Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:12 (24475): wrapper (7.7.26015): starting
10:02:12 (24475): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 10:02:12] Arguments: --nthreads 8
[2025-05-26 10:02:12] Threads: 8
[2025-05-26 10:02:12] Checking for CVMFS
[2025-05-26 10:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 10:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 10:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 10:02:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 10:02:13] 2.11.2.0 9859 20000 89052 146429 1 276 23741801 25165824 2473 130560 0 11034439 99.789 13100281 1833 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 10:02:13] CVMFS is ok
[2025-05-26 10:02:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 10:02:13] Checking for apptainer binary...
[2025-05-26 10:02:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 10:02:13] Running /usr/bin/apptainer --version
[2025-05-26 10:02:13] apptainer version 1.3.2-1.el7
[2025-05-26 10:02:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 10:02:14] cg-vwn461.simple-grid.lan
[2025-05-26 10:02:14] apptainer works
[2025-05-26 10:02:14] Set ATHENA_PROC_NUMBER=8
[2025-05-26 10:02:14] Set ATHENA_CORE_NUMBER=8
[2025-05-26 10:02:14] Starting ATLAS job with PandaID=6665738391
[2025-05-26 10:02:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 15:03:47]  *** The last 200 lines of the pilot log: ***
[2025-05-26 15:03:47] 2025-05-26 13:03:27,252 | INFO     | -- intersect: -2311666487.4285192
[2025-05-26 15:03:47] 2025-05-26 13:03:27,252 | INFO     | intersect: -2311666487.4285192
[2025-05-26 15:03:47] 2025-05-26 13:03:27,252 | INFO     | chi2: 0.02271407217266604
[2025-05-26 15:03:47] 2025-05-26 13:03:27,252 | INFO     | current chi2=0.02271407217266604 (change=40.94844819236248 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,253 | INFO     | sum of square deviations: 6806862510.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,255 | INFO     | sum of deviations: 11277265596.499998
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | mean x: 1748256022.5
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | mean y: 2501112.532142857
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | -- intersect: -2893921059.569755
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | intersect: -2893921059.569755
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | chi2: 0.004287604311009405
[2025-05-26 15:03:47] 2025-05-26 13:03:27,256 | INFO     | current chi2=0.004287604311009405 (change=81.12357714452858 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,257 | INFO     | sum of square deviations: 6448679050.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,259 | INFO     | sum of deviations: 8538556435.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | mean x: 1748256175.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | mean y: 2502277.978181818
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | -- intersect: -2312325905.799197
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | intersect: -2312325905.799197
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | chi2: 0.0020815987331711957
[2025-05-26 15:03:47] 2025-05-26 13:03:27,260 | INFO     | current chi2=0.0020815987331711957 (change=51.4507733881549 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,261 | INFO     | sum of square deviations: 6103286527.5
[2025-05-26 15:03:47] 2025-05-26 13:03:27,263 | INFO     | sum of deviations: 6398258523.999999
[2025-05-26 15:03:47] 2025-05-26 13:03:27,263 | INFO     | mean x: 1748256327.5
[2025-05-26 15:03:47] 2025-05-26 13:03:27,263 | INFO     | mean y: 2503221.962962963
[2025-05-26 15:03:47] 2025-05-26 13:03:27,263 | INFO     | -- intersect: -1830246379.282726
[2025-05-26 15:03:47] 2025-05-26 13:03:27,264 | INFO     | intersect: -1830246379.282726
[2025-05-26 15:03:47] 2025-05-26 13:03:27,264 | INFO     | chi2: 0.0006584726189286825
[2025-05-26 15:03:47] 2025-05-26 13:03:27,264 | INFO     | current chi2=0.0006584726189286825 (change=68.36697638043154 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,265 | INFO     | sum of square deviations: 5770452380.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,267 | INFO     | sum of deviations: 5238412026.999999
[2025-05-26 15:03:47] 2025-05-26 13:03:27,267 | INFO     | mean x: 1748256480.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,267 | INFO     | mean y: 2503752.271698113
[2025-05-26 15:03:47] 2025-05-26 13:03:27,267 | INFO     | -- intersect: -1584562073.4257812
[2025-05-26 15:03:47] 2025-05-26 13:03:27,267 | INFO     | intersect: -1584562073.4257812
[2025-05-26 15:03:47] 2025-05-26 13:03:27,268 | INFO     | chi2: 0.0002930672994376352
[2025-05-26 15:03:47] 2025-05-26 13:03:27,268 | INFO     | current chi2=0.0002930672994376352 (change=55.4928646973282 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,268 | INFO     | sum of square deviations: 5449944045.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,270 | INFO     | sum of deviations: 4601771588.5
[2025-05-26 15:03:47] 2025-05-26 13:03:27,270 | INFO     | mean x: 1748256632.5
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | mean y: 2504054.8884615386
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | -- intersect: -1473672146.998614
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | intersect: -1473672146.998614
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | chi2: 0.0002270637786611658
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | current chi2=0.0002270637786611658 (change=22.521625886996986 %)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,271 | INFO     | left removable region: 70
[2025-05-26 15:03:47] 2025-05-26 13:03:27,272 | INFO     | sum of square deviations: 3256879670.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,273 | INFO     | sum of deviations: 3044300038.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,273 | INFO     | mean x: 1748257517.0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,273 | INFO     | mean y: 2504534.9315068494
[2025-05-26 15:03:47] 2025-05-26 13:03:27,274 | INFO     | -- intersect: -1631642552.0675304
[2025-05-26 15:03:47] 2025-05-26 13:03:27,274 | INFO     | intersect: -1631642552.0675304
[2025-05-26 15:03:47] 2025-05-26 13:03:27,274 | INFO     | chi2: 0.000185585345685007
[2025-05-26 15:03:47] 2025-05-26 13:03:27,274 | INFO     | -- intersect: -1631642552.0675304
[2025-05-26 15:03:47] 2025-05-26 13:03:27,274 | INFO     | current memory leak: 0.93 B/s (using 219 data points, chi2=0.00)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,275 | INFO     | ..............................
[2025-05-26 15:03:47] 2025-05-26 13:03:27,275 | INFO     | . Timing measurements:
[2025-05-26 15:03:47] 2025-05-26 13:03:27,275 | INFO     | . get job = 0 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,275 | INFO     | . initial setup = 2 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | . payload setup = 10 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | . stage-in = 0 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | . payload execution = 18009 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | . stage-out = 1 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | . log creation = 0 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,276 | INFO     | ..............................
[2025-05-26 15:03:47] 2025-05-26 13:03:27,382 | INFO     | 
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | job summary report
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | --------------------------------------------------
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | PanDA job id: 6665738391
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | task id: 44871837
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | errors: (none)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | pilot state: finished 
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | transexitcode: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | exeerrorcode: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,383 | INFO     | exeerrordiag: 
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | exitcode: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | exitmsg: OK
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | cpuconsumptiontime: 68062 s
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | nevents: 400
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | neventsw: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | pid: 2374
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | pgrp: 2374
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | corecount: 8
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | event service: False
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | sizes: {0: 2393569, 1: 2393768, 8: 2393974, 12: 2394002, 18024: 2425692, 18026: 2446128, 18029: 2446312, 18038: 2446482}
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | --------------------------------------------------
[2025-05-26 15:03:47] 2025-05-26 13:03:27,384 | INFO     | 
[2025-05-26 15:03:47] 2025-05-26 13:03:27,385 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-05-26 15:03:47] 2025-05-26 13:03:27,441 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,441 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | job 6665738391 has completed (purged errors)
[2025-05-26 15:03:47] 2025-05-26 13:03:27,443 | INFO     | overall cleanup function is called
[2025-05-26 15:03:47] 2025-05-26 13:03:28,452 | INFO     | --- collectZombieJob: --- 10, [2374]
[2025-05-26 15:03:47] 2025-05-26 13:03:28,452 | INFO     | zombie collector waiting for pid 2374
[2025-05-26 15:03:47] 2025-05-26 13:03:28,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 15:03:47] 2025-05-26 13:03:28,452 | INFO     | collected zombie processes
[2025-05-26 15:03:47] 2025-05-26 13:03:28,452 | INFO     | will attempt to kill all subprocesses of pid=2374
[2025-05-26 15:03:47] 2025-05-26 13:03:28,559 | INFO     | process IDs to be killed: [2374] (in reverse order)
[2025-05-26 15:03:47] 2025-05-26 13:03:28,646 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 15:03:47] 2025-05-26 13:03:28,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 15:03:47] 2025-05-26 13:03:28,649 | INFO     | did not find any defunct processes belonging to 2374
[2025-05-26 15:03:47] 2025-05-26 13:03:28,651 | INFO     | did not find any defunct processes belonging to 2374
[2025-05-26 15:03:47] 2025-05-26 13:03:28,652 | INFO     | ready for new job
[2025-05-26 15:03:47] 2025-05-26 13:03:28,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 15:03:47] 2025-05-26 13:03:28,654 | INFO     | **************************************
[2025-05-26 15:03:47] 2025-05-26 13:03:28,654 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 15:03:47] 2025-05-26 13:03:28,655 | INFO     | **************************************
[2025-05-26 15:03:47] 2025-05-26 13:03:28,655 | INFO     | 
[2025-05-26 15:03:47] 2025-05-26 13:03:28,655 | INFO     | pilot is running in a VM
[2025-05-26 15:03:47] 2025-05-26 13:03:28,655 | INFO     | architecture information:
[2025-05-26 15:03:47] 2025-05-26 13:03:28,655 | INFO     | executing command: cat /etc/os-release
[2025-05-26 15:03:47] 2025-05-26 13:03:28,673 | INFO     | cat /etc/os-release:
[2025-05-26 15:03:47] NAME="CentOS Linux"
[2025-05-26 15:03:47] VERSION="7 (Core)"
[2025-05-26 15:03:47] ID="centos"
[2025-05-26 15:03:47] ID_LIKE="rhel fedora"
[2025-05-26 15:03:47] VERSION_ID="7"
[2025-05-26 15:03:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 15:03:47] ANSI_COLOR="0;31"
[2025-05-26 15:03:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 15:03:47] HOME_URL="https://www.centos.org/"
[2025-05-26 15:03:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 15:03:47] 
[2025-05-26 15:03:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 15:03:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 15:03:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 15:03:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 15:03:47] 
[2025-05-26 15:03:47] 2025-05-26 13:03:28,673 | INFO     | **************************************
[2025-05-26 15:03:47] 2025-05-26 13:03:29,176 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-05-26 15:03:47] 2025-05-26 13:03:29,221 | INFO     | sufficient remaining disk space (492234080256 B)
[2025-05-26 15:03:47] 2025-05-26 13:03:29,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 15:03:47] 2025-05-26 13:03:29,222 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 15:03:47] 2025-05-26 13:03:29,222 | INFO     | update_server=False
[2025-05-26 15:03:47] 2025-05-26 13:03:29,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 15:03:47] 2025-05-26 13:03:29,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 15:03:47] 2025-05-26 13:03:29,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 15:03:47] 2025-05-26 13:03:29,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:03:47] 2025-05-26 13:03:29,581 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 15:03:47] 2025-05-26 13:03:29,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 15:03:47] 2025-05-26 13:03:29,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 15:03:47] 2025-05-26 13:03:29,640 | INFO     | all job control threads have been joined
[2025-05-26 15:03:47] 2025-05-26 13:03:29,683 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-26 15:03:47] 2025-05-26 13:03:29,683 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-26 15:03:47] 2025-05-26 13:03:29,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:03:47] 2025-05-26 13:03:29,683 | INFO     | will abort loop
[2025-05-26 15:03:47] 2025-05-26 13:03:29,874 | INFO     | all data control threads have been joined
[2025-05-26 15:03:47] 2025-05-26 13:03:30,228 | INFO     | [job] retrieve thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,234 | INFO     | [job] queue monitor thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,369 | INFO     | all payload control threads have been joined
[2025-05-26 15:03:47] 2025-05-26 13:03:30,502 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,646 | INFO     | [job] control thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,670 | INFO     | [payload] failed_post thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,671 | INFO     | [payload] validate_post thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,689 | INFO     | [job] job monitor thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,880 | INFO     | [data] control thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:30,990 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:31,052 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:31,230 | INFO     | [data] copytool_out thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:31,374 | INFO     | [payload] control thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:31,679 | INFO     | [data] copytool_in thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:31,715 | INFO     | [job] validate thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:33,235 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:39,778 | INFO     | job.realtimelogging is not enabled
[2025-05-26 15:03:47] 2025-05-26 13:03:40,782 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 15:03:47] 2025-05-26 13:03:42,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680161576768)>', '<ExcThread(monitor, started 140679506294528)>']
[2025-05-26 15:03:47] 2025-05-26 13:03:42,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 15:03:47] 2025-05-26 13:03:42,638 | INFO     | [monitor] control thread has ended
[2025-05-26 15:03:47] 2025-05-26 13:03:47,328 | INFO     | all workflow threads have been joined
[2025-05-26 15:03:47] 2025-05-26 13:03:47,328 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 15:03:47] 2025-05-26 13:03:47,328 | INFO     | traces error code: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:47,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 15:03:47] 2025-05-26 13:03:47,475 [wrapper] ==== pilot stdout END ====
[2025-05-26 15:03:47] 2025-05-26 13:03:47,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 15:03:47] 2025-05-26 13:03:47,492 [wrapper] pilotpid: 28180
[2025-05-26 15:03:47] 2025-05-26 13:03:47,501 [wrapper] Pilot exit status: 0
[2025-05-26 15:03:47] 2025-05-26 13:03:47,543 [wrapper] pandaids: 6665738391
[2025-05-26 15:03:47] 2025-05-26 13:03:47,595 [wrapper] cleanup supervisor_pilot  8119 28181
[2025-05-26 15:03:47] 2025-05-26 13:03:47,612 [wrapper] Test setup, not cleaning
[2025-05-26 15:03:47] 2025-05-26 13:03:47,616 [wrapper] apfmon messages muted
[2025-05-26 15:03:47] 2025-05-26 13:03:47,626 [wrapper] ==== wrapper stdout END ====
[2025-05-26 15:03:47] 2025-05-26 13:03:47,631 [wrapper] ==== wrapper stderr END ====
[2025-05-26 15:03:47]  *** Error codes and diagnostics ***
[2025-05-26 15:03:47]     "exeErrorCode": 0,
[2025-05-26 15:03:47]     "exeErrorDiag": "",
[2025-05-26 15:03:47]     "pilotErrorCode": 0,
[2025-05-26 15:03:47]     "pilotErrorDiag": "",
[2025-05-26 15:03:47]  *** Listing of results directory ***
[2025-05-26 15:03:47] total 418636
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc    495897 May 25 19:46 pilot3.tar.gz
[2025-05-26 15:03:47] -rwx------. 1 boinc boinc     37140 May 25 20:29 runpilot2-wrapper.sh
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc      5111 May 25 20:29 queuedata.json
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc       100 May 26 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 15:03:47] -rwxr-xr-x. 1 boinc boinc      7986 May 26 10:02 run_atlas
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc       105 May 26 10:02 job.xml
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc 224804715 May 26 10:02 EVNT.44871834._001548.pool.root.1
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc     15093 May 26 10:02 start_atlas.sh
[2025-05-26 15:03:47] drwxrwx--x. 2 boinc boinc        68 May 26 10:02 shared
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc    508868 May 26 10:02 input.tar.gz
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc      6373 May 26 10:02 init_data.xml
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc         0 May 26 10:02 boinc_lockfile
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc      2558 May 26 10:02 pandaJob.out
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc    990811 May 26 10:02 agis_schedconf.cvmfs.json
[2025-05-26 15:03:47] drwx------. 4 boinc boinc      4096 May 26 10:02 pilot3
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc 196082217 May 26 15:02 HITS.44871837._038800.pool.root.1
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc       531 May 26 15:02 boinc_task_state.xml
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc        95 May 26 15:02 pilot_heartbeat.json
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc      1018 May 26 15:03 memory_monitor_summary.json
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc   1603667 May 26 15:03 agis_ddmendpoints.agis.ALL.json
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc    411851 May 26 15:03 log.44871837._038800.job.log.tgz.1
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc      7687 May 26 15:03 heartbeat.json
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc      8192 May 26 15:03 boinc_mmap_file
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc        28 May 26 15:03 wrapper_checkpoint.txt
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc      4675 May 26 15:03 pilotlog.txt
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc   1573396 May 26 15:03 log.44871837._038800.job.log.1
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc       357 May 26 15:03 output.list
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc       620 May 26 15:03 runtime_log
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc   2007040 May 26 15:03 result.tar.gz
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc       657 May 26 15:03 xhhMDmnHVd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFqUKDmWKwy6n.diag
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc      8673 May 26 15:03 runtime_log.err
[2025-05-26 15:03:47] -rw-r--r--. 1 boinc boinc     20497 May 26 15:03 stderr.txt
[2025-05-26 15:03:47] HITS file was successfully produced:
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc 196082217 May 26 15:02 shared/HITS.pool.root.1
[2025-05-26 15:03:47]  *** Contents of shared directory: ***
[2025-05-26 15:03:47] total 413500
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc 224804715 May 26 10:02 ATLAS.root_0
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc     15093 May 26 10:02 start_atlas.sh
[2025-05-26 15:03:47] -rw-r--r--. 2 boinc boinc    508868 May 26 10:02 input.tar.gz
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc 196082217 May 26 15:02 HITS.pool.root.1
[2025-05-26 15:03:47] -rw-------. 1 boinc boinc   2007040 May 26 15:03 result.tar.gz
15:03:49 (24475): run_atlas exited; CPU time 68289.417747
15:03:49 (24475): called boinc_finish(0)

</stderr_txt>
]]>

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