Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:06:08 (25489): wrapper (7.7.26015): starting
15:06:08 (25489): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 15:06:08] Arguments: --nthreads 8
[2025-05-26 15:06:08] Threads: 8
[2025-05-26 15:06:08] Checking for CVMFS
[2025-05-26 15:06:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 15:06:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 15:06:10] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 15:06:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 15:06:11] 2.11.2.0 26253 20283 94304 146440 2 16 20856876 25165824 3032 130560 0 11818210 99.759 13323308 1946 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 15:06:11] CVMFS is ok
[2025-05-26 15:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 15:06:11] Checking for apptainer binary...
[2025-05-26 15:06:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 15:06:11] Running /usr/bin/apptainer --version
[2025-05-26 15:06:11] apptainer version 1.3.2-1.el7
[2025-05-26 15:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 15:31:13] cg-vwn377.simple-grid.lan
[2025-05-26 15:31:13] apptainer works
[2025-05-26 15:31:13] Set ATHENA_PROC_NUMBER=8
[2025-05-26 15:31:13] Set ATHENA_CORE_NUMBER=8
[2025-05-26 15:31:13] Starting ATLAS job with PandaID=6665743988
[2025-05-26 15:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 22:01:46]  *** The last 200 lines of the pilot log: ***
[2025-05-26 22:01:46] 2025-05-26 18:32:33,864 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6665743988/memory_monitor_summary.json (trf name=prmon)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,865 | INFO     | extracted standard info from prmon json
[2025-05-26 22:01:46] 2025-05-26 18:32:33,865 | INFO     | extracted standard memory fields from prmon json
[2025-05-26 22:01:46] 2025-05-26 18:32:33,865 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-26 22:01:46] 2025-05-26 18:32:33,865 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-26 22:01:46] 2025-05-26 18:32:33,865 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-26 22:01:46] 2025-05-26 18:32:33,871 | INFO     | fitting pss+swap vs Time
[2025-05-26 22:01:46] 2025-05-26 18:32:33,872 | INFO     | sum of square deviations: 7879803557.5
[2025-05-26 22:01:46] 2025-05-26 18:32:33,875 | INFO     | sum of deviations: 11441665598.499996
[2025-05-26 22:01:46] 2025-05-26 18:32:33,875 | INFO     | mean x: 1748275285.5
[2025-05-26 22:01:46] 2025-05-26 18:32:33,875 | INFO     | mean y: 2487394.1258503404
[2025-05-26 22:01:46] 2025-05-26 18:32:33,875 | INFO     | -- intersect: -2536050660.1349154
[2025-05-26 22:01:46] 2025-05-26 18:32:33,876 | INFO     | intersect: -2536050660.1349154
[2025-05-26 22:01:46] 2025-05-26 18:32:33,876 | INFO     | chi2: 2.440316127530655
[2025-05-26 22:01:46] 2025-05-26 18:32:33,877 | INFO     | sum of square deviations: 7484568240.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,886 | INFO     | sum of deviations: 30527861322.999996
[2025-05-26 22:01:46] 2025-05-26 18:32:33,886 | INFO     | mean x: 1748275133.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,886 | INFO     | mean y: 2494654.4671280277
[2025-05-26 22:01:46] 2025-05-26 18:32:33,886 | INFO     | -- intersect: -7128324265.646476
[2025-05-26 22:01:46] 2025-05-26 18:32:33,886 | INFO     | intersect: -7128324265.646476
[2025-05-26 22:01:46] 2025-05-26 18:32:33,887 | INFO     | chi2: 1.6672471835320528
[2025-05-26 22:01:46] 2025-05-26 18:32:33,887 | INFO     | current chi2=1.6672471835320528 (change=31.67904909028599 %)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,887 | INFO     | sum of square deviations: 7102775035.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,890 | INFO     | sum of deviations: 29748309901.500015
[2025-05-26 22:01:46] 2025-05-26 18:32:33,890 | INFO     | mean x: 1748274980.5
[2025-05-26 22:01:46] 2025-05-26 18:32:33,890 | INFO     | mean y: 2494343.073943662
[2025-05-26 22:01:46] 2025-05-26 18:32:33,891 | INFO     | -- intersect: -7319746000.548722
[2025-05-26 22:01:46] 2025-05-26 18:32:33,891 | INFO     | intersect: -7319746000.548722
[2025-05-26 22:01:46] 2025-05-26 18:32:33,891 | INFO     | chi2: 1.6678083083520114
[2025-05-26 22:01:46] 2025-05-26 18:32:33,891 | INFO     | current chi2=1.6678083083520114 (change=-0.03365576655345643 %)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,891 | INFO     | right removable region: 283
[2025-05-26 22:01:46] 2025-05-26 18:32:33,892 | INFO     | sum of square deviations: 7484568240.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,895 | INFO     | sum of deviations: -37223500398.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,895 | INFO     | mean x: 1748275438.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,895 | INFO     | mean y: 2506041.7370242216
[2025-05-26 22:01:46] 2025-05-26 18:32:33,895 | INFO     | -- intersect: 8697320408.50491
[2025-05-26 22:01:46] 2025-05-26 18:32:33,895 | INFO     | intersect: 8697320408.50491
[2025-05-26 22:01:46] 2025-05-26 18:32:33,896 | INFO     | chi2: 0.9050606554774621
[2025-05-26 22:01:46] 2025-05-26 18:32:33,896 | INFO     | current chi2=0.9050606554774621 (change=62.91215530369465 %)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,896 | INFO     | sum of square deviations: 7102775035.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,899 | INFO     | sum of deviations: -31104080712.5
[2025-05-26 22:01:46] 2025-05-26 18:32:33,899 | INFO     | mean x: 1748275590.5
[2025-05-26 22:01:46] 2025-05-26 18:32:33,899 | INFO     | mean y: 2503581.8908450706
[2025-05-26 22:01:46] 2025-05-26 18:32:33,899 | INFO     | -- intersect: 7658455629.737957
[2025-05-26 22:01:46] 2025-05-26 18:32:33,899 | INFO     | intersect: 7658455629.737957
[2025-05-26 22:01:46] 2025-05-26 18:32:33,900 | INFO     | chi2: 0.8852779863791223
[2025-05-26 22:01:46] 2025-05-26 18:32:33,900 | INFO     | current chi2=0.8852779863791223 (change=2.185783790137637 %)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,900 | INFO     | left removable region: 20
[2025-05-26 22:01:46] 2025-05-26 18:32:33,901 | INFO     | sum of square deviations: 5640782972.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,903 | INFO     | sum of deviations: 6982498224.000002
[2025-05-26 22:01:46] 2025-05-26 18:32:33,903 | INFO     | mean x: 1748275560.0
[2025-05-26 22:01:46] 2025-05-26 18:32:33,903 | INFO     | mean y: 2502691.8326996197
[2025-05-26 22:01:46] 2025-05-26 18:32:33,904 | INFO     | -- intersect: -2161617263.3859224
[2025-05-26 22:01:46] 2025-05-26 18:32:33,904 | INFO     | intersect: -2161617263.3859224
[2025-05-26 22:01:46] 2025-05-26 18:32:33,904 | INFO     | chi2: 0.012562507726090532
[2025-05-26 22:01:46] 2025-05-26 18:32:33,904 | INFO     | -- intersect: -2161617263.3859224
[2025-05-26 22:01:46] 2025-05-26 18:32:33,904 | INFO     | current memory leak: 1.24 B/s (using 263 data points, chi2=0.01)
[2025-05-26 22:01:46] 2025-05-26 18:32:33,905 | INFO     | ..............................
[2025-05-26 22:01:46] 2025-05-26 18:32:33,905 | INFO     | . Timing measurements:
[2025-05-26 22:01:46] 2025-05-26 18:32:33,905 | INFO     | . get job = 0 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,905 | INFO     | . initial setup = 1 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | . payload setup = 13 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | . stage-in = 0 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | . payload execution = 17927 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | . stage-out = 2 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | . log creation = 0 s
[2025-05-26 22:01:46] 2025-05-26 18:32:33,906 | INFO     | ..............................
[2025-05-26 22:01:46] 2025-05-26 18:32:34,216 | INFO     | 
[2025-05-26 22:01:46] 2025-05-26 18:32:34,216 | INFO     | job summary report
[2025-05-26 22:01:46] 2025-05-26 18:32:34,216 | INFO     | --------------------------------------------------
[2025-05-26 22:01:46] 2025-05-26 18:32:34,216 | INFO     | PanDA job id: 6665743988
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | task id: 44871837
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | errors: (none)
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | pilot state: finished 
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | transexitcode: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | exeerrorcode: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | exeerrordiag: 
[2025-05-26 22:01:46] 2025-05-26 18:32:34,217 | INFO     | exitcode: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | exitmsg: OK
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | cpuconsumptiontime: 68434 s
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | nevents: 400
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | neventsw: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | pid: 20284
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | pgrp: 20284
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | corecount: 8
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | event service: False
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | sizes: {0: 2405063, 1: 2405262, 10: 2405468, 11: 2405496, 17946: 2437095, 17949: 2446036, 17951: 2446220, 18039: 2446390}
[2025-05-26 22:01:46] 2025-05-26 18:32:34,218 | INFO     | --------------------------------------------------
[2025-05-26 22:01:46] 2025-05-26 18:32:34,219 | INFO     | 
[2025-05-26 22:01:46] 2025-05-26 18:32:34,219 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-26 22:01:46] 2025-05-26 18:32:34,849 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,850 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,851 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 22:01:46] 2025-05-26 18:32:34,852 | INFO     | job 6665743988 has completed (purged errors)
[2025-05-26 22:01:46] 2025-05-26 18:32:34,852 | INFO     | overall cleanup function is called
[2025-05-26 22:01:46] 2025-05-26 18:32:35,860 | INFO     | --- collectZombieJob: --- 10, [20284]
[2025-05-26 22:01:46] 2025-05-26 18:32:35,860 | INFO     | zombie collector waiting for pid 20284
[2025-05-26 22:01:46] 2025-05-26 18:32:35,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 22:01:46] 2025-05-26 18:32:35,860 | INFO     | collected zombie processes
[2025-05-26 22:01:46] 2025-05-26 18:32:35,861 | INFO     | will attempt to kill all subprocesses of pid=20284
[2025-05-26 22:01:46] 2025-05-26 18:32:35,965 | INFO     | process IDs to be killed: [20284] (in reverse order)
[2025-05-26 22:01:46] 2025-05-26 18:32:36,672 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 22:01:46] 2025-05-26 18:32:36,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 22:01:46] 2025-05-26 18:32:36,675 | INFO     | did not find any defunct processes belonging to 20284
[2025-05-26 22:01:46] 2025-05-26 18:32:36,678 | INFO     | did not find any defunct processes belonging to 20284
[2025-05-26 22:01:46] 2025-05-26 18:32:36,679 | INFO     | ready for new job
[2025-05-26 22:01:46] 2025-05-26 18:32:36,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 22:01:46] 2025-05-26 18:32:36,681 | INFO     | **************************************
[2025-05-26 22:01:46] 2025-05-26 18:32:36,681 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 22:01:46] 2025-05-26 18:32:36,681 | INFO     | **************************************
[2025-05-26 22:01:46] 2025-05-26 18:32:36,681 | INFO     | 
[2025-05-26 22:01:46] 2025-05-26 18:32:36,682 | INFO     | pilot is running in a VM
[2025-05-26 22:01:46] 2025-05-26 18:32:36,682 | INFO     | architecture information:
[2025-05-26 22:01:46] 2025-05-26 18:32:36,688 | INFO     | executing command: cat /etc/os-release
[2025-05-26 22:01:46] 2025-05-26 18:32:36,860 | INFO     | cat /etc/os-release:
[2025-05-26 22:01:46] NAME="CentOS Linux"
[2025-05-26 22:01:46] VERSION="7 (Core)"
[2025-05-26 22:01:46] ID="centos"
[2025-05-26 22:01:46] ID_LIKE="rhel fedora"
[2025-05-26 22:01:46] VERSION_ID="7"
[2025-05-26 22:01:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 22:01:46] ANSI_COLOR="0;31"
[2025-05-26 22:01:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 22:01:46] HOME_URL="https://www.centos.org/"
[2025-05-26 22:01:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 22:01:46] 
[2025-05-26 22:01:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 22:01:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 22:01:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 22:01:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 22:01:46] 
[2025-05-26 22:01:46] 2025-05-26 18:32:36,860 | INFO     | **************************************
[2025-05-26 22:01:46] 2025-05-26 18:32:37,362 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-26 22:01:46] 2025-05-26 18:32:37,649 | INFO     | sufficient remaining disk space (495670263808 B)
[2025-05-26 22:01:46] 2025-05-26 18:32:37,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 22:01:46] 2025-05-26 18:32:37,650 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 22:01:46] 2025-05-26 18:32:37,650 | INFO     | update_server=False
[2025-05-26 22:01:46] 2025-05-26 18:32:37,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 22:01:46] 2025-05-26 18:32:37,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 22:01:46] 2025-05-26 18:32:37,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 22:01:46] 2025-05-26 18:32:38,074 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 22:01:46] 2025-05-26 18:32:38,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 22:01:46] 2025-05-26 18:32:38,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 22:01:46] 2025-05-26 18:32:38,414 | INFO     | all data control threads have been joined
[2025-05-26 22:01:46] 2025-05-26 18:32:38,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 22:01:46] 2025-05-26 18:32:38,590 | INFO     | aborting loop
[2025-05-26 22:01:46] 2025-05-26 18:32:38,656 | INFO     | [job] retrieve thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:38,795 | INFO     | all payload control threads have been joined
[2025-05-26 22:01:46] 2025-05-26 18:32:38,887 | INFO     | all job control threads have been joined
[2025-05-26 22:01:46] 2025-05-26 18:32:39,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 22:01:46] 2025-05-26 18:32:39,066 | INFO     | [data] copytool_in thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,072 | INFO     | [job] validate thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,304 | INFO     | [payload] failed_post thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,420 | INFO     | [data] control thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,550 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,595 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,596 | INFO     | [job] job monitor thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,658 | INFO     | [data] copytool_out thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,801 | INFO     | [payload] control thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,813 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,893 | INFO     | [job] control thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:39,928 | INFO     | [payload] validate_post thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:40,047 | INFO     | [job] queue monitor thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:41,869 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 22:01:46] 2025-05-26 18:32:42,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492930492224)>', '<ExcThread(monitor, started 140492121560832)>']
[2025-05-26 22:01:46] 2025-05-26 18:32:43,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 22:01:46] 2025-05-26 18:32:43,104 | INFO     | [monitor] control thread has ended
[2025-05-26 22:01:46] 2025-05-26 18:32:47,666 | INFO     | all workflow threads have been joined
[2025-05-26 22:01:46] 2025-05-26 18:32:47,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 22:01:46] 2025-05-26 18:32:47,666 | INFO     | traces error code: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:47,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 22:01:46] 2025-05-26 18:32:47,908 [wrapper] ==== pilot stdout END ====
[2025-05-26 22:01:46] 2025-05-26 18:32:47,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 22:01:46] 2025-05-26 18:32:48,087 [wrapper] pilotpid: 11703
[2025-05-26 22:01:46] 2025-05-26 18:32:48,178 [wrapper] Pilot exit status: 0
[2025-05-26 22:01:46] 2025-05-26 18:32:48,591 [wrapper] pandaids: 6665743988
[2025-05-26 22:01:46] 2025-05-26 18:32:49,364 [wrapper] cleanup supervisor_pilot  7274 11704
[2025-05-26 22:01:46] 2025-05-26 18:32:49,392 [wrapper] Test setup, not cleaning
[2025-05-26 22:01:46] 2025-05-26 18:32:49,464 [wrapper] apfmon messages muted
[2025-05-26 22:01:46] 2025-05-26 18:32:49,479 [wrapper] ==== wrapper stdout END ====
[2025-05-26 22:01:46] 2025-05-26 18:32:49,543 [wrapper] ==== wrapper stderr END ====
[2025-05-26 22:01:46]  *** Error codes and diagnostics ***
[2025-05-26 22:01:46]     "exeErrorCode": 0,
[2025-05-26 22:01:46]     "exeErrorDiag": "",
[2025-05-26 22:01:46]     "pilotErrorCode": 0,
[2025-05-26 22:01:46]     "pilotErrorDiag": "",
[2025-05-26 22:01:46]  *** Listing of results directory ***
[2025-05-26 22:01:46] total 417688
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc    495897 May 25 22:46 pilot3.tar.gz
[2025-05-26 22:01:46] -rwx------. 1 boinc boinc     37140 May 25 22:50 runpilot2-wrapper.sh
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc      5111 May 25 22:50 queuedata.json
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc       100 May 26 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 22:01:46] -rwxr-xr-x. 1 boinc boinc      7986 May 26 15:06 run_atlas
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc       105 May 26 15:06 job.xml
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc 222594790 May 26 15:06 EVNT.44871834._001620.pool.root.1
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc     15093 May 26 15:06 start_atlas.sh
[2025-05-26 22:01:46] drwxrwx--x. 2 boinc boinc        68 May 26 15:06 shared
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc    508873 May 26 15:06 input.tar.gz
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc      6371 May 26 15:06 init_data.xml
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc         0 May 26 15:06 boinc_lockfile
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc      2559 May 26 15:31 pandaJob.out
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc    990445 May 26 15:31 agis_schedconf.cvmfs.json
[2025-05-26 22:01:46] drwx------. 4 boinc boinc      4096 May 26 15:31 pilot3
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc 197379030 May 26 20:29 HITS.44871837._040608.pool.root.1
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc       531 May 26 20:30 boinc_task_state.xml
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc      1020 May 26 20:30 memory_monitor_summary.json
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc   1603667 May 26 20:31 agis_ddmendpoints.agis.ALL.json
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc    411521 May 26 20:31 log.44871837._040608.job.log.tgz.1
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc        95 May 26 20:31 pilot_heartbeat.json
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc      7684 May 26 20:32 heartbeat.json
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc      4416 May 26 20:32 pilotlog.txt
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc   1543204 May 26 20:32 log.44871837._040608.job.log.1
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc       357 May 26 20:32 output.list
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc       620 May 26 20:32 runtime_log
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc   1976320 May 26 20:32 result.tar.gz
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc      8659 May 26 20:32 runtime_log.err
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc       657 May 26 20:32 0o4LDmfTXd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmR7OKDmaaeiZm.diag
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc      8192 May 26 22:01 boinc_mmap_file
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc        28 May 26 22:01 wrapper_checkpoint.txt
[2025-05-26 22:01:46] -rw-r--r--. 1 boinc boinc     20494 May 26 22:01 stderr.txt
[2025-05-26 22:01:46] HITS file was successfully produced:
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc 197379030 May 26 20:29 shared/HITS.pool.root.1
[2025-05-26 22:01:46]  *** Contents of shared directory: ***
[2025-05-26 22:01:46] total 412584
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc 222594790 May 26 15:06 ATLAS.root_0
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc     15093 May 26 15:06 start_atlas.sh
[2025-05-26 22:01:46] -rw-r--r--. 2 boinc boinc    508873 May 26 15:06 input.tar.gz
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc 197379030 May 26 20:29 HITS.pool.root.1
[2025-05-26 22:01:46] -rw-------. 1 boinc boinc   1976320 May 26 20:32 result.tar.gz
22:01:48 (25489): run_atlas exited; CPU time 68670.736769
22:01:48 (25489): called boinc_finish(0)

</stderr_txt>
]]>

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