Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:48 (68860): wrapper (7.7.26015): starting
16:48:48 (68860): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 16:48:48] Arguments: --nthreads 8
[2025-05-25 16:48:48] Threads: 8
[2025-05-25 16:48:48] Checking for CVMFS
[2025-05-25 16:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 16:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 16:48:49] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 16:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 16:48:50] 2.12.6.0 1723263 9645 119272 146413 3 865 37493410 40960000 27994 16776704 0 117266987 99.715 89092588 39367 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 16:48:50] CVMFS is ok
[2025-05-25 16:48:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 16:48:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 16:48:50] Further information can be found at the LHC@home message board.
[2025-05-25 16:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 16:48:50] Checking for apptainer binary...
[2025-05-25 16:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 16:48:50] Running /usr/bin/apptainer --version
[2025-05-25 16:48:50] apptainer version 1.4.1-1.el9
[2025-05-25 16:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 16:48:51] c8-16-2.aglt2.org
[2025-05-25 16:48:51] apptainer works
[2025-05-25 16:48:51] Set ATHENA_PROC_NUMBER=8
[2025-05-25 16:48:51] Set ATHENA_CORE_NUMBER=8
[2025-05-25 16:48:51] Starting ATLAS job with PandaID=6665732465
[2025-05-25 16:48:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 18:26:22]  *** The last 200 lines of the pilot log: ***
[2025-05-25 18:26:22]  status_code=0
[2025-05-25 18:26:22]  storage_token=
[2025-05-25 18:26:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6665732465/log.44871837._036395.job.log.tgz.1
[2025-05-25 18:26:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/97/log.44871837._036395.job.log.tgz.1
[2025-05-25 18:26:22]  workdir=None
[2025-05-25 18:26:22] ]
[2025-05-25 18:26:22] 2025-05-25 22:25:38,440 | INFO     | transferring file log.44871837._036395.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6665732465/log.44871837._036395.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-05-25 18:26:22] 2025-05-25 22:25:38,441 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6665732465/log.44871837._036395.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._036395.job
[2025-05-25 18:26:22] 2025-05-25 22:25:38,511 | INFO     | adding to output.list: log.44871837._036395.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/97/log.44871837._036395.job.log.tg
[2025-05-25 18:26:22] 2025-05-25 22:25:38,511 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-25 18:26:22] 2025-05-25 22:25:38,511 | INFO     | summary of transferred files:
[2025-05-25 18:26:22] 2025-05-25 22:25:38,511 | INFO     |  -- lfn=log.44871837._036395.job.log.tgz.1, status_code=0, status=transferred
[2025-05-25 18:26:22] 2025-05-25 22:25:38,511 | INFO     | stage-out finished correctly
[2025-05-25 18:26:22] 2025-05-25 22:25:38,579 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-25 18:26:22] 2025-05-25 22:25:38,625 | INFO     | job 6665732465 has state=finished
[2025-05-25 18:26:22] 2025-05-25 22:25:38,625 | INFO     | preparing for final server update for job 6665732465 in state='finished'
[2025-05-25 18:26:22] 2025-05-25 22:25:38,626 | INFO     | this job has now completed (state=finished)
[2025-05-25 18:26:22] 2025-05-25 22:25:38,626 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-25 18:26:22] 2025-05-25 22:25:38,626 | INFO     | log transfer has been attempted: DONE
[2025-05-25 18:26:22] 2025-05-25 22:25:38,626 | INFO     | job 6665732465 has finished - writing final server update
[2025-05-25 18:26:22] 2025-05-25 22:25:38,626 | INFO     | total number of processed events: 400 (read)
[2025-05-25 18:26:22] 2025-05-25 22:25:38,631 | INFO     | executing command: lscpu
[2025-05-25 18:26:22] 2025-05-25 22:25:38,696 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-25 18:26:22] 2025-05-25 22:25:44,272 | WARNING  | process 127809 can no longer be monitored (due to stat problems) - aborting
[2025-05-25 18:26:22] 2025-05-25 22:25:44,272 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6665732465/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 18:26:22] 2025-05-25 22:25:44,273 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3743877 B
[2025-05-25 18:26:22] 2025-05-25 22:25:44,273 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16984 B
[2025-05-25 18:26:22] 2025-05-25 22:25:44,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-25 18:26:22] 2025-05-25 22:25:45,010 | INFO     | PID=99586 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-25 18:26:22] 2025-05-25 22:25:45,010 | INFO     | .. there are 24 such processes running
[2025-05-25 18:26:22] 2025-05-25 22:26:00,927 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-25 18:26:22] 2025-05-25 22:26:00,927 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6665732465/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 18:26:22] 2025-05-25 22:26:00,927 | INFO     | extracted standard info from prmon json
[2025-05-25 18:26:22] 2025-05-25 22:26:00,945 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 18:26:22] 2025-05-25 22:26:00,945 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 18:26:22] 2025-05-25 22:26:00,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 18:26:22] 2025-05-25 22:26:00,951 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 18:26:22] 2025-05-25 22:26:00,953 | INFO     | fitting pss+swap vs Time
[2025-05-25 18:26:22] 2025-05-25 22:26:00,953 | INFO     | sum of square deviations: 197203697.5
[2025-05-25 18:26:22] 2025-05-25 22:26:00,953 | INFO     | sum of deviations: 945170782.9999999
[2025-05-25 18:26:22] 2025-05-25 22:26:00,953 | INFO     | mean x: 1748209216.5
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | mean y: 2497298.11627907
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | -- intersect: -8376434207.50177
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | intersect: -8376434207.50177
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | chi2: 0.04073553610078447
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | -- intersect: -8376434207.50177
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | current memory leak: 4.79 B/s (using 86 data points, chi2=0.04)
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | ..............................
[2025-05-25 18:26:22] 2025-05-25 22:26:00,954 | INFO     | . Timing measurements:
[2025-05-25 18:26:22] 2025-05-25 22:26:00,970 | INFO     | . get job = 0 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . initial setup = 8 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . payload setup = 46 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . stage-in = 0 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . payload execution = 5635 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . stage-out = 1 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | . log creation = 0 s
[2025-05-25 18:26:22] 2025-05-25 22:26:00,971 | INFO     | ..............................
[2025-05-25 18:26:22] 2025-05-25 22:26:01,022 | INFO     | sufficient remaining disk space (169785425920 B)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,022 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,023 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6665732465: 4051817 B (within 2537553920 B limit)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,023 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6665732465/HITS.44871837._036395.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,023 | INFO     | total size of present files: 0 B (workdir size: 4051817 B)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,023 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6665732465/HITS.44871837._036395.pool.root.1 since it does not exist
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | 
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | job summary report
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | --------------------------------------------------
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | PanDA job id: 6665732465
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | task id: 44871837
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | errors: (none)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | pilot state: finished 
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | transexitcode: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | exeerrorcode: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | exeerrordiag: 
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | exitcode: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | exitmsg: OK
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | cpuconsumptiontime: 28962 s
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | nevents: 400
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | neventsw: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:01,318 | INFO     | pid: 127809
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | pgrp: 127809
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | corecount: 8
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | event service: False
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | sizes: {0: 2393570, 1: 2393769, 12: 2393769, 22: 2393797, 26: 2394031, 33: 2394059, 5685: 2420767, 5687: 2429764, 5709: 2429906}
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | --------------------------------------------------
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | 
[2025-05-25 18:26:22] 2025-05-25 22:26:01,319 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | job 6665732465 has completed (purged errors)
[2025-05-25 18:26:22] 2025-05-25 22:26:01,491 | INFO     | overall cleanup function is called
[2025-05-25 18:26:22] 2025-05-25 22:26:02,130 | INFO     | number of running child processes to parent process 127809: 1
[2025-05-25 18:26:22] 2025-05-25 22:26:02,130 | INFO     | maximum number of monitored processes: 6
[2025-05-25 18:26:22] 2025-05-25 22:26:02,130 | INFO     | aborting job monitoring since job object (job id=6665732465) has expired
[2025-05-25 18:26:22] 2025-05-25 22:26:02,509 | INFO     | --- collectZombieJob: --- 10, [127809]
[2025-05-25 18:26:22] 2025-05-25 22:26:02,510 | INFO     | zombie collector waiting for pid 127809
[2025-05-25 18:26:22] 2025-05-25 22:26:02,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 18:26:22] 2025-05-25 22:26:02,510 | INFO     | collected zombie processes
[2025-05-25 18:26:22] 2025-05-25 22:26:02,510 | INFO     | will attempt to kill all subprocesses of pid=127809
[2025-05-25 18:26:22] 2025-05-25 22:26:03,067 | INFO     | process IDs to be killed: [127809] (in reverse order)
[2025-05-25 18:26:22] 2025-05-25 22:26:03,366 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 18:26:22] 2025-05-25 22:26:03,367 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 18:26:22] 2025-05-25 22:26:03,407 | INFO     | did not find any defunct processes belonging to 127809
[2025-05-25 18:26:22] 2025-05-25 22:26:03,462 | INFO     | did not find any defunct processes belonging to 127809
[2025-05-25 18:26:22] 2025-05-25 22:26:03,475 | INFO     | ready for new job
[2025-05-25 18:26:22] 2025-05-25 22:26:03,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 18:26:22] 2025-05-25 22:26:03,477 | INFO     | **************************************
[2025-05-25 18:26:22] 2025-05-25 22:26:03,477 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 18:26:22] 2025-05-25 22:26:03,477 | INFO     | **************************************
[2025-05-25 18:26:22] 2025-05-25 22:26:03,477 | INFO     | 
[2025-05-25 18:26:22] 2025-05-25 22:26:03,508 | INFO     | architecture information:
[2025-05-25 18:26:22] 2025-05-25 22:26:03,516 | INFO     | executing command: cat /etc/os-release
[2025-05-25 18:26:22] 2025-05-25 22:26:03,553 | INFO     | cat /etc/os-release:
[2025-05-25 18:26:22] NAME="CentOS Linux"
[2025-05-25 18:26:22] VERSION="7 (Core)"
[2025-05-25 18:26:22] ID="centos"
[2025-05-25 18:26:22] ID_LIKE="rhel fedora"
[2025-05-25 18:26:22] VERSION_ID="7"
[2025-05-25 18:26:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 18:26:22] ANSI_COLOR="0;31"
[2025-05-25 18:26:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 18:26:22] HOME_URL="https://www.centos.org/"
[2025-05-25 18:26:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 18:26:22] 
[2025-05-25 18:26:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 18:26:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 18:26:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 18:26:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 18:26:22] 
[2025-05-25 18:26:22] 2025-05-25 22:26:03,553 | INFO     | **************************************
[2025-05-25 18:26:22] 2025-05-25 22:26:04,057 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-25 18:26:22] 2025-05-25 22:26:04,072 | INFO     | sufficient remaining disk space (169786474496 B)
[2025-05-25 18:26:22] 2025-05-25 22:26:04,072 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 18:26:22] 2025-05-25 22:26:04,072 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | INFO     | update_server=False
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 18:26:22] 2025-05-25 22:26:04,073 | INFO     | aborting loop
[2025-05-25 18:26:22] 2025-05-25 22:26:04,219 | INFO     | all data control threads have been joined
[2025-05-25 18:26:22] 2025-05-25 22:26:04,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 18:26:22] 2025-05-25 22:26:04,619 | INFO     | all job control threads have been joined
[2025-05-25 18:26:22] 2025-05-25 22:26:05,079 | INFO     | [job] retrieve thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,079 | INFO     | [job] job monitor thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,170 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,225 | INFO     | [data] control thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,468 | INFO     | all payload control threads have been joined
[2025-05-25 18:26:22] 2025-05-25 22:26:05,561 | INFO     | [payload] validate_post thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,626 | INFO     | [job] control thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,694 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:05,726 | INFO     | [payload] failed_post thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:06,062 | INFO     | [data] copytool_in thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:06,062 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:06,062 | INFO     | [job] validate thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:06,241 | INFO     | [data] copytool_out thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:06,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 18:26:22] 2025-05-25 22:26:06,475 | INFO     | [payload] control thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:07,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 18:26:22] 2025-05-25 22:26:07,339 | INFO     | [job] queue monitor thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:11,246 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:14,335 | INFO     | job.realtimelogging is not enabled
[2025-05-25 18:26:22] 2025-05-25 22:26:15,341 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 18:26:22] 2025-05-25 22:26:16,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049522870080)>', '<ExcThread(monitor, started 140048808797952)>']
[2025-05-25 18:26:22] 2025-05-25 22:26:17,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 18:26:22] 2025-05-25 22:26:17,152 | INFO     | [monitor] control thread has ended
[2025-05-25 18:26:22] 2025-05-25 22:26:21,325 | INFO     | all workflow threads have been joined
[2025-05-25 18:26:22] 2025-05-25 22:26:21,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 18:26:22] 2025-05-25 22:26:21,326 | INFO     | traces error code: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:21,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 18:26:22] 2025-05-25 22:26:21,707 [wrapper] ==== pilot stdout END ====
[2025-05-25 18:26:22] 2025-05-25 22:26:21,716 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 18:26:22] 2025-05-25 22:26:21,735 [wrapper] pilotpid: 99586
[2025-05-25 18:26:22] 2025-05-25 22:26:21,755 [wrapper] Pilot exit status: 0
[2025-05-25 18:26:22] 2025-05-25 22:26:21,886 [wrapper] pandaids: 6665732465
[2025-05-25 18:26:22] 2025-05-25 22:26:22,102 [wrapper] cleanup supervisor_pilot 1672278 99587
[2025-05-25 18:26:22] 2025-05-25 22:26:22,138 [wrapper] Test setup, not cleaning
[2025-05-25 18:26:22] 2025-05-25 22:26:22,178 [wrapper] apfmon messages muted
[2025-05-25 18:26:22] 2025-05-25 22:26:22,213 [wrapper] ==== wrapper stdout END ====
[2025-05-25 18:26:22] 2025-05-25 22:26:22,241 [wrapper] ==== wrapper stderr END ====
[2025-05-25 18:26:22]  *** Error codes and diagnostics ***
[2025-05-25 18:26:22]     "exeErrorCode": 0,
[2025-05-25 18:26:22]     "exeErrorDiag": "",
[2025-05-25 18:26:22]     "pilotErrorCode": 0,
[2025-05-25 18:26:22]     "pilotErrorDiag": "",
[2025-05-25 18:26:22]  *** Listing of results directory ***
[2025-05-25 18:26:22] total 421236
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas    495897 May 25 10:50 pilot3.tar.gz
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas      5111 May 25 11:14 queuedata.json
[2025-05-25 18:26:22] -rwx------. 1 boincer umatlas     37140 May 25 11:15 runpilot2-wrapper.sh
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas       100 May 25 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 18:26:22] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 16:48 run_atlas
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas       105 May 25 16:48 job.xml
[2025-05-25 18:26:22] -rw-r--r--. 2 boincer umatlas 226381566 May 25 16:48 EVNT.44871834._001451.pool.root.1
[2025-05-25 18:26:22] -rw-r--r--. 2 boincer umatlas     15093 May 25 16:48 start_atlas.sh
[2025-05-25 18:26:22] drwxrwx--x. 2 boincer umatlas      4096 May 25 16:48 shared
[2025-05-25 18:26:22] -rw-r--r--. 2 boincer umatlas    508881 May 25 16:48 input.tar.gz
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas         0 May 25 16:48 boinc_lockfile
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas      2559 May 25 16:48 pandaJob.out
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas    990803 May 25 16:49 agis_schedconf.cvmfs.json
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas   1596740 May 25 16:49 agis_ddmendpoints.agis.ALL.json
[2025-05-25 18:26:22] drwx------. 4 boincer umatlas      4096 May 25 16:49 pilot3
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas      7161 May 25 18:19 init_data.xml
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas 199442685 May 25 18:24 HITS.44871837._036395.pool.root.1
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas       529 May 25 18:24 boinc_task_state.xml
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas      1049 May 25 18:25 memory_monitor_summary.json
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas        95 May 25 18:25 pilot_heartbeat.json
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas    328585 May 25 18:25 log.44871837._036395.job.log.tgz.1
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas      7729 May 25 18:26 heartbeat.json
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas      8192 May 25 18:26 boinc_mmap_file
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas        27 May 25 18:26 wrapper_checkpoint.txt
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas      4549 May 25 18:26 pilotlog.txt
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas    517837 May 25 18:26 log.44871837._036395.job.log.1
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas       357 May 25 18:26 output.list
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas       620 May 25 18:26 runtime_log
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas    870400 May 25 18:26 result.tar.gz
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas      8654 May 25 18:26 runtime_log.err
[2025-05-25 18:26:22] -rw-------. 1 boincer umatlas       656 May 25 18:26 F5KKDmrFSd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtSUKDmEoxOgn.diag
[2025-05-25 18:26:22] -rw-r--r--. 1 boincer umatlas     14360 May 25 18:26 stderr.txt
[2025-05-25 18:26:23] HITS file was successfully produced:
[2025-05-25 18:26:23] -rw-------. 1 boincer umatlas 199442685 May 25 18:24 shared/HITS.pool.root.1
[2025-05-25 18:26:23]  *** Contents of shared directory: ***
[2025-05-25 18:26:23] total 417220
[2025-05-25 18:26:23] -rw-r--r--. 2 boincer umatlas 226381566 May 25 16:48 ATLAS.root_0
[2025-05-25 18:26:23] -rw-r--r--. 2 boincer umatlas     15093 May 25 16:48 start_atlas.sh
[2025-05-25 18:26:23] -rw-r--r--. 2 boincer umatlas    508881 May 25 16:48 input.tar.gz
[2025-05-25 18:26:23] -rw-------. 1 boincer umatlas 199442685 May 25 18:24 HITS.pool.root.1
[2025-05-25 18:26:23] -rw-------. 1 boincer umatlas    870400 May 25 18:26 result.tar.gz
18:26:25 (68860): run_atlas exited; CPU time 29099.735306
18:26:25 (68860): called boinc_finish(0)

</stderr_txt>
]]>

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