Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:26:47 (4016140): wrapper (7.7.26015): starting
08:26:47 (4016140): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 08:26:47] Arguments: --nthreads 8
[2025-05-25 08:26:47] Threads: 8
[2025-05-25 08:26:47] Checking for CVMFS
[2025-05-25 08:26:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 08:26:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 08:26:47] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 08:26:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 08:26:48] 2.12.6.0 4868 22912 355616 146402 2 369 24708632 32935936 33969 16776704 0 192988060 99.666 170312810 22040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 08:26:48] CVMFS is ok
[2025-05-25 08:26:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 08:26:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 08:26:48] Further information can be found at the LHC@home message board.
[2025-05-25 08:26:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 08:26:48] Checking for apptainer binary...
[2025-05-25 08:26:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 08:26:48] Running /usr/bin/apptainer --version
[2025-05-25 08:26:48] apptainer version 1.4.1-1.el9
[2025-05-25 08:26:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 08:26:49] c7-3-34.aglt2.org
[2025-05-25 08:26:49] apptainer works
[2025-05-25 08:26:49] Set ATHENA_PROC_NUMBER=8
[2025-05-25 08:26:49] Set ATHENA_CORE_NUMBER=8
[2025-05-25 08:26:49] Starting ATLAS job with PandaID=6665685602
[2025-05-25 08:26:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:40:08 (4016140): BOINC client no longer exists - exiting
08:40:08 (4016140): timer handler: client dead, exiting
08:48:07 (111678): wrapper (7.7.26015): starting
08:48:07 (111678): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 08:48:07] Arguments: --nthreads 8
[2025-05-25 08:48:07] Threads: 8
[2025-05-25 08:48:07] This job has been restarted, cleaning up previous attempt
[2025-05-25 08:48:07] Checking for CVMFS
[2025-05-25 08:48:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 08:48:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 08:48:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 08:48:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 08:48:08] 2.12.6.0 4868 22933 374800 146402 0 722 25163456 32935937 29140 16776704 0 193431482 99.667 170440766 22031 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 08:48:08] CVMFS is ok
[2025-05-25 08:48:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 08:48:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 08:48:08] Further information can be found at the LHC@home message board.
[2025-05-25 08:48:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 08:48:08] Checking for apptainer binary...
[2025-05-25 08:48:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 08:48:08] Running /usr/bin/apptainer --version
[2025-05-25 08:48:08] apptainer version 1.4.1-1.el9
[2025-05-25 08:48:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 08:48:08] c7-3-34.aglt2.org
[2025-05-25 08:48:08] apptainer works
[2025-05-25 08:48:08] Set ATHENA_PROC_NUMBER=8
[2025-05-25 08:48:08] Set ATHENA_CORE_NUMBER=8
[2025-05-25 08:48:08] Starting ATLAS job with PandaID=6665685602
[2025-05-25 08:48:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 12:43:36]  *** The last 200 lines of the pilot log: ***
[2025-05-25 12:43:36] 2025-05-25 16:43:12,612 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6665685602/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 12:43:36] 2025-05-25 16:43:12,613 | INFO     | extracted standard info from prmon json
[2025-05-25 12:43:36] 2025-05-25 16:43:12,613 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 12:43:36] 2025-05-25 16:43:12,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 12:43:36] 2025-05-25 16:43:12,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 12:43:36] 2025-05-25 16:43:12,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 12:43:36] 2025-05-25 16:43:12,815 | INFO     | fitting pss+swap vs Time
[2025-05-25 12:43:36] 2025-05-25 16:43:12,815 | INFO     | sum of square deviations: 3772772883.760859
[2025-05-25 12:43:36] 2025-05-25 16:43:12,817 | INFO     | sum of deviations: 20398384771.043438
[2025-05-25 12:43:36] 2025-05-25 16:43:12,817 | INFO     | mean x: 1748184363.5869565
[2025-05-25 12:43:36] 2025-05-25 16:43:12,817 | INFO     | mean y: 2085938.5478260869
[2025-05-25 12:43:36] 2025-05-25 16:43:12,817 | INFO     | -- intersect: -9449884375.557302
[2025-05-25 12:43:36] 2025-05-25 16:43:12,817 | INFO     | intersect: -9449884375.557302
[2025-05-25 12:43:36] 2025-05-25 16:43:12,818 | INFO     | chi2: 4.0694076751958805
[2025-05-25 12:43:36] 2025-05-25 16:43:12,818 | INFO     | sum of square deviations: 3532039586.2222137
[2025-05-25 12:43:36] 2025-05-25 16:43:12,909 | INFO     | sum of deviations: 59408285241.4222
[2025-05-25 12:43:36] 2025-05-25 16:43:12,909 | INFO     | mean x: 1748184211.088889
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | mean y: 2110463.328888889
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | -- intersect: -29402040801.578636
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | intersect: -29402040801.578636
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | chi2: 1.8324957735060174
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | current chi2=1.8324957735060174 (change=54.96898026030753 %)
[2025-05-25 12:43:36] 2025-05-25 16:43:12,910 | INFO     | sum of square deviations: 3301743905.527294
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | sum of deviations: 59842295632.981705
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | mean x: 1748184058.581818
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | mean y: 2110744.9454545453
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | -- intersect: -31682765565.23334
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | intersect: -31682765565.23334
[2025-05-25 12:43:36] 2025-05-25 16:43:12,912 | INFO     | chi2: 1.8212636616243307
[2025-05-25 12:43:36] 2025-05-25 16:43:12,980 | INFO     | current chi2=1.8212636616243307 (change=0.6129406705368223 %)
[2025-05-25 12:43:36] 2025-05-25 16:43:12,981 | INFO     | right removable region: 219
[2025-05-25 12:43:36] 2025-05-25 16:43:12,981 | INFO     | sum of square deviations: 3532027386.2222137
[2025-05-25 12:43:36] 2025-05-25 16:43:12,982 | INFO     | sum of deviations: -16771770460.088894
[2025-05-25 12:43:36] 2025-05-25 16:43:12,982 | INFO     | mean x: 1748184516.088889
[2025-05-25 12:43:36] 2025-05-25 16:43:12,982 | INFO     | mean y: 2109329.2044444443
[2025-05-25 12:43:36] 2025-05-25 16:43:12,982 | INFO     | -- intersect: 8303333023.023159
[2025-05-25 12:43:36] 2025-05-25 16:43:12,983 | INFO     | intersect: 8303333023.023159
[2025-05-25 12:43:36] 2025-05-25 16:43:12,983 | INFO     | chi2: 2.3916856501962274
[2025-05-25 12:43:36] 2025-05-25 16:43:12,983 | INFO     | current chi2=2.3916856501962274 (change=41.22767141827087 %)
[2025-05-25 12:43:36] 2025-05-25 16:43:12,983 | INFO     | sum of square deviations: 3301747201.181835
[2025-05-25 12:43:36] 2025-05-25 16:43:13,057 | INFO     | sum of deviations: -19325156700.45455
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | mean x: 1748184668.590909
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | mean y: 2111018.3727272726
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | -- intersect: 10234251943.564947
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | intersect: 10234251943.564947
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | chi2: 2.3874819903542015
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | current chi2=2.3874819903542015 (change=0.1757613857691111 %)
[2025-05-25 12:43:36] 2025-05-25 16:43:13,058 | INFO     | left removable region: 20
[2025-05-25 12:43:36] 2025-05-25 16:43:13,059 | INFO     | sum of square deviations: 2443604626.7135706
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | sum of deviations: 18619860567.728645
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | mean x: 1748184638.080402
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | mean y: 2138911.391959799
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | -- intersect: -13318737081.33374
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | intersect: -13318737081.33374
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | chi2: 0.08494987012995965
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | -- intersect: -13318737081.33374
[2025-05-25 12:43:36] 2025-05-25 16:43:13,060 | INFO     | current memory leak: 7.62 B/s (using 199 data points, chi2=0.08)
[2025-05-25 12:43:36] 2025-05-25 16:43:13,061 | INFO     | ..............................
[2025-05-25 12:43:36] 2025-05-25 16:43:13,061 | INFO     | . Timing measurements:
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . get job = 0 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . initial setup = 1 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . payload setup = 18 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . stage-in = 0 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . payload execution = 13994 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . stage-out = 9 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | . log creation = 1 s
[2025-05-25 12:43:36] 2025-05-25 16:43:13,142 | INFO     | ..............................
[2025-05-25 12:43:36] 2025-05-25 16:43:14,744 | INFO     | 
[2025-05-25 12:43:36] 2025-05-25 16:43:14,744 | INFO     | job summary report
[2025-05-25 12:43:36] 2025-05-25 16:43:14,744 | INFO     | --------------------------------------------------
[2025-05-25 12:43:36] 2025-05-25 16:43:14,744 | INFO     | PanDA job id: 6665685602
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | task id: 44871837
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | errors: (none)
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | pilot state: finished 
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | transexitcode: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | exeerrorcode: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | exeerrordiag: 
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | exitcode: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | exitmsg: OK
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | cpuconsumptiontime: 40148 s
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | nevents: 400
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | neventsw: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | pid: 182413
[2025-05-25 12:43:36] 2025-05-25 16:43:14,745 | INFO     | pgrp: 182413
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | corecount: 8
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | event service: False
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | sizes: {0: 2392912, 1: 2393768, 2: 2393768, 13: 2394058, 23: 2394058, 14016: 2423983, 14026: 2432924, 14027: 2432980, 14050: 2433150}
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | --------------------------------------------------
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | 
[2025-05-25 12:43:36] 2025-05-25 16:43:14,746 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-25 12:43:36] 2025-05-25 16:43:15,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 12:43:36] 2025-05-25 16:43:15,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 12:43:36] 2025-05-25 16:43:15,030 | INFO     | job 6665685602 has completed (purged errors)
[2025-05-25 12:43:36] 2025-05-25 16:43:15,030 | INFO     | overall cleanup function is called
[2025-05-25 12:43:36] 2025-05-25 16:43:16,117 | INFO     | --- collectZombieJob: --- 10, [182413]
[2025-05-25 12:43:36] 2025-05-25 16:43:16,118 | INFO     | zombie collector waiting for pid 182413
[2025-05-25 12:43:36] 2025-05-25 16:43:16,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 12:43:36] 2025-05-25 16:43:16,118 | INFO     | collected zombie processes
[2025-05-25 12:43:36] 2025-05-25 16:43:16,118 | INFO     | will attempt to kill all subprocesses of pid=182413
[2025-05-25 12:43:36] 2025-05-25 16:43:19,353 | INFO     | process IDs to be killed: [182413] (in reverse order)
[2025-05-25 12:43:36] 2025-05-25 16:43:19,786 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 12:43:36] 2025-05-25 16:43:19,787 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 12:43:36] 2025-05-25 16:43:19,902 | INFO     | did not find any defunct processes belonging to 182413
[2025-05-25 12:43:36] 2025-05-25 16:43:19,997 | INFO     | did not find any defunct processes belonging to 182413
[2025-05-25 12:43:36] 2025-05-25 16:43:19,998 | INFO     | ready for new job
[2025-05-25 12:43:36] 2025-05-25 16:43:19,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 12:43:36] 2025-05-25 16:43:20,038 | INFO     | **************************************
[2025-05-25 12:43:36] 2025-05-25 16:43:20,038 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 12:43:36] 2025-05-25 16:43:20,038 | INFO     | **************************************
[2025-05-25 12:43:36] 2025-05-25 16:43:20,038 | INFO     | 
[2025-05-25 12:43:36] 2025-05-25 16:43:20,080 | INFO     | architecture information:
[2025-05-25 12:43:36] 2025-05-25 16:43:20,135 | INFO     | executing command: cat /etc/os-release
[2025-05-25 12:43:36] 2025-05-25 16:43:20,276 | INFO     | cat /etc/os-release:
[2025-05-25 12:43:36] NAME="CentOS Linux"
[2025-05-25 12:43:36] VERSION="7 (Core)"
[2025-05-25 12:43:36] ID="centos"
[2025-05-25 12:43:36] ID_LIKE="rhel fedora"
[2025-05-25 12:43:36] VERSION_ID="7"
[2025-05-25 12:43:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 12:43:36] ANSI_COLOR="0;31"
[2025-05-25 12:43:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 12:43:36] HOME_URL="https://www.centos.org/"
[2025-05-25 12:43:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 12:43:36] 
[2025-05-25 12:43:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 12:43:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 12:43:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 12:43:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 12:43:36] 
[2025-05-25 12:43:36] 2025-05-25 16:43:20,277 | INFO     | **************************************
[2025-05-25 12:43:36] 2025-05-25 16:43:20,782 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | INFO     | sufficient remaining disk space (73739010048 B)
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | INFO     | update_server=False
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 12:43:36] 2025-05-25 16:43:20,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 12:43:36] 2025-05-25 16:43:20,889 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 12:43:36] 2025-05-25 16:43:20,890 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 12:43:36] 2025-05-25 16:43:20,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 12:43:36] 2025-05-25 16:43:20,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 12:43:36] 2025-05-25 16:43:20,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 12:43:36] 2025-05-25 16:43:20,890 | INFO     | aborting loop
[2025-05-25 12:43:36] 2025-05-25 16:43:20,937 | INFO     | all job control threads have been joined
[2025-05-25 12:43:36] 2025-05-25 16:43:21,011 | INFO     | all data control threads have been joined
[2025-05-25 12:43:36] 2025-05-25 16:43:21,475 | INFO     | all payload control threads have been joined
[2025-05-25 12:43:36] 2025-05-25 16:43:21,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 12:43:36] 2025-05-25 16:43:21,895 | INFO     | [job] retrieve thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:21,895 | INFO     | [job] job monitor thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:21,943 | INFO     | [job] control thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,017 | INFO     | [data] control thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,032 | INFO     | [payload] validate_post thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,049 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,187 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,188 | INFO     | [job] validate thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,490 | INFO     | [payload] control thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,688 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,900 | INFO     | [data] copytool_out thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:22,975 | INFO     | [payload] failed_post thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:23,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:23,196 | INFO     | [data] copytool_in thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:23,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 12:43:36] 2025-05-25 16:43:24,816 | INFO     | [job] queue monitor thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:25,738 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 12:43:36] 2025-05-25 16:43:27,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151865579328)>', '<ExcThread(monitor, started 140151527290624)>']
[2025-05-25 12:43:36] 2025-05-25 16:43:27,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 12:43:36] 2025-05-25 16:43:27,954 | INFO     | [monitor] control thread has ended
[2025-05-25 12:43:36] 2025-05-25 16:43:32,787 | INFO     | all workflow threads have been joined
[2025-05-25 12:43:36] 2025-05-25 16:43:32,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 12:43:36] 2025-05-25 16:43:32,788 | INFO     | traces error code: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:32,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 12:43:36] 2025-05-25 16:43:35,652 [wrapper] ==== pilot stdout END ====
[2025-05-25 12:43:36] 2025-05-25 16:43:35,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 12:43:36] 2025-05-25 16:43:35,657 [wrapper] pilotpid: 133978
[2025-05-25 12:43:36] 2025-05-25 16:43:35,660 [wrapper] Pilot exit status: 0
[2025-05-25 12:43:36] 2025-05-25 16:43:35,712 [wrapper] pandaids: 6665685602 6665685602
[2025-05-25 12:43:36] 2025-05-25 16:43:35,839 [wrapper] cleanup supervisor_pilot 3471986 133979
[2025-05-25 12:43:36] 2025-05-25 16:43:35,850 [wrapper] Test setup, not cleaning
[2025-05-25 12:43:36] 2025-05-25 16:43:35,870 [wrapper] apfmon messages muted
[2025-05-25 12:43:36] 2025-05-25 16:43:35,882 [wrapper] ==== wrapper stdout END ====
[2025-05-25 12:43:36] 2025-05-25 16:43:35,895 [wrapper] ==== wrapper stderr END ====
[2025-05-25 12:43:36]  *** Error codes and diagnostics ***
[2025-05-25 12:43:36]     "exeErrorCode": 0,
[2025-05-25 12:43:36]     "exeErrorDiag": "",
[2025-05-25 12:43:36]     "pilotErrorCode": 0,
[2025-05-25 12:43:36]     "pilotErrorDiag": "",
[2025-05-25 12:43:36]  *** Listing of results directory ***
[2025-05-25 12:43:36] total 645596
[2025-05-25 12:43:36] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas    495897 May 24 21:25 pilot3.tar.gz
[2025-05-25 12:43:36] -rwx------. 1 boincer umatlas     37140 May 24 21:28 runpilot2-wrapper.sh
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas      5111 May 24 21:28 queuedata.json
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas       100 May 25 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 12:43:36] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 08:26 run_atlas
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas       105 May 25 08:26 job.xml
[2025-05-25 12:43:36] -rw-r--r--. 3 boincer umatlas 226828191 May 25 08:26 EVNT.44871834._001076.pool.root.1
[2025-05-25 12:43:36] -rw-r--r--. 3 boincer umatlas 226828191 May 25 08:26 ATLAS.root_0
[2025-05-25 12:43:36] -rw-r--r--. 2 boincer umatlas     15093 May 25 08:26 start_atlas.sh
[2025-05-25 12:43:36] drwxrwx--x. 2 boincer umatlas      4096 May 25 08:26 shared
[2025-05-25 12:43:36] -rw-r--r--. 2 boincer umatlas    508869 May 25 08:26 input.tar.gz
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas         0 May 25 08:26 boinc_lockfile
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas      2558 May 25 08:48 pandaJob.out
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas    990811 May 25 08:48 agis_schedconf.cvmfs.json
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas      6932 May 25 12:38 init_data.xml
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas 200842452 May 25 12:39 HITS.44871837._026998.pool.root.1
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas       530 May 25 12:39 boinc_task_state.xml
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas        96 May 25 12:42 pilot_heartbeat.json
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas      1046 May 25 12:42 memory_monitor_summary.json
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas   1596740 May 25 12:42 agis_ddmendpoints.agis.ALL.json
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas    387768 May 25 12:42 log.44871837._026998.job.log.tgz.1
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas      7716 May 25 12:43 heartbeat.json
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas      4476 May 25 12:43 pilotlog.txt
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas        28 May 25 12:43 wrapper_checkpoint.txt
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas      8192 May 25 12:43 boinc_mmap_file
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas    994463 May 25 12:43 log.44871837._026998.job.log.1
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas       357 May 25 12:43 output.list
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas       620 May 25 12:43 runtime_log
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas   1402880 May 25 12:43 result.tar.gz
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas       783 May 25 12:43 rz1KDmxKFd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmndNKDmcogeEm.diag
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas      8740 May 25 12:43 runtime_log.err
[2025-05-25 12:43:36] -rw-r--r--. 1 boincer umatlas     23233 May 25 12:43 stderr.txt
[2025-05-25 12:43:36] HITS file was successfully produced:
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas 200842452 May 25 12:39 shared/HITS.pool.root.1
[2025-05-25 12:43:36]  *** Contents of shared directory: ***
[2025-05-25 12:43:36] total 419540
[2025-05-25 12:43:36] -rw-r--r--. 3 boincer umatlas 226828191 May 25 08:26 ATLAS.root_0
[2025-05-25 12:43:36] -rw-r--r--. 2 boincer umatlas     15093 May 25 08:26 start_atlas.sh
[2025-05-25 12:43:36] -rw-r--r--. 2 boincer umatlas    508869 May 25 08:26 input.tar.gz
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas 200842452 May 25 12:39 HITS.pool.root.1
[2025-05-25 12:43:36] -rw-------. 1 boincer umatlas   1402880 May 25 12:43 result.tar.gz
12:43:38 (111678): run_atlas exited; CPU time 40612.315134
12:43:38 (111678): called boinc_finish(0)

</stderr_txt>
]]>

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