Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:12:17 (3612765): wrapper (7.7.26015): starting
18:12:17 (3612765): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 18:12:17] Arguments: --nthreads 8
[2025-05-25 18:12:17] Threads: 8
[2025-05-25 18:12:17] Checking for CVMFS
[2025-05-25 18:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 18:12:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 18:12:18] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 18:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 18:12:18] 2.12.6.0 4868 23497 350312 146416 1 155 26480355 32935937 29574 16776704 0 202597307 99.672 175876344 21922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 18:12:18] CVMFS is ok
[2025-05-25 18:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 18:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 18:12:18] Further information can be found at the LHC@home message board.
[2025-05-25 18:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 18:12:18] Checking for apptainer binary...
[2025-05-25 18:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 18:12:18] Running /usr/bin/apptainer --version
[2025-05-25 18:12:18] apptainer version 1.4.1-1.el9
[2025-05-25 18:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 18:12:18] c7-3-34.aglt2.org
[2025-05-25 18:12:18] apptainer works
[2025-05-25 18:12:18] Set ATHENA_PROC_NUMBER=8
[2025-05-25 18:12:18] Set ATHENA_CORE_NUMBER=8
[2025-05-25 18:12:19] Starting ATLAS job with PandaID=6665728177
[2025-05-25 18:12:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 21:47:32]  *** The last 200 lines of the pilot log: ***
[2025-05-25 21:47:32] 2025-05-26 01:47:13,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 21:47:32] 2025-05-26 01:47:15,897 | INFO     | monitor loop #779: job 0:6665728177 is in state 'finished'
[2025-05-25 21:47:32] 2025-05-26 01:47:15,898 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 21:47:32] 2025-05-26 01:47:17,470 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6665728177/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,471 | INFO     | extracted standard info from prmon json
[2025-05-25 21:47:32] 2025-05-26 01:47:17,471 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 21:47:32] 2025-05-26 01:47:17,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 21:47:32] 2025-05-26 01:47:17,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 21:47:32] 2025-05-26 01:47:17,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 21:47:32] 2025-05-26 01:47:17,475 | INFO     | fitting pss+swap vs Time
[2025-05-25 21:47:32] 2025-05-26 01:47:17,475 | INFO     | sum of square deviations: 2871598948.328571
[2025-05-25 21:47:32] 2025-05-26 01:47:17,476 | INFO     | sum of deviations: 33478098880.300014
[2025-05-25 21:47:32] 2025-05-26 01:47:17,476 | INFO     | mean x: 1748217625.5285714
[2025-05-25 21:47:32] 2025-05-26 01:47:17,476 | INFO     | mean y: 2152506.7
[2025-05-25 21:47:32] 2025-05-26 01:47:17,476 | INFO     | -- intersect: -20379176357.414104
[2025-05-25 21:47:32] 2025-05-26 01:47:17,477 | INFO     | intersect: -20379176357.414104
[2025-05-25 21:47:32] 2025-05-26 01:47:17,477 | INFO     | chi2: 3.135799710366279
[2025-05-25 21:47:32] 2025-05-26 01:47:17,477 | INFO     | sum of square deviations: 2671327255.8243876
[2025-05-25 21:47:32] 2025-05-26 01:47:17,478 | INFO     | sum of deviations: 44059580777.71223
[2025-05-25 21:47:32] 2025-05-26 01:47:17,478 | INFO     | mean x: 1748217473.0292683
[2025-05-25 21:47:32] 2025-05-26 01:47:17,478 | INFO     | mean y: 2160377.2146341465
[2025-05-25 21:47:32] 2025-05-26 01:47:17,478 | INFO     | -- intersect: -28832093756.94251
[2025-05-25 21:47:32] 2025-05-26 01:47:17,478 | INFO     | intersect: -28832093756.94251
[2025-05-25 21:47:32] 2025-05-26 01:47:17,479 | INFO     | chi2: 2.3772273306183296
[2025-05-25 21:47:32] 2025-05-26 01:47:17,479 | INFO     | current chi2=2.3772273306183296 (change=24.190715281982854 %)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,479 | INFO     | right removable region: 204
[2025-05-25 21:47:32] 2025-05-26 01:47:17,479 | INFO     | sum of square deviations: 2671323595.8243876
[2025-05-25 21:47:32] 2025-05-26 01:47:17,480 | INFO     | sum of deviations: -8511599875.829269
[2025-05-25 21:47:32] 2025-05-26 01:47:17,480 | INFO     | mean x: 1748217778.0292683
[2025-05-25 21:47:32] 2025-05-26 01:47:17,480 | INFO     | mean y: 2184346.8048780486
[2025-05-25 21:47:32] 2025-05-26 01:47:17,480 | INFO     | -- intersect: 5572505458.652182
[2025-05-25 21:47:32] 2025-05-26 01:47:17,480 | INFO     | intersect: 5572505458.652182
[2025-05-25 21:47:32] 2025-05-26 01:47:17,481 | INFO     | chi2: 0.9818085218185942
[2025-05-25 21:47:32] 2025-05-26 01:47:17,481 | INFO     | current chi2=0.9818085218185942 (change=68.69033061732398 %)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,481 | INFO     | sum of square deviations: 2480583305.8200054
[2025-05-25 21:47:32] 2025-05-26 01:47:17,482 | INFO     | sum of deviations: -15379849878.51
[2025-05-25 21:47:32] 2025-05-26 01:47:17,482 | INFO     | mean x: 1748217930.53
[2025-05-25 21:47:32] 2025-05-26 01:47:17,482 | INFO     | mean y: 2189753.835
[2025-05-25 21:47:32] 2025-05-26 01:47:17,482 | INFO     | -- intersect: 10841305401.911448
[2025-05-25 21:47:32] 2025-05-26 01:47:17,482 | INFO     | intersect: 10841305401.911448
[2025-05-25 21:47:32] 2025-05-26 01:47:17,483 | INFO     | chi2: 0.8466133513793973
[2025-05-25 21:47:32] 2025-05-26 01:47:17,483 | INFO     | current chi2=0.8466133513793973 (change=13.770013952290439 %)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,483 | INFO     | left removable region: 20
[2025-05-25 21:47:32] 2025-05-26 01:47:17,483 | INFO     | sum of square deviations: 1931585501.8043506
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | sum of deviations: -2052489143.521741
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | mean x: 1748218052.5326087
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | mean y: 2196738.086956522
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | -- intersect: 1859840922.090232
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | intersect: 1859840922.090232
[2025-05-25 21:47:32] 2025-05-26 01:47:17,484 | INFO     | chi2: 0.05280529407396843
[2025-05-25 21:47:32] 2025-05-26 01:47:17,485 | INFO     | -- intersect: 1859840922.090232
[2025-05-25 21:47:32] 2025-05-26 01:47:17,485 | INFO     | current memory leak: -1.06 B/s (using 184 data points, chi2=0.05)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,485 | INFO     | ..............................
[2025-05-25 21:47:32] 2025-05-26 01:47:17,485 | INFO     | . Timing measurements:
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . get job = 0 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . initial setup = 4 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . payload setup = 26 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . stage-in = 0 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . payload execution = 12778 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . stage-out = 2 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | . log creation = 0 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,486 | INFO     | ..............................
[2025-05-25 21:47:32] 2025-05-26 01:47:17,628 | INFO     | 
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | job summary report
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | --------------------------------------------------
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | PanDA job id: 6665728177
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | task id: 44871837
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | errors: (none)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 21:47:32] 2025-05-26 01:47:17,634 | INFO     | pilot state: finished 
[2025-05-25 21:47:32] 2025-05-26 01:47:17,634 | INFO     | transexitcode: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | exeerrorcode: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | exeerrordiag: 
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | exitcode: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | exitmsg: OK
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | cpuconsumptiontime: 41132 s
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | nevents: 400
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | neventsw: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | pid: 3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | pgrp: 3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | corecount: 8
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | event service: False
[2025-05-25 21:47:32] 2025-05-26 01:47:17,635 | INFO     | sizes: {0: 2393514, 1: 2393769, 2: 2393769, 12: 2393797, 16: 2394031, 23: 2394059, 12808: 2423753, 12811: 2432694, 12814: 2432750, 12828: 2432920}
[2025-05-25 21:47:32] 2025-05-26 01:47:17,636 | INFO     | --------------------------------------------------
[2025-05-25 21:47:32] 2025-05-26 01:47:17,636 | INFO     | 
[2025-05-25 21:47:32] 2025-05-26 01:47:17,636 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-25 21:47:32] 2025-05-26 01:47:17,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 21:47:32] 2025-05-26 01:47:17,745 | INFO     | job 6665728177 has completed (purged errors)
[2025-05-25 21:47:32] 2025-05-26 01:47:17,745 | INFO     | overall cleanup function is called
[2025-05-25 21:47:32] 2025-05-26 01:47:18,755 | INFO     | --- collectZombieJob: --- 10, [3634709]
[2025-05-25 21:47:32] 2025-05-26 01:47:18,756 | INFO     | zombie collector waiting for pid 3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:18,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 21:47:32] 2025-05-26 01:47:18,756 | INFO     | collected zombie processes
[2025-05-25 21:47:32] 2025-05-26 01:47:18,756 | INFO     | will attempt to kill all subprocesses of pid=3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:19,588 | INFO     | PID=3623374 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-25 21:47:32] 2025-05-26 01:47:19,588 | INFO     | .. there are 38 such processes running
[2025-05-25 21:47:32] 2025-05-26 01:47:19,666 | INFO     | process IDs to be killed: [3634709] (in reverse order)
[2025-05-25 21:47:32] 2025-05-26 01:47:19,869 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 21:47:32] 2025-05-26 01:47:19,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 21:47:32] 2025-05-26 01:47:19,903 | INFO     | did not find any defunct processes belonging to 3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:19,925 | INFO     | did not find any defunct processes belonging to 3634709
[2025-05-25 21:47:32] 2025-05-26 01:47:19,925 | INFO     | ready for new job
[2025-05-25 21:47:32] 2025-05-26 01:47:19,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 21:47:32] 2025-05-26 01:47:19,927 | INFO     | **************************************
[2025-05-25 21:47:32] 2025-05-26 01:47:19,927 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 21:47:32] 2025-05-26 01:47:19,927 | INFO     | **************************************
[2025-05-25 21:47:32] 2025-05-26 01:47:19,927 | INFO     | 
[2025-05-25 21:47:32] 2025-05-26 01:47:19,934 | INFO     | architecture information:
[2025-05-25 21:47:32] 2025-05-26 01:47:19,935 | INFO     | executing command: cat /etc/os-release
[2025-05-25 21:47:32] 2025-05-26 01:47:19,959 | INFO     | cat /etc/os-release:
[2025-05-25 21:47:32] NAME="CentOS Linux"
[2025-05-25 21:47:32] VERSION="7 (Core)"
[2025-05-25 21:47:32] ID="centos"
[2025-05-25 21:47:32] ID_LIKE="rhel fedora"
[2025-05-25 21:47:32] VERSION_ID="7"
[2025-05-25 21:47:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 21:47:32] ANSI_COLOR="0;31"
[2025-05-25 21:47:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 21:47:32] HOME_URL="https://www.centos.org/"
[2025-05-25 21:47:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 21:47:32] 
[2025-05-25 21:47:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 21:47:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 21:47:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 21:47:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 21:47:32] 
[2025-05-25 21:47:32] 2025-05-26 01:47:19,959 | INFO     | **************************************
[2025-05-25 21:47:32] 2025-05-26 01:47:20,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-25 21:47:32] 2025-05-26 01:47:20,510 | INFO     | sufficient remaining disk space (74032611328 B)
[2025-05-25 21:47:32] 2025-05-26 01:47:20,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 21:47:32] 2025-05-26 01:47:20,510 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 21:47:32] 2025-05-26 01:47:20,510 | INFO     | update_server=False
[2025-05-25 21:47:32] 2025-05-26 01:47:20,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 21:47:32] 2025-05-26 01:47:20,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 21:47:32] 2025-05-26 01:47:20,511 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 21:47:32] 2025-05-26 01:47:20,511 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 21:47:32] 2025-05-26 01:47:20,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 21:47:32] 2025-05-26 01:47:20,511 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 21:47:32] 2025-05-26 01:47:20,918 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 21:47:32] 2025-05-26 01:47:20,919 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 21:47:32] 2025-05-26 01:47:20,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 21:47:32] 2025-05-26 01:47:20,919 | INFO     | will abort loop
[2025-05-25 21:47:32] 2025-05-26 01:47:21,293 | INFO     | all payload control threads have been joined
[2025-05-25 21:47:32] 2025-05-26 01:47:21,315 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 21:47:32] 2025-05-26 01:47:21,516 | INFO     | [job] retrieve thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,537 | INFO     | all data control threads have been joined
[2025-05-25 21:47:32] 2025-05-26 01:47:21,552 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,634 | INFO     | all job control threads have been joined
[2025-05-25 21:47:32] 2025-05-26 01:47:21,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,679 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,790 | INFO     | [payload] failed_post thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,799 | INFO     | [data] copytool_in thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:21,924 | INFO     | [job] job monitor thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:22,300 | INFO     | [payload] control thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:22,453 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:22,543 | INFO     | [data] control thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:22,641 | INFO     | [job] control thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:22,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 21:47:32] 2025-05-26 01:47:22,664 | INFO     | [job] validate thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:23,096 | INFO     | [payload] validate_post thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:23,321 | INFO     | [data] copytool_out thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:23,647 | INFO     | [job] queue monitor thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:24,520 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 21:47:32] 2025-05-26 01:47:26,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824959371072)>', '<ExcThread(monitor, started 139824321255168)>']
[2025-05-25 21:47:32] 2025-05-26 01:47:26,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 21:47:32] 2025-05-26 01:47:26,548 | INFO     | [monitor] control thread has ended
[2025-05-25 21:47:32] 2025-05-26 01:47:31,279 | INFO     | all workflow threads have been joined
[2025-05-25 21:47:32] 2025-05-26 01:47:31,280 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 21:47:32] 2025-05-26 01:47:31,280 | INFO     | traces error code: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:31,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 21:47:32] 2025-05-26 01:47:31,477 [wrapper] ==== pilot stdout END ====
[2025-05-25 21:47:32] 2025-05-26 01:47:31,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 21:47:32] 2025-05-26 01:47:31,487 [wrapper] pilotpid: 3623374
[2025-05-25 21:47:32] 2025-05-26 01:47:31,497 [wrapper] Pilot exit status: 0
[2025-05-25 21:47:32] 2025-05-26 01:47:31,534 [wrapper] pandaids: 6665728177
[2025-05-25 21:47:32] 2025-05-26 01:47:31,735 [wrapper] cleanup supervisor_pilot 1582743 3623375
[2025-05-25 21:47:32] 2025-05-26 01:47:31,740 [wrapper] Test setup, not cleaning
[2025-05-25 21:47:32] 2025-05-26 01:47:31,743 [wrapper] apfmon messages muted
[2025-05-25 21:47:32] 2025-05-26 01:47:31,776 [wrapper] ==== wrapper stdout END ====
[2025-05-25 21:47:32] 2025-05-26 01:47:31,783 [wrapper] ==== wrapper stderr END ====
[2025-05-25 21:47:32]  *** Error codes and diagnostics ***
[2025-05-25 21:47:32]     "exeErrorCode": 0,
[2025-05-25 21:47:32]     "exeErrorDiag": "",
[2025-05-25 21:47:32]     "pilotErrorCode": 0,
[2025-05-25 21:47:32]     "pilotErrorDiag": "",
[2025-05-25 21:47:32]  *** Listing of results directory ***
[2025-05-25 21:47:32] total 417052
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas    495897 May 25 08:17 pilot3.tar.gz
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas      5111 May 25 08:33 queuedata.json
[2025-05-25 21:47:32] -rwx------. 1 boincer umatlas     37140 May 25 08:34 runpilot2-wrapper.sh
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas       100 May 25 18:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 21:47:32] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 18:12 run_atlas
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas       105 May 25 18:12 job.xml
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas 222695854 May 25 18:12 EVNT.44871834._001376.pool.root.1
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas     15093 May 25 18:12 start_atlas.sh
[2025-05-25 21:47:32] drwxrwx--x. 2 boincer umatlas      4096 May 25 18:12 shared
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas    508877 May 25 18:12 input.tar.gz
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas         0 May 25 18:12 boinc_lockfile
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas      2559 May 25 18:12 pandaJob.out
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas    990803 May 25 18:12 agis_schedconf.cvmfs.json
[2025-05-25 21:47:32] drwx------. 4 boincer umatlas      4096 May 25 18:12 pilot3
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas      6933 May 25 21:37 init_data.xml
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas        95 May 25 21:46 pilot_heartbeat.json
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas 197684047 May 25 21:46 HITS.44871837._034505.pool.root.1
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas       531 May 25 21:46 boinc_task_state.xml
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas      1049 May 25 21:46 memory_monitor_summary.json
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas   1596740 May 25 21:46 agis_ddmendpoints.agis.ALL.json
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas    375426 May 25 21:47 log.44871837._034505.job.log.tgz.1
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas      7717 May 25 21:47 heartbeat.json
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas        28 May 25 21:47 wrapper_checkpoint.txt
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas      8192 May 25 21:47 boinc_mmap_file
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas      4662 May 25 21:47 pilotlog.txt
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas   1047830 May 25 21:47 log.44871837._034505.job.log.1
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas       357 May 25 21:47 output.list
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas       620 May 25 21:47 runtime_log
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas   1443840 May 25 21:47 result.tar.gz
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas      8655 May 25 21:47 runtime_log.err
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas       660 May 25 21:47 ec0KDmVjPd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSBUKDmgkcAVo.diag
[2025-05-25 21:47:32] -rw-r--r--. 1 boincer umatlas     21242 May 25 21:47 stderr.txt
[2025-05-25 21:47:32] HITS file was successfully produced:
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas 197684047 May 25 21:46 shared/HITS.pool.root.1
[2025-05-25 21:47:32]  *** Contents of shared directory: ***
[2025-05-25 21:47:32] total 412468
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas 222695854 May 25 18:12 ATLAS.root_0
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas     15093 May 25 18:12 start_atlas.sh
[2025-05-25 21:47:32] -rw-r--r--. 2 boincer umatlas    508877 May 25 18:12 input.tar.gz
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas 197684047 May 25 21:46 HITS.pool.root.1
[2025-05-25 21:47:32] -rw-------. 1 boincer umatlas   1443840 May 25 21:47 result.tar.gz
21:47:33 (3612765): run_atlas exited; CPU time 41516.996947
21:47:33 (3612765): called boinc_finish(0)

</stderr_txt>
]]>

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