Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:06:06 (2479): wrapper (7.7.26015): starting
08:06:06 (2479): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 08:06:06] Arguments: --nthreads 8
[2025-05-26 08:06:06] Threads: 8
[2025-05-26 08:06:06] Checking for CVMFS
[2025-05-26 08:06:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 08:06:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 08:06:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 08:06:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 08:06:08] 2.11.2.0 26253 19863 94336 146426 1 256 20577757 25165824 2641 130560 0 11583459 99.755 13214673 1944 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 08:06:08] CVMFS is ok
[2025-05-26 08:06:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 08:06:08] Checking for apptainer binary...
[2025-05-26 08:06:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 08:06:08] Running /usr/bin/apptainer --version
[2025-05-26 08:06:08] apptainer version 1.3.2-1.el7
[2025-05-26 08:06:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 08:09:51] cg-vwn377.simple-grid.lan
[2025-05-26 08:09:51] apptainer works
[2025-05-26 08:09:51] Set ATHENA_PROC_NUMBER=8
[2025-05-26 08:09:51] Set ATHENA_CORE_NUMBER=8
[2025-05-26 08:09:51] Starting ATLAS job with PandaID=6665736109
[2025-05-26 08:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 15:06:03]  *** The last 200 lines of the pilot log: ***
[2025-05-26 15:06:03] 2025-05-26 11:15:23,319 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6665736109/memory_monitor_summary.json (trf name=prmon)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,319 | INFO     | extracted standard info from prmon json
[2025-05-26 15:06:03] 2025-05-26 11:15:23,319 | INFO     | extracted standard memory fields from prmon json
[2025-05-26 15:06:03] 2025-05-26 11:15:23,320 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-26 15:06:03] 2025-05-26 11:15:23,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-26 15:06:03] 2025-05-26 11:15:23,320 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-26 15:06:03] 2025-05-26 11:15:23,326 | INFO     | fitting pss+swap vs Time
[2025-05-26 15:06:03] 2025-05-26 11:15:23,327 | INFO     | sum of square deviations: 8205826414.5
[2025-05-26 15:06:03] 2025-05-26 11:15:23,330 | INFO     | sum of deviations: 17099758967.499996
[2025-05-26 15:06:03] 2025-05-26 11:15:23,330 | INFO     | mean x: 1748248923.5
[2025-05-26 15:06:03] 2025-05-26 11:15:23,331 | INFO     | mean y: 2488024.2046979866
[2025-05-26 15:06:03] 2025-05-26 11:15:23,331 | INFO     | -- intersect: -3640610634.842782
[2025-05-26 15:06:03] 2025-05-26 11:15:23,331 | INFO     | intersect: -3640610634.842782
[2025-05-26 15:06:03] 2025-05-26 11:15:23,331 | INFO     | chi2: 2.3085731177762208
[2025-05-26 15:06:03] 2025-05-26 11:15:23,332 | INFO     | sum of square deviations: 7799669962.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,335 | INFO     | sum of deviations: 36543683884.999985
[2025-05-26 15:06:03] 2025-05-26 11:15:23,335 | INFO     | mean x: 1748248771.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,335 | INFO     | mean y: 2495224.1160409558
[2025-05-26 15:06:03] 2025-05-26 11:15:23,335 | INFO     | -- intersect: -8188550134.344439
[2025-05-26 15:06:03] 2025-05-26 11:15:23,335 | INFO     | intersect: -8188550134.344439
[2025-05-26 15:06:03] 2025-05-26 11:15:23,336 | INFO     | chi2: 1.5376122544407675
[2025-05-26 15:06:03] 2025-05-26 11:15:23,336 | INFO     | current chi2=1.5376122544407675 (change=33.39555751554868 %)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,337 | INFO     | sum of square deviations: 7407141672.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,340 | INFO     | sum of deviations: 35834508468.50001
[2025-05-26 15:06:03] 2025-05-26 11:15:23,340 | INFO     | mean x: 1748248618.5
[2025-05-26 15:06:03] 2025-05-26 11:15:23,340 | INFO     | mean y: 2494948.579861111
[2025-05-26 15:06:03] 2025-05-26 11:15:23,340 | INFO     | -- intersect: -8455238506.350295
[2025-05-26 15:06:03] 2025-05-26 11:15:23,340 | INFO     | intersect: -8455238506.350295
[2025-05-26 15:06:03] 2025-05-26 11:15:23,341 | INFO     | chi2: 1.5381354776429013
[2025-05-26 15:06:03] 2025-05-26 11:15:23,341 | INFO     | current chi2=1.5381354776429013 (change=-0.03402829293422957 %)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,341 | INFO     | right removable region: 287
[2025-05-26 15:06:03] 2025-05-26 11:15:23,342 | INFO     | sum of square deviations: 7799669962.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,345 | INFO     | sum of deviations: -28344346132.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,345 | INFO     | mean x: 1748249076.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,345 | INFO     | mean y: 2504959.8020477816
[2025-05-26 15:06:03] 2025-05-26 11:15:23,345 | INFO     | -- intersect: 6355719541.510674
[2025-05-26 15:06:03] 2025-05-26 11:15:23,345 | INFO     | intersect: 6355719541.510674
[2025-05-26 15:06:03] 2025-05-26 11:15:23,346 | INFO     | chi2: 0.8957343847461865
[2025-05-26 15:06:03] 2025-05-26 11:15:23,346 | INFO     | current chi2=0.8957343847461865 (change=61.19965281372502 %)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,346 | INFO     | sum of square deviations: 7407141672.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,349 | INFO     | sum of deviations: -27363702171.500004
[2025-05-26 15:06:03] 2025-05-26 11:15:23,349 | INFO     | mean x: 1748249228.5
[2025-05-26 15:06:03] 2025-05-26 11:15:23,350 | INFO     | mean y: 2504559.2256944445
[2025-05-26 15:06:03] 2025-05-26 11:15:23,350 | INFO     | -- intersect: 6460943364.448625
[2025-05-26 15:06:03] 2025-05-26 11:15:23,350 | INFO     | intersect: 6460943364.448625
[2025-05-26 15:06:03] 2025-05-26 11:15:23,350 | INFO     | chi2: 0.8820682781979738
[2025-05-26 15:06:03] 2025-05-26 11:15:23,350 | INFO     | current chi2=0.8820682781979738 (change=1.5256873891343419 %)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,351 | INFO     | left removable region: 20
[2025-05-26 15:06:03] 2025-05-26 11:15:23,351 | INFO     | sum of square deviations: 5902093918.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,354 | INFO     | sum of deviations: 10932188993.000002
[2025-05-26 15:06:03] 2025-05-26 11:15:23,354 | INFO     | mean x: 1748249198.0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,354 | INFO     | mean y: 2504030.7303370787
[2025-05-26 15:06:03] 2025-05-26 11:15:23,354 | INFO     | -- intersect: -3235701071.548532
[2025-05-26 15:06:03] 2025-05-26 11:15:23,354 | INFO     | intersect: -3235701071.548532
[2025-05-26 15:06:03] 2025-05-26 11:15:23,355 | INFO     | chi2: 0.01466954167896648
[2025-05-26 15:06:03] 2025-05-26 11:15:23,355 | INFO     | -- intersect: -3235701071.548532
[2025-05-26 15:06:03] 2025-05-26 11:15:23,355 | INFO     | current memory leak: 1.85 B/s (using 267 data points, chi2=0.01)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | ..............................
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . Timing measurements:
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . get job = 0 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . initial setup = 2 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . payload setup = 10 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . stage-in = 0 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . payload execution = 18177 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . stage-out = 3 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | . log creation = 1 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,356 | INFO     | ..............................
[2025-05-26 15:06:03] 2025-05-26 11:15:23,500 | INFO     | 
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | job summary report
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | --------------------------------------------------
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | PanDA job id: 6665736109
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | task id: 44871837
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | errors: (none)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | pilot state: finished 
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | transexitcode: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,501 | INFO     | exeerrorcode: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | exeerrordiag: 
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | exitcode: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | exitmsg: OK
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | cpuconsumptiontime: 69798 s
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | nevents: 400
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | neventsw: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | pid: 18844
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | pgrp: 18844
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | corecount: 8
[2025-05-26 15:06:03] 2025-05-26 11:15:23,502 | INFO     | event service: False
[2025-05-26 15:06:03] 2025-05-26 11:15:23,503 | INFO     | sizes: {0: 2393570, 1: 2393769, 10: 2393975, 12: 2394003, 18192: 2425686, 18196: 2434811, 18289: 2434925}
[2025-05-26 15:06:03] 2025-05-26 11:15:23,503 | INFO     | --------------------------------------------------
[2025-05-26 15:06:03] 2025-05-26 11:15:23,503 | INFO     | 
[2025-05-26 15:06:03] 2025-05-26 11:15:23,503 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-26 15:06:03] 2025-05-26 11:15:23,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,859 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,859 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,859 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | job 6665736109 has completed (purged errors)
[2025-05-26 15:06:03] 2025-05-26 11:15:23,861 | INFO     | overall cleanup function is called
[2025-05-26 15:06:03] 2025-05-26 11:15:24,870 | INFO     | --- collectZombieJob: --- 10, [18844]
[2025-05-26 15:06:03] 2025-05-26 11:15:24,870 | INFO     | zombie collector waiting for pid 18844
[2025-05-26 15:06:03] 2025-05-26 11:15:24,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 15:06:03] 2025-05-26 11:15:24,870 | INFO     | collected zombie processes
[2025-05-26 15:06:03] 2025-05-26 11:15:24,871 | INFO     | will attempt to kill all subprocesses of pid=18844
[2025-05-26 15:06:03] 2025-05-26 11:15:24,999 | INFO     | process IDs to be killed: [18844] (in reverse order)
[2025-05-26 15:06:03] 2025-05-26 11:15:26,074 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 15:06:03] 2025-05-26 11:15:26,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 15:06:03] 2025-05-26 11:15:26,078 | INFO     | did not find any defunct processes belonging to 18844
[2025-05-26 15:06:03] 2025-05-26 11:15:26,081 | INFO     | did not find any defunct processes belonging to 18844
[2025-05-26 15:06:03] 2025-05-26 11:15:26,081 | INFO     | ready for new job
[2025-05-26 15:06:03] 2025-05-26 11:15:26,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 15:06:03] 2025-05-26 11:15:26,083 | INFO     | **************************************
[2025-05-26 15:06:03] 2025-05-26 11:15:26,083 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 15:06:03] 2025-05-26 11:15:26,084 | INFO     | **************************************
[2025-05-26 15:06:03] 2025-05-26 11:15:26,084 | INFO     | 
[2025-05-26 15:06:03] 2025-05-26 11:15:26,085 | INFO     | pilot is running in a VM
[2025-05-26 15:06:03] 2025-05-26 11:15:26,085 | INFO     | architecture information:
[2025-05-26 15:06:03] 2025-05-26 11:15:26,091 | INFO     | executing command: cat /etc/os-release
[2025-05-26 15:06:03] 2025-05-26 11:15:26,340 | INFO     | cat /etc/os-release:
[2025-05-26 15:06:03] NAME="CentOS Linux"
[2025-05-26 15:06:03] VERSION="7 (Core)"
[2025-05-26 15:06:03] ID="centos"
[2025-05-26 15:06:03] ID_LIKE="rhel fedora"
[2025-05-26 15:06:03] VERSION_ID="7"
[2025-05-26 15:06:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 15:06:03] ANSI_COLOR="0;31"
[2025-05-26 15:06:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 15:06:03] HOME_URL="https://www.centos.org/"
[2025-05-26 15:06:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 15:06:03] 
[2025-05-26 15:06:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 15:06:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 15:06:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 15:06:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 15:06:03] 
[2025-05-26 15:06:03] 2025-05-26 11:15:26,341 | INFO     | **************************************
[2025-05-26 15:06:03] 2025-05-26 11:15:26,843 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-26 15:06:03] 2025-05-26 11:15:27,087 | INFO     | sufficient remaining disk space (491558797312 B)
[2025-05-26 15:06:03] 2025-05-26 11:15:27,088 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 15:06:03] 2025-05-26 11:15:27,088 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 15:06:03] 2025-05-26 11:15:27,088 | INFO     | update_server=False
[2025-05-26 15:06:03] 2025-05-26 11:15:27,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 15:06:03] 2025-05-26 11:15:27,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 15:06:03] 2025-05-26 11:15:27,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:06:03] 2025-05-26 11:15:27,176 | INFO     | aborting loop
[2025-05-26 15:06:03] 2025-05-26 11:15:27,206 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 15:06:03] 2025-05-26 11:15:27,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 15:06:03] 2025-05-26 11:15:27,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 15:06:03] 2025-05-26 11:15:27,306 | INFO     | all payload control threads have been joined
[2025-05-26 15:06:03] 2025-05-26 11:15:27,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 15:06:03] 2025-05-26 11:15:27,862 | INFO     | all data control threads have been joined
[2025-05-26 15:06:03] 2025-05-26 11:15:28,065 | INFO     | all job control threads have been joined
[2025-05-26 15:06:03] 2025-05-26 11:15:28,094 | INFO     | [job] retrieve thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,182 | INFO     | [job] job monitor thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,312 | INFO     | [payload] control thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,516 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 15:06:03] 2025-05-26 11:15:28,600 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,721 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,868 | INFO     | [data] control thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,887 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,940 | INFO     | [data] copytool_in thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:28,951 | INFO     | [payload] failed_post thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,071 | INFO     | [job] control thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,081 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,095 | INFO     | [data] copytool_out thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,254 | INFO     | [job] validate thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,522 | INFO     | [job] queue monitor thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:29,549 | INFO     | [payload] validate_post thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:31,612 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 15:06:03] 2025-05-26 11:15:32,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979723691840)>', '<ExcThread(monitor, started 139979158189824)>']
[2025-05-26 15:06:03] 2025-05-26 11:15:33,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 15:06:03] 2025-05-26 11:15:33,241 | INFO     | [monitor] control thread has ended
[2025-05-26 15:06:03] 2025-05-26 11:15:37,275 | INFO     | all workflow threads have been joined
[2025-05-26 15:06:03] 2025-05-26 11:15:37,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 15:06:03] 2025-05-26 11:15:37,276 | INFO     | traces error code: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:37,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 15:06:03] 2025-05-26 11:15:37,613 [wrapper] ==== pilot stdout END ====
[2025-05-26 15:06:03] 2025-05-26 11:15:37,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 15:06:03] 2025-05-26 11:15:37,805 [wrapper] pilotpid: 10273
[2025-05-26 15:06:03] 2025-05-26 11:15:37,918 [wrapper] Pilot exit status: 0
[2025-05-26 15:06:03] 2025-05-26 11:15:38,403 [wrapper] pandaids: 6665736109
[2025-05-26 15:06:03] 2025-05-26 11:15:39,139 [wrapper] cleanup supervisor_pilot 27489 10274
[2025-05-26 15:06:03] 2025-05-26 11:15:39,229 [wrapper] Test setup, not cleaning
[2025-05-26 15:06:03] 2025-05-26 11:15:39,306 [wrapper] apfmon messages muted
[2025-05-26 15:06:03] 2025-05-26 11:15:39,377 [wrapper] ==== wrapper stdout END ====
[2025-05-26 15:06:03] 2025-05-26 11:15:39,434 [wrapper] ==== wrapper stderr END ====
[2025-05-26 15:06:03]  *** Error codes and diagnostics ***
[2025-05-26 15:06:03]     "exeErrorCode": 0,
[2025-05-26 15:06:03]     "exeErrorDiag": "",
[2025-05-26 15:06:03]     "pilotErrorCode": 0,
[2025-05-26 15:06:03]     "pilotErrorDiag": "",
[2025-05-26 15:06:03]  *** Listing of results directory ***
[2025-05-26 15:06:03] total 419136
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc    495897 May 25 19:08 pilot3.tar.gz
[2025-05-26 15:06:03] -rwx------. 1 boinc boinc     37140 May 25 19:21 runpilot2-wrapper.sh
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc      5111 May 25 19:21 queuedata.json
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc       100 May 26 08:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 15:06:03] -rwxr-xr-x. 1 boinc boinc      7986 May 26 08:06 run_atlas
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc       105 May 26 08:06 job.xml
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc      6371 May 26 08:06 init_data.xml
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc 226501687 May 26 08:06 EVNT.44871834._001520.pool.root.1
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc     15093 May 26 08:06 start_atlas.sh
[2025-05-26 15:06:03] drwxrwx--x. 2 boinc boinc        68 May 26 08:06 shared
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc    508876 May 26 08:06 input.tar.gz
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc         0 May 26 08:06 boinc_lockfile
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc      2559 May 26 08:09 pandaJob.out
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc    990811 May 26 08:10 agis_schedconf.cvmfs.json
[2025-05-26 15:06:03] drwx------. 4 boinc boinc      4096 May 26 08:10 pilot3
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc 194882273 May 26 13:12 HITS.44871837._038118.pool.root.1
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc       531 May 26 13:12 boinc_task_state.xml
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc      1017 May 26 13:13 memory_monitor_summary.json
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc   1596740 May 26 13:13 agis_ddmendpoints.agis.ALL.json
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc    433136 May 26 13:13 log.44871837._038118.job.log.tgz.1
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc        95 May 26 13:14 pilot_heartbeat.json
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc      7689 May 26 13:15 heartbeat.json
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc      4416 May 26 13:15 pilotlog.txt
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc   1561180 May 26 13:15 log.44871837._038118.job.log.1
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc       357 May 26 13:15 output.list
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc       620 May 26 13:15 runtime_log
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc   2017280 May 26 13:15 result.tar.gz
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc       657 May 26 13:15 uuHKDmoDUd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmasOKDmuxJZcn.diag
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc      8659 May 26 13:15 runtime_log.err
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc      8192 May 26 15:06 boinc_mmap_file
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc        28 May 26 15:06 wrapper_checkpoint.txt
[2025-05-26 15:06:03] -rw-r--r--. 1 boinc boinc     20480 May 26 15:06 stderr.txt
[2025-05-26 15:06:03] HITS file was successfully produced:
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc 194882273 May 26 13:12 shared/HITS.pool.root.1
[2025-05-26 15:06:03]  *** Contents of shared directory: ***
[2025-05-26 15:06:03] total 414000
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc 226501687 May 26 08:06 ATLAS.root_0
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc     15093 May 26 08:06 start_atlas.sh
[2025-05-26 15:06:03] -rw-r--r--. 2 boinc boinc    508876 May 26 08:06 input.tar.gz
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc 194882273 May 26 13:12 HITS.pool.root.1
[2025-05-26 15:06:03] -rw-------. 1 boinc boinc   2017280 May 26 13:15 result.tar.gz
15:06:05 (2479): run_atlas exited; CPU time 70036.699985
15:06:05 (2479): called boinc_finish(0)

</stderr_txt>
]]>

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