Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:05:53 (16723): wrapper (7.7.26015): starting
01:05:53 (16723): wrapper: running run_atlas (--nthreads 8)
[2025-05-26 01:05:53] Arguments: --nthreads 8
[2025-05-26 01:05:53] Threads: 8
[2025-05-26 01:05:53] Checking for CVMFS
[2025-05-26 01:05:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-26 01:05:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-26 01:05:54] Running cvmfs_config stat atlas.cern.ch
[2025-05-26 01:05:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-26 01:05:56] 2.11.2.0 347 19408 89436 146417 3 249 21354026 25165825 3085 130560 0 10499656 99.785 12523579 2323 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-26 01:05:56] CVMFS is ok
[2025-05-26 01:05:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-26 01:05:56] Checking for apptainer binary...
[2025-05-26 01:05:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-26 01:05:56] Running /usr/bin/apptainer --version
[2025-05-26 01:05:56] apptainer version 1.3.2-1.el7
[2025-05-26 01:05:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-26 01:10:30] cg-vwn289.simple-grid.lan
[2025-05-26 01:10:30] apptainer works
[2025-05-26 01:10:30] Set ATHENA_PROC_NUMBER=8
[2025-05-26 01:10:30] Set ATHENA_CORE_NUMBER=8
[2025-05-26 01:10:30] Starting ATLAS job with PandaID=6665686009
[2025-05-26 01:10:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-26 06:48:27]  *** The last 200 lines of the pilot log: ***
[2025-05-26 06:48:27] 2025-05-26 04:30:55,886 | INFO     | extracted standard info from prmon json
[2025-05-26 06:48:27] 2025-05-26 04:30:55,886 | INFO     | extracted standard memory fields from prmon json
[2025-05-26 06:48:27] 2025-05-26 04:30:55,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-26 06:48:27] 2025-05-26 04:30:55,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-26 06:48:27] 2025-05-26 04:30:55,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-26 06:48:27] 2025-05-26 04:30:55,895 | INFO     | fitting pss+swap vs Time
[2025-05-26 06:48:27] 2025-05-26 04:30:55,896 | INFO     | sum of square deviations: 8625843592.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,902 | INFO     | sum of deviations: 80794202868.99998
[2025-05-26 06:48:27] 2025-05-26 04:30:55,903 | INFO     | mean x: 1748224517.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,903 | INFO     | mean y: 2471675.1485148515
[2025-05-26 06:48:27] 2025-05-26 04:30:55,903 | INFO     | -- intersect: -16372321674.69333
[2025-05-26 06:48:27] 2025-05-26 04:30:55,903 | INFO     | intersect: -16372321674.69333
[2025-05-26 06:48:27] 2025-05-26 04:30:55,903 | INFO     | chi2: 7.132098173092543
[2025-05-26 06:48:27] 2025-05-26 04:30:55,904 | INFO     | sum of square deviations: 8205826414.5
[2025-05-26 06:48:27] 2025-05-26 04:30:55,910 | INFO     | sum of deviations: 99523411374.00002
[2025-05-26 06:48:27] 2025-05-26 04:30:55,910 | INFO     | mean x: 1748224364.5
[2025-05-26 06:48:27] 2025-05-26 04:30:55,911 | INFO     | mean y: 2478377.6040268457
[2025-05-26 06:48:27] 2025-05-26 04:30:55,911 | INFO     | -- intersect: -21200657517.975945
[2025-05-26 06:48:27] 2025-05-26 04:30:55,911 | INFO     | intersect: -21200657517.975945
[2025-05-26 06:48:27] 2025-05-26 04:30:55,911 | INFO     | chi2: 6.413984333115271
[2025-05-26 06:48:27] 2025-05-26 04:30:55,911 | INFO     | current chi2=6.413984333115271 (change=10.068759887329085 %)
[2025-05-26 06:48:27] 2025-05-26 04:30:55,912 | INFO     | right removable region: 297
[2025-05-26 06:48:27] 2025-05-26 04:30:55,915 | INFO     | sum of square deviations: 8205826414.5
[2025-05-26 06:48:27] 2025-05-26 04:30:55,918 | INFO     | sum of deviations: -24637109165.499992
[2025-05-26 06:48:27] 2025-05-26 04:30:55,918 | INFO     | mean x: 1748224669.5
[2025-05-26 06:48:27] 2025-05-26 04:30:55,919 | INFO     | mean y: 2509927.674496644
[2025-05-26 06:48:27] 2025-05-26 04:30:55,919 | INFO     | -- intersect: 5251366027.30917
[2025-05-26 06:48:27] 2025-05-26 04:30:55,919 | INFO     | intersect: 5251366027.30917
[2025-05-26 06:48:27] 2025-05-26 04:30:55,919 | INFO     | chi2: 2.4275915220673263
[2025-05-26 06:48:27] 2025-05-26 04:30:55,919 | INFO     | current chi2=2.4275915220673263 (change=65.96244943422167 %)
[2025-05-26 06:48:27] 2025-05-26 04:30:55,920 | INFO     | sum of square deviations: 7799669962.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,926 | INFO     | sum of deviations: -76137031050.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,926 | INFO     | mean x: 1748224822.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,926 | INFO     | mean y: 2529170.3924914678
[2025-05-26 06:48:27] 2025-05-26 04:30:55,926 | INFO     | -- intersect: 17067949656.577255
[2025-05-26 06:48:27] 2025-05-26 04:30:55,926 | INFO     | intersect: 17067949656.577255
[2025-05-26 06:48:27] 2025-05-26 04:30:55,927 | INFO     | chi2: 1.0517973963215177
[2025-05-26 06:48:27] 2025-05-26 04:30:55,927 | INFO     | current chi2=1.0517973963215177 (change=56.67321348091497 %)
[2025-05-26 06:48:27] 2025-05-26 04:30:55,928 | INFO     | sum of square deviations: 7407141672.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,933 | INFO     | sum of deviations: -81534658384.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,934 | INFO     | mean x: 1748224974.5
[2025-05-26 06:48:27] 2025-05-26 04:30:55,934 | INFO     | mean y: 2531265.2916666665
[2025-05-26 06:48:27] 2025-05-26 04:30:55,934 | INFO     | -- intersect: 19246246639.74692
[2025-05-26 06:48:27] 2025-05-26 04:30:55,934 | INFO     | intersect: 19246246639.74692
[2025-05-26 06:48:27] 2025-05-26 04:30:55,935 | INFO     | chi2: 1.0216220933261002
[2025-05-26 06:48:27] 2025-05-26 04:30:55,935 | INFO     | current chi2=1.0216220933261002 (change=2.8689273334342213 %)
[2025-05-26 06:48:27] 2025-05-26 04:30:55,935 | INFO     | left removable region: 30
[2025-05-26 06:48:27] 2025-05-26 04:30:55,935 | INFO     | sum of square deviations: 5902093918.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,938 | INFO     | sum of deviations: -34489210960.999985
[2025-05-26 06:48:27] 2025-05-26 04:30:55,938 | INFO     | mean x: 1748225249.0
[2025-05-26 06:48:27] 2025-05-26 04:30:55,938 | INFO     | mean y: 2527932.04494382
[2025-05-26 06:48:27] 2025-05-26 04:30:55,938 | INFO     | -- intersect: 10218378485.731056
[2025-05-26 06:48:27] 2025-05-26 04:30:55,938 | INFO     | intersect: 10218378485.731056
[2025-05-26 06:48:27] 2025-05-26 04:30:55,939 | INFO     | chi2: 0.18888468423863933
[2025-05-26 06:48:27] 2025-05-26 04:30:55,939 | INFO     | -- intersect: 10218378485.731056
[2025-05-26 06:48:27] 2025-05-26 04:30:55,939 | INFO     | current memory leak: -5.84 B/s (using 267 data points, chi2=0.19)
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | ..............................
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . Timing measurements:
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . get job = 0 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . initial setup = 7 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . payload setup = 142 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . stage-in = 0 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,943 | INFO     | . payload execution = 18606 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,944 | INFO     | . stage-out = 3 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,944 | INFO     | . log creation = 1 s
[2025-05-26 06:48:27] 2025-05-26 04:30:55,944 | INFO     | ..............................
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | 
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | job summary report
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | --------------------------------------------------
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | PanDA job id: 6665686009
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | task id: 44871837
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | errors: (none)
[2025-05-26 06:48:27] 2025-05-26 04:30:56,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | pilot state: finished 
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | transexitcode: 0
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | exeerrorcode: 0
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | exeerrordiag: 
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | exitcode: 0
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | exitmsg: OK
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | cpuconsumptiontime: 70576 s
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | nevents: 400
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | neventsw: 0
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | pid: 6883
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | pgrp: 6883
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | corecount: 8
[2025-05-26 06:48:27] 2025-05-26 04:30:56,135 | INFO     | event service: False
[2025-05-26 06:48:27] 2025-05-26 04:30:56,136 | INFO     | sizes: {0: 2393519, 1: 2393718, 12: 2393718, 23: 2393746, 34: 2393774, 44: 2393802, 55: 2393958, 66: 2393986, 77: 2394014, 87: 2394070, 89: 2394304, 98: 2394612, 1
[2025-05-26 06:48:27] 2025-05-26 04:30:56,136 | INFO     | --------------------------------------------------
[2025-05-26 06:48:27] 2025-05-26 04:30:56,136 | INFO     | 
[2025-05-26 06:48:27] 2025-05-26 04:30:56,136 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-26 06:48:27] 2025-05-26 04:30:56,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,632 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-26 06:48:27] 2025-05-26 04:30:56,633 | INFO     | job 6665686009 has completed (purged errors)
[2025-05-26 06:48:27] 2025-05-26 04:30:56,633 | INFO     | overall cleanup function is called
[2025-05-26 06:48:27] 2025-05-26 04:30:57,642 | INFO     | --- collectZombieJob: --- 10, [6883]
[2025-05-26 06:48:27] 2025-05-26 04:30:57,642 | INFO     | zombie collector waiting for pid 6883
[2025-05-26 06:48:27] 2025-05-26 04:30:57,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-26 06:48:27] 2025-05-26 04:30:57,642 | INFO     | collected zombie processes
[2025-05-26 06:48:27] 2025-05-26 04:30:57,642 | INFO     | will attempt to kill all subprocesses of pid=6883
[2025-05-26 06:48:27] 2025-05-26 04:30:57,770 | INFO     | process IDs to be killed: [6883] (in reverse order)
[2025-05-26 06:48:27] 2025-05-26 04:30:58,696 | WARNING  | found no corresponding commands to process id(s)
[2025-05-26 06:48:27] 2025-05-26 04:30:58,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-26 06:48:27] 2025-05-26 04:30:58,700 | INFO     | did not find any defunct processes belonging to 6883
[2025-05-26 06:48:27] 2025-05-26 04:30:58,703 | INFO     | did not find any defunct processes belonging to 6883
[2025-05-26 06:48:27] 2025-05-26 04:30:58,703 | INFO     | ready for new job
[2025-05-26 06:48:27] 2025-05-26 04:30:58,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-26 06:48:27] 2025-05-26 04:30:58,705 | INFO     | **************************************
[2025-05-26 06:48:27] 2025-05-26 04:30:58,705 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-26 06:48:27] 2025-05-26 04:30:58,706 | INFO     | **************************************
[2025-05-26 06:48:27] 2025-05-26 04:30:58,706 | INFO     | 
[2025-05-26 06:48:27] 2025-05-26 04:30:58,706 | INFO     | pilot is running in a VM
[2025-05-26 06:48:27] 2025-05-26 04:30:58,706 | INFO     | architecture information:
[2025-05-26 06:48:27] 2025-05-26 04:30:58,719 | INFO     | executing command: cat /etc/os-release
[2025-05-26 06:48:27] 2025-05-26 04:30:58,958 | INFO     | cat /etc/os-release:
[2025-05-26 06:48:27] NAME="CentOS Linux"
[2025-05-26 06:48:27] VERSION="7 (Core)"
[2025-05-26 06:48:27] ID="centos"
[2025-05-26 06:48:27] ID_LIKE="rhel fedora"
[2025-05-26 06:48:27] VERSION_ID="7"
[2025-05-26 06:48:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-26 06:48:27] ANSI_COLOR="0;31"
[2025-05-26 06:48:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-26 06:48:27] HOME_URL="https://www.centos.org/"
[2025-05-26 06:48:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-26 06:48:27] 
[2025-05-26 06:48:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-26 06:48:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-26 06:48:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-26 06:48:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-26 06:48:27] 
[2025-05-26 06:48:27] 2025-05-26 04:30:58,958 | INFO     | **************************************
[2025-05-26 06:48:27] 2025-05-26 04:30:59,462 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-26 06:48:27] 2025-05-26 04:30:59,645 | INFO     | sufficient remaining disk space (492645122048 B)
[2025-05-26 06:48:27] 2025-05-26 04:30:59,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-26 06:48:27] 2025-05-26 04:30:59,646 | INFO     | current server update state: UPDATING_FINAL
[2025-05-26 06:48:27] 2025-05-26 04:30:59,646 | INFO     | update_server=False
[2025-05-26 06:48:27] 2025-05-26 04:30:59,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-26 06:48:27] 2025-05-26 04:30:59,652 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-26 06:48:27] 2025-05-26 04:30:59,652 | INFO     | found 0 job(s) in 20 queues
[2025-05-26 06:48:27] 2025-05-26 04:30:59,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-26 06:48:27] 2025-05-26 04:30:59,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-26 06:48:27] 2025-05-26 04:30:59,715 | INFO     | all payload control threads have been joined
[2025-05-26 06:48:27] 2025-05-26 04:31:00,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-26 06:48:27] 2025-05-26 04:31:00,442 | INFO     | all data control threads have been joined
[2025-05-26 06:48:27] 2025-05-26 04:31:00,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-26 06:48:27] 2025-05-26 04:31:00,618 | INFO     | aborting loop
[2025-05-26 06:48:27] 2025-05-26 04:31:00,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-26 06:48:27] 2025-05-26 04:31:00,652 | INFO     | [job] retrieve thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:00,721 | INFO     | [payload] control thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:00,788 | INFO     | all job control threads have been joined
[2025-05-26 06:48:27] 2025-05-26 04:31:00,799 | INFO     | [payload] failed_post thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,050 | INFO     | [job] validate thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-26 06:48:27] 2025-05-26 04:31:01,284 | INFO     | [job] create_data_payload thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,315 | INFO     | [payload] execute_payloads thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,447 | INFO     | [data] control thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,570 | INFO     | [data] copytool_in thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,623 | INFO     | [job] job monitor thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,713 | INFO     | [payload] validate_pre thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:01,794 | INFO     | [job] control thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:02,018 | INFO     | [data] copytool_out thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:02,154 | INFO     | [job] queue monitor thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:02,235 | INFO     | [payload] validate_post thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:04,659 | INFO     | [data] queue_monitor thread has finished
[2025-05-26 06:48:27] 2025-05-26 04:31:04,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444818929472)>', '<ExcThread(monitor, started 140444080006912)>']
[2025-05-26 06:48:27] 2025-05-26 04:31:05,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-26 06:48:27] 2025-05-26 04:31:05,688 | INFO     | [monitor] control thread has ended
[2025-05-26 06:48:27] 2025-05-26 04:31:09,934 | INFO     | all workflow threads have been joined
[2025-05-26 06:48:27] 2025-05-26 04:31:09,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-26 06:48:27] 2025-05-26 04:31:09,934 | INFO     | traces error code: 0
[2025-05-26 06:48:27] 2025-05-26 04:31:09,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-26 06:48:27] 2025-05-26 04:31:10,147 [wrapper] ==== pilot stdout END ====
[2025-05-26 06:48:27] 2025-05-26 04:31:10,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-26 06:48:27] 2025-05-26 04:31:10,293 [wrapper] pilotpid: 28675
[2025-05-26 06:48:27] 2025-05-26 04:31:10,328 [wrapper] Pilot exit status: 0
[2025-05-26 06:48:27] 2025-05-26 04:31:10,584 [wrapper] pandaids: 6665686009
[2025-05-26 06:48:27] 2025-05-26 04:31:11,519 [wrapper] cleanup supervisor_pilot  7232 28676
[2025-05-26 06:48:27] 2025-05-26 04:31:11,611 [wrapper] Test setup, not cleaning
[2025-05-26 06:48:27] 2025-05-26 04:31:11,687 [wrapper] apfmon messages muted
[2025-05-26 06:48:27] 2025-05-26 04:31:11,778 [wrapper] ==== wrapper stdout END ====
[2025-05-26 06:48:27] 2025-05-26 04:31:11,824 [wrapper] ==== wrapper stderr END ====
[2025-05-26 06:48:27]  *** Error codes and diagnostics ***
[2025-05-26 06:48:27]     "exeErrorCode": 0,
[2025-05-26 06:48:27]     "exeErrorDiag": "",
[2025-05-26 06:48:27]     "pilotErrorCode": 0,
[2025-05-26 06:48:27]     "pilotErrorDiag": "",
[2025-05-26 06:48:27]  *** Listing of results directory ***
[2025-05-26 06:48:27] total 419740
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc    495897 May 25 03:25 pilot3.tar.gz
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc      5111 May 25 03:32 queuedata.json
[2025-05-26 06:48:27] -rwx------. 1 boinc boinc     37140 May 25 03:32 runpilot2-wrapper.sh
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc       100 May 26 01:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-26 06:48:27] -rwxr-xr-x. 1 boinc boinc      7986 May 26 01:05 run_atlas
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc       105 May 26 01:05 job.xml
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc      6371 May 26 01:05 init_data.xml
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc 222649860 May 26 01:05 EVNT.44871834._001079.pool.root.1
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc     15093 May 26 01:05 start_atlas.sh
[2025-05-26 06:48:27] drwxrwx--x. 2 boinc boinc        68 May 26 01:05 shared
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc    508872 May 26 01:05 input.tar.gz
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc         0 May 26 01:05 boinc_lockfile
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc      2558 May 26 01:10 pandaJob.out
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc    990795 May 26 01:13 agis_schedconf.cvmfs.json
[2025-05-26 06:48:27] drwx------. 4 boinc boinc      4096 May 26 01:13 pilot3
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc 199274470 May 26 06:27 HITS.44871837._027062.pool.root.1
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc       531 May 26 06:28 boinc_task_state.xml
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc      1016 May 26 06:29 memory_monitor_summary.json
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc   1596740 May 26 06:29 agis_ddmendpoints.agis.ALL.json
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc    422437 May 26 06:29 log.44871837._027062.job.log.tgz.1
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc        95 May 26 06:30 pilot_heartbeat.json
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc      7691 May 26 06:30 heartbeat.json
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc      4539 May 26 06:31 pilotlog.txt
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc   1611318 May 26 06:31 log.44871837._027062.job.log.1
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc       357 May 26 06:31 output.list
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc       620 May 26 06:31 runtime_log
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc   2058240 May 26 06:31 result.tar.gz
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc      8659 May 26 06:31 runtime_log.err
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc       657 May 26 06:31 ddWLDmrOFd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOeNKDmlPO3Om.diag
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc      8192 May 26 06:48 boinc_mmap_file
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc        28 May 26 06:48 wrapper_checkpoint.txt
[2025-05-26 06:48:27] -rw-r--r--. 1 boinc boinc     20504 May 26 06:48 stderr.txt
[2025-05-26 06:48:27] HITS file was successfully produced:
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc 199274470 May 26 06:27 shared/HITS.pool.root.1
[2025-05-26 06:48:27]  *** Contents of shared directory: ***
[2025-05-26 06:48:27] total 414564
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc 222649860 May 26 01:05 ATLAS.root_0
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc     15093 May 26 01:05 start_atlas.sh
[2025-05-26 06:48:27] -rw-r--r--. 2 boinc boinc    508872 May 26 01:05 input.tar.gz
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc 199274470 May 26 06:27 HITS.pool.root.1
[2025-05-26 06:48:27] -rw-------. 1 boinc boinc   2058240 May 26 06:31 result.tar.gz
06:48:29 (16723): run_atlas exited; CPU time 70837.154885
06:48:29 (16723): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN