Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:09:46 (147486): wrapper (7.7.26015): starting
09:09:46 (147486): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 09:09:46] Arguments: --nthreads 8
[2025-05-25 09:09:46] Threads: 8
[2025-05-25 09:09:46] Checking for CVMFS
[2025-05-25 09:09:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 09:09:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 09:09:47] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 09:09:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 09:09:48] 2.12.6.0 7887 22951 525004 146402 2 790 24346135 32935937 39260 16776704 0 224780573 99.690 182403582 22692 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 09:09:48] CVMFS is ok
[2025-05-25 09:09:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 09:09:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 09:09:48] Further information can be found at the LHC@home message board.
[2025-05-25 09:09:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 09:09:48] Checking for apptainer binary...
[2025-05-25 09:09:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 09:09:48] Running /usr/bin/apptainer --version
[2025-05-25 09:09:48] apptainer version 1.4.1-1.el9
[2025-05-25 09:09:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 09:09:48] c7-3-28.aglt2.org
[2025-05-25 09:09:48] apptainer works
[2025-05-25 09:09:48] Set ATHENA_PROC_NUMBER=8
[2025-05-25 09:09:48] Set ATHENA_CORE_NUMBER=8
[2025-05-25 09:09:48] Starting ATLAS job with PandaID=6665714846
[2025-05-25 09:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 16:02:35]  *** The last 200 lines of the pilot log: ***
[2025-05-25 16:02:35] 2025-05-25 20:02:16,744 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 16:02:35] 2025-05-25 20:02:16,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 16:02:35] 2025-05-25 20:02:16,744 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 16:02:35] 2025-05-25 20:02:16,744 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 16:02:35] 2025-05-25 20:02:16,749 | INFO     | fitting pss+swap vs Time
[2025-05-25 16:02:35] 2025-05-25 20:02:16,749 | INFO     | sum of square deviations: 20295579963.776794
[2025-05-25 16:02:35] 2025-05-25 20:02:16,752 | INFO     | sum of deviations: 63338520177.76934
[2025-05-25 16:02:35] 2025-05-25 20:02:16,752 | INFO     | mean x: 1748191027.1811414
[2025-05-25 16:02:35] 2025-05-25 20:02:16,752 | INFO     | mean y: 2087528.1538461538
[2025-05-25 16:02:35] 2025-05-25 20:02:16,752 | INFO     | -- intersect: -5453673423.114025
[2025-05-25 16:02:35] 2025-05-25 20:02:16,752 | INFO     | intersect: -5453673423.114025
[2025-05-25 16:02:35] 2025-05-25 20:02:16,753 | INFO     | chi2: 5.080016843916708
[2025-05-25 16:02:35] 2025-05-25 20:02:16,753 | INFO     | sum of square deviations: 19549507720.474808
[2025-05-25 16:02:35] 2025-05-25 20:02:16,756 | INFO     | sum of deviations: 96356878070.91716
[2025-05-25 16:02:35] 2025-05-25 20:02:16,756 | INFO     | mean x: 1748190874.6809046
[2025-05-25 16:02:35] 2025-05-25 20:02:16,756 | INFO     | mean y: 2094234.8969849246
[2025-05-25 16:02:35] 2025-05-25 20:02:16,756 | INFO     | -- intersect: -8614502017.288681
[2025-05-25 16:02:35] 2025-05-25 20:02:16,757 | INFO     | intersect: -8614502017.288681
[2025-05-25 16:02:35] 2025-05-25 20:02:16,757 | INFO     | chi2: 4.245836889575134
[2025-05-25 16:02:35] 2025-05-25 20:02:16,757 | INFO     | current chi2=4.245836889575134 (change=16.420810795942526 %)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,757 | INFO     | right removable region: 397
[2025-05-25 16:02:35] 2025-05-25 20:02:16,757 | INFO     | sum of square deviations: 19549487896.110554
[2025-05-25 16:02:35] 2025-05-25 20:02:16,760 | INFO     | sum of deviations: -37541618160.698494
[2025-05-25 16:02:35] 2025-05-25 20:02:16,760 | INFO     | mean x: 1748191179.683417
[2025-05-25 16:02:35] 2025-05-25 20:02:16,760 | INFO     | mean y: 2108119.9547738694
[2025-05-25 16:02:35] 2025-05-25 20:02:16,760 | INFO     | -- intersect: 3359225507.803753
[2025-05-25 16:02:35] 2025-05-25 20:02:16,761 | INFO     | intersect: 3359225507.803753
[2025-05-25 16:02:35] 2025-05-25 20:02:16,761 | INFO     | chi2: 1.7186076325278297
[2025-05-25 16:02:35] 2025-05-25 20:02:16,761 | INFO     | current chi2=1.7186076325278297 (change=66.16925326564905 %)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,761 | INFO     | sum of square deviations: 18821907803.440166
[2025-05-25 16:02:35] 2025-05-25 20:02:16,764 | INFO     | sum of deviations: -70262262662.40204
[2025-05-25 16:02:35] 2025-05-25 20:02:16,764 | INFO     | mean x: 1748191332.1857507
[2025-05-25 16:02:35] 2025-05-25 20:02:16,764 | INFO     | mean y: 2114952.1424936387
[2025-05-25 16:02:35] 2025-05-25 20:02:16,764 | INFO     | -- intersect: 6528120702.936747
[2025-05-25 16:02:35] 2025-05-25 20:02:16,764 | INFO     | intersect: 6528120702.936747
[2025-05-25 16:02:35] 2025-05-25 20:02:16,765 | INFO     | chi2: 1.2633173323207578
[2025-05-25 16:02:35] 2025-05-25 20:02:16,765 | INFO     | current chi2=1.2633173323207578 (change=26.491811835922313 %)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,765 | INFO     | sum of square deviations: 18112607123.265514
[2025-05-25 16:02:35] 2025-05-25 20:02:16,768 | INFO     | sum of deviations: -73480383093.21652
[2025-05-25 16:02:35] 2025-05-25 20:02:16,768 | INFO     | mean x: 1748191484.6881444
[2025-05-25 16:02:35] 2025-05-25 20:02:16,768 | INFO     | mean y: 2115632.8659793814
[2025-05-25 16:02:35] 2025-05-25 20:02:16,768 | INFO     | -- intersect: 7094290665.480734
[2025-05-25 16:02:35] 2025-05-25 20:02:16,768 | INFO     | intersect: 7094290665.480734
[2025-05-25 16:02:35] 2025-05-25 20:02:16,769 | INFO     | chi2: 1.2139604661647034
[2025-05-25 16:02:35] 2025-05-25 20:02:16,769 | INFO     | current chi2=1.2139604661647034 (change=3.906925433009307 %)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,769 | INFO     | left removable region: 30
[2025-05-25 16:02:35] 2025-05-25 20:02:16,769 | INFO     | sum of square deviations: 15328007628.02727
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | sum of deviations: -18331932140.01638
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | mean x: 1748191759.188011
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | mean y: 2119157.0871934607
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | -- intersect: 2092914873.9793992
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | intersect: 2092914873.9793992
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | chi2: 0.3005448086258267
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | -- intersect: 2092914873.9793992
[2025-05-25 16:02:35] 2025-05-25 20:02:16,772 | INFO     | current memory leak: -1.20 B/s (using 367 data points, chi2=0.30)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | ..............................
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . Timing measurements:
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . get job = 0 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . initial setup = 3 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . payload setup = 60 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . stage-in = 0 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,773 | INFO     | . payload execution = 24561 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,774 | INFO     | . stage-out = 4 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,774 | INFO     | . log creation = 0 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,774 | INFO     | ..............................
[2025-05-25 16:02:35] 2025-05-25 20:02:16,801 | INFO     | PID=168966 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-25 16:02:35] 2025-05-25 20:02:16,801 | INFO     | .. there are 50 such processes running
[2025-05-25 16:02:35] 2025-05-25 20:02:16,855 | INFO     | 
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | job summary report
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | --------------------------------------------------
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | PanDA job id: 6665714846
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | task id: 44871837
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | errors: (none)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | pilot state: finished 
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | transexitcode: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | exeerrorcode: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:16,856 | INFO     | exeerrordiag: 
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | exitcode: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | exitmsg: OK
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | cpuconsumptiontime: 38364 s
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | nevents: 400
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | neventsw: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | pid: 199180
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | pgrp: 199180
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | corecount: 8
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | event service: False
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | sizes: {0: 2393741, 11: 2393741, 17: 2393975, 22: 2394003, 24625: 2428772, 24631: 2437713, 24633: 2437897, 24656: 2438067}
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | --------------------------------------------------
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | 
[2025-05-25 16:02:35] 2025-05-25 20:02:16,857 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-25 16:02:35] 2025-05-25 20:02:16,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | job 6665714846 has completed (purged errors)
[2025-05-25 16:02:35] 2025-05-25 20:02:16,947 | INFO     | overall cleanup function is called
[2025-05-25 16:02:35] 2025-05-25 20:02:17,976 | INFO     | --- collectZombieJob: --- 10, [199180]
[2025-05-25 16:02:35] 2025-05-25 20:02:17,976 | INFO     | zombie collector waiting for pid 199180
[2025-05-25 16:02:35] 2025-05-25 20:02:17,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 16:02:35] 2025-05-25 20:02:17,976 | INFO     | collected zombie processes
[2025-05-25 16:02:35] 2025-05-25 20:02:17,976 | INFO     | will attempt to kill all subprocesses of pid=199180
[2025-05-25 16:02:35] 2025-05-25 20:02:18,588 | INFO     | process IDs to be killed: [199180] (in reverse order)
[2025-05-25 16:02:35] 2025-05-25 20:02:18,958 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 16:02:35] 2025-05-25 20:02:18,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 16:02:35] 2025-05-25 20:02:18,989 | INFO     | did not find any defunct processes belonging to 199180
[2025-05-25 16:02:35] 2025-05-25 20:02:19,014 | INFO     | did not find any defunct processes belonging to 199180
[2025-05-25 16:02:35] 2025-05-25 20:02:19,015 | INFO     | ready for new job
[2025-05-25 16:02:35] 2025-05-25 20:02:19,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 16:02:35] 2025-05-25 20:02:19,017 | INFO     | **************************************
[2025-05-25 16:02:35] 2025-05-25 20:02:19,017 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 16:02:35] 2025-05-25 20:02:19,017 | INFO     | **************************************
[2025-05-25 16:02:35] 2025-05-25 20:02:19,017 | INFO     | 
[2025-05-25 16:02:35] 2025-05-25 20:02:19,043 | INFO     | architecture information:
[2025-05-25 16:02:35] 2025-05-25 20:02:19,068 | INFO     | executing command: cat /etc/os-release
[2025-05-25 16:02:35] 2025-05-25 20:02:19,110 | INFO     | cat /etc/os-release:
[2025-05-25 16:02:35] NAME="CentOS Linux"
[2025-05-25 16:02:35] VERSION="7 (Core)"
[2025-05-25 16:02:35] ID="centos"
[2025-05-25 16:02:35] ID_LIKE="rhel fedora"
[2025-05-25 16:02:35] VERSION_ID="7"
[2025-05-25 16:02:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 16:02:35] ANSI_COLOR="0;31"
[2025-05-25 16:02:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 16:02:35] HOME_URL="https://www.centos.org/"
[2025-05-25 16:02:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 16:02:35] 
[2025-05-25 16:02:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 16:02:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 16:02:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 16:02:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 16:02:35] 
[2025-05-25 16:02:35] 2025-05-25 20:02:19,111 | INFO     | **************************************
[2025-05-25 16:02:35] 2025-05-25 20:02:19,613 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-25 16:02:35] 2025-05-25 20:02:19,678 | INFO     | sufficient remaining disk space (73815556096 B)
[2025-05-25 16:02:35] 2025-05-25 20:02:19,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 16:02:35] 2025-05-25 20:02:19,678 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 16:02:35] 2025-05-25 20:02:19,678 | INFO     | update_server=False
[2025-05-25 16:02:35] 2025-05-25 20:02:19,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 16:02:35] 2025-05-25 20:02:19,679 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 16:02:35] 2025-05-25 20:02:19,679 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 16:02:35] 2025-05-25 20:02:19,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 16:02:35] 2025-05-25 20:02:19,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 16:02:35] 2025-05-25 20:02:19,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 16:02:35] 2025-05-25 20:02:19,680 | INFO     | aborting loop
[2025-05-25 16:02:35] 2025-05-25 20:02:20,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 16:02:35] 2025-05-25 20:02:20,177 | INFO     | all payload control threads have been joined
[2025-05-25 16:02:35] 2025-05-25 20:02:20,433 | INFO     | all data control threads have been joined
[2025-05-25 16:02:35] 2025-05-25 20:02:20,684 | INFO     | [job] retrieve thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:20,686 | INFO     | [job] job monitor thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:20,745 | INFO     | [job] validate thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:20,940 | INFO     | [payload] failed_post thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:20,980 | INFO     | all job control threads have been joined
[2025-05-25 16:02:35] 2025-05-25 20:02:21,190 | INFO     | [payload] control thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,225 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,285 | INFO     | [data] copytool_in thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,439 | INFO     | [data] control thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,571 | INFO     | [payload] validate_post thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 16:02:35] 2025-05-25 20:02:21,977 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:21,986 | INFO     | [job] control thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:22,069 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:22,091 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:22,149 | INFO     | [data] copytool_out thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:22,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 16:02:35] 2025-05-25 20:02:22,874 | INFO     | [job] queue monitor thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:26,809 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 16:02:35] 2025-05-25 20:02:28,642 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742946625344)>', '<ExcThread(monitor, started 139742280652544)>']
[2025-05-25 16:02:35] 2025-05-25 20:02:28,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 16:02:35] 2025-05-25 20:02:28,738 | INFO     | [monitor] control thread has ended
[2025-05-25 16:02:35] 2025-05-25 20:02:33,669 | INFO     | all workflow threads have been joined
[2025-05-25 16:02:35] 2025-05-25 20:02:33,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 16:02:35] 2025-05-25 20:02:33,669 | INFO     | traces error code: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:33,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 16:02:35] 2025-05-25 20:02:33,896 [wrapper] ==== pilot stdout END ====
[2025-05-25 16:02:35] 2025-05-25 20:02:33,912 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 16:02:35] 2025-05-25 20:02:33,952 [wrapper] pilotpid: 168966
[2025-05-25 16:02:35] 2025-05-25 20:02:33,956 [wrapper] Pilot exit status: 0
[2025-05-25 16:02:35] 2025-05-25 20:02:34,001 [wrapper] pandaids: 6665714846
[2025-05-25 16:02:35] 2025-05-25 20:02:34,356 [wrapper] cleanup supervisor_pilot 2598465 168967
[2025-05-25 16:02:35] 2025-05-25 20:02:34,385 [wrapper] Test setup, not cleaning
[2025-05-25 16:02:35] 2025-05-25 20:02:34,455 [wrapper] apfmon messages muted
[2025-05-25 16:02:35] 2025-05-25 20:02:34,495 [wrapper] ==== wrapper stdout END ====
[2025-05-25 16:02:35] 2025-05-25 20:02:34,509 [wrapper] ==== wrapper stderr END ====
[2025-05-25 16:02:35]  *** Error codes and diagnostics ***
[2025-05-25 16:02:35]     "exeErrorCode": 0,
[2025-05-25 16:02:35]     "exeErrorDiag": "",
[2025-05-25 16:02:35]     "pilotErrorCode": 0,
[2025-05-25 16:02:35]     "pilotErrorDiag": "",
[2025-05-25 16:02:35]  *** Listing of results directory ***
[2025-05-25 16:02:35] total 412668
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas    495897 May 24 22:54 pilot3.tar.gz
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas      5111 May 24 23:00 queuedata.json
[2025-05-25 16:02:35] -rwx------. 1 boincer umatlas     37140 May 24 23:00 runpilot2-wrapper.sh
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas       100 May 25 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 16:02:35] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 09:09 run_atlas
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas       105 May 25 09:09 job.xml
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas 222974578 May 25 09:09 EVNT.44871834._001120.pool.root.1
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas     15093 May 25 09:09 start_atlas.sh
[2025-05-25 16:02:35] drwxrwx--x. 2 boincer umatlas      4096 May 25 09:09 shared
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas    508878 May 25 09:09 input.tar.gz
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas         0 May 25 09:09 boinc_lockfile
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas      2559 May 25 09:09 pandaJob.out
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas    990811 May 25 09:10 agis_schedconf.cvmfs.json
[2025-05-25 16:02:35] drwx------. 4 boincer umatlas      4096 May 25 09:10 pilot3
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas 191107014 May 25 16:00 HITS.44871837._028097.pool.root.1
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas       530 May 25 16:00 boinc_task_state.xml
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas      1046 May 25 16:01 memory_monitor_summary.json
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas        95 May 25 16:01 pilot_heartbeat.json
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas   1596740 May 25 16:01 agis_ddmendpoints.agis.ALL.json
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas    472447 May 25 16:01 log.44871837._028097.job.log.tgz.1
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas      7716 May 25 16:02 heartbeat.json
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas      6933 May 25 16:02 init_data.xml
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas        28 May 25 16:02 wrapper_checkpoint.txt
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas      4476 May 25 16:02 pilotlog.txt
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas      8192 May 25 16:02 boinc_mmap_file
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas   1857750 May 25 16:02 log.44871837._028097.job.log.1
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas       357 May 25 16:02 output.list
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas       620 May 25 16:02 runtime_log
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas   2344960 May 25 16:02 result.tar.gz
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas      8655 May 25 16:02 runtime_log.err
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas       660 May 25 16:02 48oKDmpmGd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmsjNKDmtA773n.diag
[2025-05-25 16:02:35] -rw-r--r--. 1 boincer umatlas     20999 May 25 16:02 stderr.txt
[2025-05-25 16:02:35] HITS file was successfully produced:
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas 191107014 May 25 16:00 shared/HITS.pool.root.1
[2025-05-25 16:02:35]  *** Contents of shared directory: ***
[2025-05-25 16:02:35] total 407196
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas 222974578 May 25 09:09 ATLAS.root_0
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas     15093 May 25 09:09 start_atlas.sh
[2025-05-25 16:02:35] -rw-r--r--. 2 boincer umatlas    508878 May 25 09:09 input.tar.gz
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas 191107014 May 25 16:00 HITS.pool.root.1
[2025-05-25 16:02:35] -rw-------. 1 boincer umatlas   2344960 May 25 16:02 result.tar.gz
16:02:36 (147486): run_atlas exited; CPU time 39416.183921
16:02:36 (147486): called boinc_finish(0)

</stderr_txt>
]]>

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