-05-26 21:21:46,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 23:38:21] 2025-05-26 21:21:46,684 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 23:38:21] 2025-05-26 21:21:46,684 | INFO     | update_server=False
[2025-05-26 23:38:21] 2025-05-26 21:21:46,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 23:38:21] 2025-05-26 21:21:46,931 | INFO     | PID=26394 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-26 23:38:21] 2025-05-26 21:21:46,931 | INFO     | .. there are 9 such processes running
[2025-05-26 23:38:21] 2025-05-26 21:21:46,931 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 23:38:21] 2025-05-26 21:21:46,931 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 23:38:21] 2025-05-26 21:21:46,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 23:38:21] 2025-05-26 21:21:47,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 23:38:21] 2025-05-26 21:21:47,006 | INFO     | aborting loop
[2025-05-26 23:38:21] 2025-05-26 21:21:47,045 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 23:38:21] 2025-05-26 21:21:47,355 | INFO     | all job control threads have been joined
[2025-05-26 23:38:21] 2025-05-26 21:21:47,437 | INFO     | all data control threads have been joined
[2025-05-26 23:38:21] 2025-05-26 21:21:47,690 | INFO     | [job] retrieve thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:47,919 | INFO     | all payload control threads have been joined
[2025-05-26 23:38:21] 2025-05-26 21:21:47,942 | INFO     | [data] copytool_in thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:47,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 23:38:21] 2025-05-26 21:21:48,014 | INFO     | [job] job monitor thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 23:38:21] 2025-05-26 21:21:48,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,361 | INFO     | [job] control thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,395 | INFO     | [payload] failed_post thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,444 | INFO     | [data] control thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,477 | INFO     | [job] validate thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,477 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,925 | INFO     | [payload] control thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,948 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:48,951 | INFO     | [payload] validate_post thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:49,073 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:49,117 | INFO     | [job] queue monitor thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:49,976 | INFO     | [data] copytool_out thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:51,054 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 23:38:21] 2025-05-26 21:21:51,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140002875656000)>', '<ExcThread(monitor, started 140002293962496)>']
[2025-05-26 23:38:21] 2025-05-26 21:21:51,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 23:38:21] 2025-05-26 21:21:51,963 | INFO     | [monitor] control thread has ended
[2025-05-26 23:38:21] 2025-05-26 21:21:56,878 | INFO     | all workflow threads have been joined
[2025-05-26 23:38:21] 2025-05-26 21:21:56,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 23:38:21] 2025-05-26 21:21:56,879 | INFO     | traces error code: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:56,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 23:38:21] 2025-05-26 21:21:57,228 [wrapper] ==== pilot stdout END ====
[2025-05-26 23:38:21] 2025-05-26 21:21:57,301 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 23:38:21] 2025-05-26 21:21:57,391 [wrapper] pilotpid: 26394
[2025-05-26 23:38:21] 2025-05-26 21:21:57,485 [wrapper] Pilot exit status: 0
[2025-05-26 23:38:21] 2025-05-26 21:21:57,920 [wrapper] pandaids: 6665752469
[2025-05-26 23:38:21] 2025-05-26 21:21:58,563 [wrapper] cleanup supervisor_pilot 14360 26395
[2025-05-26 23:38:21] 2025-05-26 21:21:58,660 [wrapper] Test setup, not cleaning
[2025-05-26 23:38:21] 2025-05-26 21:21:58,720 [wrapper] apfmon messages muted
[2025-05-26 23:38:21] 2025-05-26 21:21:58,809 [wrapper] ==== wrapper stdout END ====
[2025-05-26 23:38:21] 2025-05-26 21:21:58,868 [wrapper] ==== wrapper stderr END ====
[2025-05-26 23:38:21]  *** Error codes and diagnostics ***
[2025-05-26 23:38:21]     "exeErrorCode": 0,
[2025-05-26 23:38:21]     "exeErrorDiag": "",
[2025-05-26 23:38:21]     "pilotErrorCode": 0,
[2025-05-26 23:38:21]     "pilotErrorDiag": "",
[2025-05-26 23:38:21]  *** Listing of results directory ***
[2025-05-26 23:38:21] total 418300
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc    495897 May 26 04:44 pilot3.tar.gz
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc      5111 May 26 04:54 queuedata.json
[2025-05-26 23:38:21] -rwx------. 1 boinc boinc     37140 May 26 04:54 runpilot2-wrapper.sh
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc       100 May 26 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 23:38:21] -rwxr-xr-x. 1 boinc boinc      7986 May 26 18:16 run_atlas
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc       105 May 26 18:16 job.xml
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc      6372 May 26 18:16 init_data.xml
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc 223092292 May 26 18:16 EVNT.44871834._001783.pool.root.1
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc     15093 May 26 18:16 start_atlas.sh
[2025-05-26 23:38:21] drwxrwx--x. 2 boinc boinc        68 May 26 18:16 shared
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc    508876 May 26 18:16 input.tar.gz
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc         0 May 26 18:16 boinc_lockfile
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc      2560 May 26 18:16 pandaJob.out
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc    990394 May 26 18:16 agis_schedconf.cvmfs.json
[2025-05-26 23:38:21] drwx------. 4 boinc boinc      4096 May 26 18:16 pilot3
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc 197454356 May 26 23:18 HITS.44871837._044691.pool.root.1
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc       531 May 26 23:18 boinc_task_state.xml
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc      1017 May 26 23:19 memory_monitor_summary.json
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc   1603667 May 26 23:19 agis_ddmendpoints.agis.ALL.json
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc    419505 May 26 23:19 log.44871837._044691.job.log.tgz.1
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc        95 May 26 23:21 pilot_heartbeat.json
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc      7687 May 26 23:21 heartbeat.json
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc      4808 May 26 23:21 pilotlog.txt
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc   1563244 May 26 23:21 log.44871837._044691.job.log.1
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc       357 May 26 23:22 output.list
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc       620 May 26 23:22 runtime_log
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc   2007040 May 26 23:22 result.tar.gz
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc      8659 May 26 23:22 runtime_log.err
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc       657 May 26 23:22 cCGLDmx9cd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtlVKDm14RBIo.diag
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc      8192 May 26 23:38 boinc_mmap_file
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc        28 May 26 23:38 wrapper_checkpoint.txt
[2025-05-26 23:38:21] -rw-r--r--. 1 boinc boinc     20543 May 26 23:38 stderr.txt
[2025-05-26 23:38:21] HITS file was successfully produced:
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc 197454356 May 26 23:18 shared/HITS.pool.root.1
[2025-05-26 23:38:21]  *** Contents of shared directory: ***
[2025-05-26 23:38:21] total 413168
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc 223092292 May 26 18:16 ATLAS.root_0
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc     15093 May 26 18:16 start_atlas.sh
[2025-05-26 23:38:21] -rw-r--r--. 2 boinc boinc    508876 May 26 18:16 input.tar.gz
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc 197454356 May 26 23:18 HITS.pool.root.1
[2025-05-26 23:38:21] -rw-------. 1 boinc boinc   2007040 May 26 23:22 result.tar.gz
23:38:23 (20995): run_atlas exited; CPU time 70110.500390
23:38:23 (20995): called boinc_finish(0)

</stderr_txt>
]]>

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