Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-25 17:48:57 (1504): Detected: vboxwrapper 26206
2025-05-25 17:48:57 (1504): Detected: BOINC client v8.0.2
2025-05-25 17:48:59 (1504): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2025-05-25 17:48:59 (1504): Successfully copied 'init_data.xml' to the shared directory.
2025-05-25 17:48:59 (1504): Create VM. (boinc_4a03598772603d26, slot#3)
2025-05-25 17:49:00 (1504): Setting Memory Size for VM. (4400MB)
2025-05-25 17:49:00 (1504): Setting CPU Count for VM. (4)
2025-05-25 17:49:01 (1504): Setting Chipset Options for VM.
2025-05-25 17:49:01 (1504): Setting Graphics Controller Options for VM.
2025-05-25 17:49:01 (1504): Setting Boot Options for VM.
2025-05-25 17:49:02 (1504): Setting Network Configuration for NAT.
2025-05-25 17:49:02 (1504): Enabling VM Network Access.
2025-05-25 17:49:02 (1504): Disabling USB Support for VM.
2025-05-25 17:49:02 (1504): Disabling COM Port Support for VM.
2025-05-25 17:49:03 (1504): Disabling LPT Port Support for VM.
2025-05-25 17:49:03 (1504): Disabling Audio Support for VM.
2025-05-25 17:49:03 (1504): Disabling Clipboard Support for VM.
2025-05-25 17:49:03 (1504): Disabling Drag and Drop Support for VM.
2025-05-25 17:49:04 (1504): Adding storage controller(s) to VM.
2025-05-25 17:49:04 (1504): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-25 17:49:07 (1504): Adding VirtualBox Guest Additions to VM.
2025-05-25 17:49:07 (1504): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-25 17:49:08 (1504): forwarding host port 50689 to guest port 80
2025-05-25 17:49:08 (1504): Enabling remote desktop for VM.
2025-05-25 17:49:08 (1504): Required extension pack not installed, remote desktop not enabled.
2025-05-25 17:49:08 (1504): Enabling shared directory for VM.
2025-05-25 17:49:09 (1504): Starting VM using VBoxManage interface. (boinc_4a03598772603d26, slot#3)
2025-05-25 17:49:20 (1504): Successfully started VM. (PID = '14772')
2025-05-25 17:49:20 (1504): Reporting VM Process ID to BOINC.
2025-05-25 17:49:20 (1504): Guest Log: BIOS: VirtualBox 7.0.18
2025-05-25 17:49:20 (1504): Guest Log: CPUID EDX: 0x178bfbff
2025-05-25 17:49:20 (1504): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-25 17:49:20 (1504): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-25 17:49:20 (1504): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-25 17:49:20 (1504): Detected: Web Application Enabled (http://localhost:50689)
2025-05-25 17:49:20 (1504): Preference change detected
2025-05-25 17:49:20 (1504): Setting CPU throttle for VM. (100%)
2025-05-25 17:49:20 (1504): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-25 17:49:22 (1504): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-25 17:49:22 (1504): Guest Log: BIOS: Booting from Hard Disk...
2025-05-25 17:49:25 (1504): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-25 17:49:25 (1504): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-25 17:49:25 (1504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-25 17:49:35 (1504): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-25 17:49:35 (1504): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-25 17:49:51 (1504): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000363 main     Log opened 2025-05-25T17:49:50.136010000Z
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000647 main     OS Product: Linux
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000791 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000879 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000969 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.000972 main     Process ID: 1306
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.001067 main     Package type: LINUX_64BITS_GENERIC
2025-05-25 17:49:51 (1504): Guest Log: 00:00:00.003389 main     5.2.32 r132073 started. Verbose level = 0
2025-05-25 17:49:51 (1504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-25 17:49:51 (1504): Guest Log: [INFO] Mounting shared directory
2025-05-25 17:49:51 (1504): Guest Log: [INFO] Checking for init_data.xml
2025-05-25 17:49:57 (1504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-25 17:49:57 (1504): Guest Log: [INFO] Detected branch: prod
2025-05-25 17:49:58 (1504): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-25 17:49:58 (1504): Guest Log: Copying input files
2025-05-25 17:50:01 (1504): Guest Log: 00:00:10.020891 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 605 819 000ns (GuestNow=1 748 209 800 748 647 000 ns GuestLast=1 748 195 390 142 828 000 ns fSetTimeLastLoop=true )
2025-05-25 17:50:02 (1504): Guest Log: Copied input files into RunAtlas.
2025-05-25 17:50:02 (1504): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-25 17:50:02 (1504): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-25 17:50:02 (1504): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-25 17:50:02 (1504): Guest Log: Further information can be found at the LHC@home message board.
2025-05-25 17:50:13 (1504): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-25 17:50:14 (1504): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-25 17:50:14 (1504): Guest Log: 2.6.3.0 1586 0 32172 146415 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-25 17:50:15 (1504): Guest Log: copied the webapp to /var/www
2025-05-25 17:50:15 (1504): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-25 17:50:15 (1504): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-25 17:50:16 (1504): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-25 17:50:16 (1504): Guest Log:  *** Starting ATLAS job. (PandaID=6665729794 taskID=44871837) ***
2025-05-25 19:33:34 (1504): Status Report: Elapsed Time: '6000.051300'
2025-05-25 19:33:34 (1504): Status Report: CPU Time: '20310.562500'
2025-05-25 21:18:35 (1504): Status Report: Elapsed Time: '12000.248034'
2025-05-25 21:18:35 (1504): Status Report: CPU Time: '45214.187500'
2025-05-25 23:03:03 (1504): Status Report: Elapsed Time: '18000.748442'
2025-05-25 23:03:03 (1504): Status Report: CPU Time: '70018.500000'
2025-05-26 00:47:37 (1504): Status Report: Elapsed Time: '24001.444942'
2025-05-26 00:47:37 (1504): Status Report: CPU Time: '94866.734375'
2025-05-26 02:31:41 (1504): Status Report: Elapsed Time: '30002.192461'
2025-05-26 02:31:41 (1504): Status Report: CPU Time: '119560.359375'
2025-05-26 04:17:07 (1504): Status Report: Elapsed Time: '36003.125530'
2025-05-26 04:17:13 (1504): Status Report: CPU Time: '144534.531250'
2025-05-26 06:03:14 (1504): Status Report: Elapsed Time: '42003.167330'
2025-05-26 06:03:14 (1504): Status Report: CPU Time: '169696.328125'
2025-05-26 07:08:18 (1504): Guest Log:  *** Job finished ***
2025-05-26 07:08:18 (1504): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:09,022 | INFO     | [data] copytool_out thread has finished
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:09,085 | INFO     | [job] control thread has finished
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:09,908 | INFO     | [data] queue_monitor thread has finished
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:10,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140236362614592)>', '<ExcThread(monitor, started 140235665020672)>']
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:10,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:10,873 | INFO     | [monitor] control thread has ended
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,417 | INFO     | all workflow threads have been joined
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,417 | INFO     | end of generic workflow (traces error code: 0)
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,418 | INFO     | traces error code: 0
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,637 [wrapper] ==== pilot stdout END ====
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,652 [wrapper] ==== wrapper stdout RESUME ====
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,668 [wrapper] pilotpid: 5918
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,685 [wrapper] Pilot exit status: 0
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,772 [wrapper] pandaids: 6665729794
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,873 [wrapper] cleanup supervisor_pilot 32549 5919
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,898 [wrapper] Test setup, not cleaning
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,915 [wrapper] apfmon messages muted
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,933 [wrapper] ==== wrapper stdout END ====
2025-05-26 07:08:18 (1504): Guest Log: 2025-05-26 11:08:15,949 [wrapper] ==== wrapper stderr END ====
2025-05-26 07:08:18 (1504): Guest Log:  *** Error codes and diagnostics ***
2025-05-26 07:08:18 (1504): Guest Log:     "exeErrorCode": 0,
2025-05-26 07:08:18 (1504): Guest Log:     "exeErrorDiag": "",
2025-05-26 07:08:18 (1504): Guest Log:     "pilotErrorCode": 0,
2025-05-26 07:08:18 (1504): Guest Log:     "pilotErrorDiag": "",
2025-05-26 07:08:18 (1504): Guest Log:  *** Listing of results directory ***
2025-05-26 07:08:18 (1504): Guest Log: total 208160
2025-05-26 07:08:18 (1504): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 25 13:09 pilot3.tar.gz
2025-05-26 07:08:18 (1504): Guest Log: -rwx------. 1 atlas atlas     37140 May 25 13:33 runpilot2-wrapper.sh
2025-05-26 07:08:18 (1504): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 25 13:33 queuedata.json
2025-05-26 07:08:18 (1504): Guest Log: -rwxr-xr-x. 1 atlas atlas      6382 May 25 21:50 init_data.xml
2025-05-26 07:08:18 (1504): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 May 25 21:50 input.tar.gz
2025-05-26 07:08:18 (1504): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 25 21:50 start_atlas.sh
2025-05-26 07:08:18 (1504): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 25 21:50 EVNT.44871834._001409.pool.root.1 -> /data/./ATLAS.root_0
2025-05-26 07:08:18 (1504): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 25 21:50 pandaJob.out
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas    990803 May 25 21:51 agis_schedconf.cvmfs.json
2025-05-26 07:08:18 (1504): Guest Log: drwx------. 4 atlas atlas      4096 May 25 21:51 pilot3
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas 200520104 May 26 11:06 HITS.44871837._035324.pool.root.1
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas      1030 May 26 11:07 memory_monitor_summary.json
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas   1596740 May 26 11:07 agis_ddmendpoints.agis.ALL.json
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas    604797 May 26 11:07 log.44871837._035324.job.log.tgz.1
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas        95 May 26 11:07 pilot_heartbeat.json
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas      7730 May 26 11:08 heartbeat.json
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas      4599 May 26 11:08 pilotlog.txt
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas   3833449 May 26 11:08 log.44871837._035324.job.log.1
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas       357 May 26 11:08 output.list
2025-05-26 07:08:18 (1504): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 26 11:08 runtime_log
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas   4454400 May 26 11:08 result.tar.gz
2025-05-26 07:08:18 (1504): Guest Log: -rw-r--r--. 1 atlas atlas      8587 May 26 11:08 runtime_log.err
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas       658 May 26 11:08 8lxMDmteQd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcIUKDm0ObZxm.diag
2025-05-26 07:08:18 (1504): Guest Log: Looking for outputfile HITS.44871837._035324.pool.root.1
2025-05-26 07:08:18 (1504): Guest Log: HITS file was successfully produced
2025-05-26 07:08:18 (1504): Guest Log: -rw-------. 1 atlas atlas 200520104 May 26 11:06 /home/atlas/RunAtlas/HITS.44871837._035324.pool.root.1
2025-05-26 07:08:21 (1504): Guest Log: Successfully finished the ATLAS job!
2025-05-26 07:08:21 (1504): Guest Log: Copying the results back to the shared directory!
2025-05-26 07:08:21 (1504): Guest Log:  *** Contents of shared directory: ***
2025-05-26 07:08:21 (1504): Guest Log: total 417272
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root 221768818 May 25 21:48 ATLAS.root_0
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root 200520104 May 26 11:08 HITS.pool.root.1
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root      6382 May 25 21:48 init_data.xml
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root    508874 May 25 21:47 input.tar.gz
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root   4454400 May 26 11:08 result.tar.gz
2025-05-26 07:08:21 (1504): Guest Log: -rwxrwxrwx. 1 root root     15093 May 25 21:47 start_atlas.sh
2025-05-26 07:08:21 (1504): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-26 07:08:21 (1504): VM Completion File Detected.
2025-05-26 07:08:21 (1504): Powering off VM.
2025-05-26 07:08:23 (1504): Successfully stopped VM.
2025-05-26 07:08:23 (1504): Deregistering VM. (boinc_4a03598772603d26, slot#3)
2025-05-26 07:08:23 (1504): Removing network bandwidth throttle group from VM.
2025-05-26 07:08:23 (1504): Removing VM from VirtualBox.
07:08:28 (1504): called boinc_finish(0)

</stderr_txt>
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