Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:28:07 (1411007): wrapper (7.7.26015): starting
15:28:07 (1411007): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 15:28:07] Arguments: --nthreads 8
[2025-05-25 15:28:07] Threads: 8
[2025-05-25 15:28:07] Checking for CVMFS
[2025-05-25 15:28:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 15:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 15:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 15:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 15:28:07] 2.12.6.0 4868 23333 359880 146412 1 648 22117566 32935937 27880 16776704 0 199869927 99.670 174417047 21944 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 15:28:07] CVMFS is ok
[2025-05-25 15:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 15:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 15:28:07] Further information can be found at the LHC@home message board.
[2025-05-25 15:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 15:28:07] Checking for apptainer binary...
[2025-05-25 15:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 15:28:07] Running /usr/bin/apptainer --version
[2025-05-25 15:28:07] apptainer version 1.4.1-1.el9
[2025-05-25 15:28:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 15:28:07] c7-3-34.aglt2.org
[2025-05-25 15:28:07] apptainer works
[2025-05-25 15:28:07] Set ATHENA_PROC_NUMBER=8
[2025-05-25 15:28:07] Set ATHENA_CORE_NUMBER=8
[2025-05-25 15:28:07] Starting ATLAS job with PandaID=6665730271
[2025-05-25 15:28:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 18:11:26]  *** The last 200 lines of the pilot log: ***
[2025-05-25 18:11:26] 2025-05-25 22:11:10,344 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 18:11:26] 2025-05-25 22:11:10,344 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6665730271/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,345 | INFO     | extracted standard info from prmon json
[2025-05-25 18:11:26] 2025-05-25 22:11:10,345 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 18:11:26] 2025-05-25 22:11:10,345 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 18:11:26] 2025-05-25 22:11:10,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 18:11:26] 2025-05-25 22:11:10,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 18:11:26] 2025-05-25 22:11:10,368 | INFO     | fitting pss+swap vs Time
[2025-05-25 18:11:26] 2025-05-25 22:11:10,368 | INFO     | sum of square deviations: 1270105114.1937554
[2025-05-25 18:11:26] 2025-05-25 22:11:10,369 | INFO     | sum of deviations: -26466779331.93125
[2025-05-25 18:11:26] 2025-05-25 22:11:10,369 | INFO     | mean x: 1748206198.60625
[2025-05-25 18:11:26] 2025-05-25 22:11:10,369 | INFO     | mean y: 2111727.73125
[2025-05-25 18:11:26] 2025-05-25 22:11:10,369 | INFO     | -- intersect: 36431685286.7647
[2025-05-25 18:11:26] 2025-05-25 22:11:10,370 | INFO     | intersect: 36431685286.7647
[2025-05-25 18:11:26] 2025-05-25 22:11:10,370 | INFO     | chi2: 4.168957600068116
[2025-05-25 18:11:26] 2025-05-25 22:11:10,370 | INFO     | sum of square deviations: 1154722089.1354902
[2025-05-25 18:11:26] 2025-05-25 22:11:10,371 | INFO     | sum of deviations: 3959765504.6000085
[2025-05-25 18:11:26] 2025-05-25 22:11:10,371 | INFO     | mean x: 1748206046.1096773
[2025-05-25 18:11:26] 2025-05-25 22:11:10,371 | INFO     | mean y: 2151548.2
[2025-05-25 18:11:26] 2025-05-25 22:11:10,371 | INFO     | -- intersect: -5992785295.435644
[2025-05-25 18:11:26] 2025-05-25 22:11:10,371 | INFO     | intersect: -5992785295.435644
[2025-05-25 18:11:26] 2025-05-25 22:11:10,391 | INFO     | chi2: 1.7433145049053032
[2025-05-25 18:11:26] 2025-05-25 22:11:10,392 | INFO     | current chi2=1.7433145049053032 (change=58.18344362924633 %)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,392 | INFO     | sum of square deviations: 1046520134.193334
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | sum of deviations: 4731798673.466667
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | mean x: 1748205893.5933332
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | mean y: 2152579.466666667
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | -- intersect: -7902290018.408233
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | intersect: -7902290018.408233
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | chi2: 1.730734398328126
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | current chi2=1.730734398328126 (change=0.7216200256338985 %)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | right removable region: 149
[2025-05-25 18:11:26] 2025-05-25 22:11:10,393 | INFO     | sum of square deviations: 1154711719.1354902
[2025-05-25 18:11:26] 2025-05-25 22:11:10,394 | INFO     | sum of deviations: -50093404641.43225
[2025-05-25 18:11:26] 2025-05-25 22:11:10,394 | INFO     | mean x: 1748206351.1096773
[2025-05-25 18:11:26] 2025-05-25 22:11:10,394 | INFO     | mean y: 2142643.5548387095
[2025-05-25 18:11:26] 2025-05-25 22:11:10,394 | INFO     | -- intersect: 75842377649.07074
[2025-05-25 18:11:26] 2025-05-25 22:11:10,394 | INFO     | intersect: 75842377649.07074
[2025-05-25 18:11:26] 2025-05-25 22:11:10,395 | INFO     | chi2: 2.6251486915565754
[2025-05-25 18:11:26] 2025-05-25 22:11:10,395 | INFO     | current chi2=2.6251486915565754 (change=37.03105324185395 %)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,395 | INFO     | sum of square deviations: 1046527761.5733364
[2025-05-25 18:11:26] 2025-05-25 22:11:10,412 | INFO     | sum of deviations: -44824274938.10666
[2025-05-25 18:11:26] 2025-05-25 22:11:10,412 | INFO     | mean x: 1748206503.6133332
[2025-05-25 18:11:26] 2025-05-25 22:11:10,412 | INFO     | mean y: 2135180.1533333333
[2025-05-25 18:11:26] 2025-05-25 22:11:10,412 | INFO     | -- intersect: 74880310269.11768
[2025-05-25 18:11:26] 2025-05-25 22:11:10,412 | INFO     | intersect: 74880310269.11768
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | chi2: 2.607188328985653
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | current chi2=2.607188328985653 (change=0.6841655342681958 %)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | left removable region: 20
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | sum of square deviations: 665623719.6899253
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | sum of deviations: -9523801792.92249
[2025-05-25 18:11:26] 2025-05-25 22:11:10,413 | INFO     | mean x: 1748206473.1007752
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | mean y: 2172129.2248062016
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | -- intersect: 25015661658.522102
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | intersect: 25015661658.522102
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | chi2: 0.0652791838492642
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | -- intersect: 25015661658.522102
[2025-05-25 18:11:26] 2025-05-25 22:11:10,414 | INFO     | current memory leak: -14.31 B/s (using 129 data points, chi2=0.07)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,415 | INFO     | ..............................
[2025-05-25 18:11:26] 2025-05-25 22:11:10,415 | INFO     | . Timing measurements:
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . get job = 0 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . initial setup = 2 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . payload setup = 13 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . stage-in = 0 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . payload execution = 9709 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . stage-out = 1 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | . log creation = 0 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,433 | INFO     | ..............................
[2025-05-25 18:11:26] 2025-05-25 22:11:10,893 | INFO     | 
[2025-05-25 18:11:26] 2025-05-25 22:11:10,893 | INFO     | job summary report
[2025-05-25 18:11:26] 2025-05-25 22:11:10,893 | INFO     | --------------------------------------------------
[2025-05-25 18:11:26] 2025-05-25 22:11:10,896 | INFO     | PanDA job id: 6665730271
[2025-05-25 18:11:26] 2025-05-25 22:11:10,896 | INFO     | task id: 44871837
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | errors: (none)
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | pilot state: finished 
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | transexitcode: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | exeerrorcode: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:10,897 | INFO     | exeerrordiag: 
[2025-05-25 18:11:26] 2025-05-25 22:11:10,900 | INFO     | exitcode: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | exitmsg: OK
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | cpuconsumptiontime: 37681 s
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | nevents: 400
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | neventsw: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | pid: 1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | pgrp: 1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | corecount: 8
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | event service: False
[2025-05-25 18:11:26] 2025-05-25 22:11:10,901 | INFO     | sizes: {0: 2393570, 1: 2393769, 8: 2393975, 11: 2394003, 9727: 2422437, 9729: 2431378, 9732: 2431562, 9746: 2431732}
[2025-05-25 18:11:26] 2025-05-25 22:11:10,907 | INFO     | --------------------------------------------------
[2025-05-25 18:11:26] 2025-05-25 22:11:10,907 | INFO     | 
[2025-05-25 18:11:26] 2025-05-25 22:11:10,908 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-25 18:11:26] 2025-05-25 22:11:11,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,058 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,058 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,058 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | job 6665730271 has completed (purged errors)
[2025-05-25 18:11:26] 2025-05-25 22:11:11,076 | INFO     | overall cleanup function is called
[2025-05-25 18:11:26] 2025-05-25 22:11:12,099 | INFO     | --- collectZombieJob: --- 10, [1479149]
[2025-05-25 18:11:26] 2025-05-25 22:11:12,100 | INFO     | zombie collector waiting for pid 1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:12,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 18:11:26] 2025-05-25 22:11:12,100 | INFO     | collected zombie processes
[2025-05-25 18:11:26] 2025-05-25 22:11:12,100 | INFO     | will attempt to kill all subprocesses of pid=1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:12,718 | INFO     | process IDs to be killed: [1479149] (in reverse order)
[2025-05-25 18:11:26] 2025-05-25 22:11:13,005 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 18:11:26] 2025-05-25 22:11:13,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 18:11:26] 2025-05-25 22:11:13,046 | INFO     | did not find any defunct processes belonging to 1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:13,068 | INFO     | did not find any defunct processes belonging to 1479149
[2025-05-25 18:11:26] 2025-05-25 22:11:13,068 | INFO     | ready for new job
[2025-05-25 18:11:26] 2025-05-25 22:11:13,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 18:11:26] 2025-05-25 22:11:13,070 | INFO     | **************************************
[2025-05-25 18:11:26] 2025-05-25 22:11:13,070 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 18:11:26] 2025-05-25 22:11:13,070 | INFO     | **************************************
[2025-05-25 18:11:26] 2025-05-25 22:11:13,070 | INFO     | 
[2025-05-25 18:11:26] 2025-05-25 22:11:13,088 | INFO     | architecture information:
[2025-05-25 18:11:26] 2025-05-25 22:11:13,091 | INFO     | executing command: cat /etc/os-release
[2025-05-25 18:11:26] 2025-05-25 22:11:13,176 | INFO     | cat /etc/os-release:
[2025-05-25 18:11:26] NAME="CentOS Linux"
[2025-05-25 18:11:26] VERSION="7 (Core)"
[2025-05-25 18:11:26] ID="centos"
[2025-05-25 18:11:26] ID_LIKE="rhel fedora"
[2025-05-25 18:11:26] VERSION_ID="7"
[2025-05-25 18:11:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 18:11:26] ANSI_COLOR="0;31"
[2025-05-25 18:11:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 18:11:26] HOME_URL="https://www.centos.org/"
[2025-05-25 18:11:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 18:11:26] 
[2025-05-25 18:11:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 18:11:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 18:11:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 18:11:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 18:11:26] 
[2025-05-25 18:11:26] 2025-05-25 22:11:13,177 | INFO     | **************************************
[2025-05-25 18:11:26] 2025-05-25 22:11:13,681 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-25 18:11:26] 2025-05-25 22:11:13,715 | INFO     | sufficient remaining disk space (73577529344 B)
[2025-05-25 18:11:26] 2025-05-25 22:11:13,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 18:11:26] 2025-05-25 22:11:13,715 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 18:11:26] 2025-05-25 22:11:13,715 | INFO     | update_server=False
[2025-05-25 18:11:26] 2025-05-25 22:11:13,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 18:11:26] 2025-05-25 22:11:13,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 18:11:26] 2025-05-25 22:11:13,717 | INFO     | aborting loop
[2025-05-25 18:11:26] 2025-05-25 22:11:14,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 18:11:26] 2025-05-25 22:11:14,396 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 18:11:26] 2025-05-25 22:11:14,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 18:11:26] 2025-05-25 22:11:14,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 18:11:26] 2025-05-25 22:11:14,577 | INFO     | all data control threads have been joined
[2025-05-25 18:11:26] 2025-05-25 22:11:14,721 | INFO     | [job] retrieve thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:14,726 | INFO     | [job] job monitor thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:14,875 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:14,952 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:14,958 | INFO     | [payload] failed_post thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,120 | INFO     | all job control threads have been joined
[2025-05-25 18:11:26] 2025-05-25 22:11:15,153 | INFO     | all payload control threads have been joined
[2025-05-25 18:11:26] 2025-05-25 22:11:15,585 | INFO     | [data] control thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,629 | INFO     | [data] copytool_in thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 18:11:26] 2025-05-25 22:11:15,788 | INFO     | [job] validate thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,866 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,944 | INFO     | [payload] validate_post thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:15,963 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:16,125 | INFO     | [job] control thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:16,159 | INFO     | [payload] control thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:16,304 | INFO     | [data] copytool_out thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:16,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 18:11:26] 2025-05-25 22:11:16,790 | INFO     | [job] queue monitor thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:20,426 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 18:11:26] 2025-05-25 22:11:20,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641819866944)>', '<ExcThread(monitor, started 139641332168448)>']
[2025-05-25 18:11:26] 2025-05-25 22:11:21,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 18:11:26] 2025-05-25 22:11:21,452 | INFO     | [monitor] control thread has ended
[2025-05-25 18:11:26] 2025-05-25 22:11:25,840 | INFO     | all workflow threads have been joined
[2025-05-25 18:11:26] 2025-05-25 22:11:25,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 18:11:26] 2025-05-25 22:11:25,841 | INFO     | traces error code: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:25,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 18:11:26] 2025-05-25 22:11:26,041 [wrapper] ==== pilot stdout END ====
[2025-05-25 18:11:26] 2025-05-25 22:11:26,080 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 18:11:26] 2025-05-25 22:11:26,087 [wrapper] pilotpid: 1429031
[2025-05-25 18:11:26] 2025-05-25 22:11:26,089 [wrapper] Pilot exit status: 0
[2025-05-25 18:11:26] 2025-05-25 22:11:26,100 [wrapper] pandaids: 6665730271
[2025-05-25 18:11:26] 2025-05-25 22:11:26,207 [wrapper] cleanup supervisor_pilot 3506600 1429032
[2025-05-25 18:11:26] 2025-05-25 22:11:26,221 [wrapper] Test setup, not cleaning
[2025-05-25 18:11:26] 2025-05-25 22:11:26,223 [wrapper] apfmon messages muted
[2025-05-25 18:11:26] 2025-05-25 22:11:26,225 [wrapper] ==== wrapper stdout END ====
[2025-05-25 18:11:26] 2025-05-25 22:11:26,238 [wrapper] ==== wrapper stderr END ====
[2025-05-25 18:11:26]  *** Error codes and diagnostics ***
[2025-05-25 18:11:26]     "exeErrorCode": 0,
[2025-05-25 18:11:26]     "exeErrorDiag": "",
[2025-05-25 18:11:26]     "pilotErrorCode": 0,
[2025-05-25 18:11:26]     "pilotErrorDiag": "",
[2025-05-25 18:11:26]  *** Listing of results directory ***
[2025-05-25 18:11:26] total 420200
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas    495897 May 25 09:49 pilot3.tar.gz
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas      5111 May 25 09:55 queuedata.json
[2025-05-25 18:11:26] -rwx------. 1 boincer umatlas     37140 May 25 09:55 runpilot2-wrapper.sh
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas       100 May 25 15:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 18:11:26] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 15:28 run_atlas
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas       105 May 25 15:28 job.xml
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas 225704567 May 25 15:28 EVNT.44871834._001416.pool.root.1
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas    508877 May 25 15:28 input.tar.gz
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas     15093 May 25 15:28 start_atlas.sh
[2025-05-25 18:11:26] drwxrwx--x. 2 boincer umatlas      4096 May 25 15:28 shared
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas         0 May 25 15:28 boinc_lockfile
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas      2559 May 25 15:28 pandaJob.out
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas    990803 May 25 15:28 agis_schedconf.cvmfs.json
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas   1596740 May 25 15:28 agis_ddmendpoints.agis.ALL.json
[2025-05-25 18:11:26] drwx------. 4 boincer umatlas      4096 May 25 15:28 pilot3
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas 198357723 May 25 18:08 HITS.44871837._035508.pool.root.1
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas       530 May 25 18:08 boinc_task_state.xml
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas        95 May 25 18:10 pilot_heartbeat.json
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas      6932 May 25 18:10 init_data.xml
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas      1045 May 25 18:10 memory_monitor_summary.json
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas    351244 May 25 18:10 log.44871837._035508.job.log.tgz.1
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas      7699 May 25 18:11 heartbeat.json
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas      8192 May 25 18:11 boinc_mmap_file
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas        27 May 25 18:11 wrapper_checkpoint.txt
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas      4353 May 25 18:11 pilotlog.txt
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas    843756 May 25 18:11 log.44871837._035508.job.log.1
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas       357 May 25 18:11 output.list
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas       620 May 25 18:11 runtime_log
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas   1218560 May 25 18:11 result.tar.gz
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas       655 May 25 18:11 RHtLDm5zQd7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5bOKDmvGurWo.diag
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas      8654 May 25 18:11 runtime_log.err
[2025-05-25 18:11:26] -rw-r--r--. 1 boincer umatlas     20874 May 25 18:11 stderr.txt
[2025-05-25 18:11:26] HITS file was successfully produced:
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas 198357723 May 25 18:08 shared/HITS.pool.root.1
[2025-05-25 18:11:26]  *** Contents of shared directory: ***
[2025-05-25 18:11:26] total 415840
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas 225704567 May 25 15:28 ATLAS.root_0
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas    508877 May 25 15:28 input.tar.gz
[2025-05-25 18:11:26] -rw-r--r--. 2 boincer umatlas     15093 May 25 15:28 start_atlas.sh
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas 198357723 May 25 18:08 HITS.pool.root.1
[2025-05-25 18:11:26] -rw-------. 1 boincer umatlas   1218560 May 25 18:11 result.tar.gz
18:11:28 (1411007): run_atlas exited; CPU time 38075.448016
18:11:28 (1411007): called boinc_finish(0)

</stderr_txt>
]]>

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