Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:30:48 (4086908): wrapper (7.7.26015): starting
08:30:48 (4086908): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 08:30:48] Arguments: --nthreads 8
[2025-05-25 08:30:48] Threads: 8
[2025-05-25 08:30:48] Checking for CVMFS
[2025-05-25 08:30:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 08:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 08:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 08:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 08:30:49] 2.12.6.0 4868 22916 364132 146402 2 491 24708729 32935936 35354 16776704 0 193118960 99.667 170312836 22040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 08:30:49] CVMFS is ok
[2025-05-25 08:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 08:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 08:30:49] Further information can be found at the LHC@home message board.
[2025-05-25 08:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 08:30:49] Checking for apptainer binary...
[2025-05-25 08:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 08:30:49] Running /usr/bin/apptainer --version
[2025-05-25 08:30:49] apptainer version 1.4.1-1.el9
[2025-05-25 08:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 08:30:49] c7-3-34.aglt2.org
[2025-05-25 08:30:49] apptainer works
[2025-05-25 08:30:49] Set ATHENA_PROC_NUMBER=8
[2025-05-25 08:30:49] Set ATHENA_CORE_NUMBER=8
[2025-05-25 08:30:49] Starting ATLAS job with PandaID=6665685523
[2025-05-25 08:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:40:05 (4086908): BOINC client no longer exists - exiting
08:40:05 (4086908): timer handler: client dead, exiting
08:48:07 (111679): wrapper (7.7.26015): starting
08:48:07 (111679): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 08:48:07] Arguments: --nthreads 8
[2025-05-25 08:48:07] Threads: 8
[2025-05-25 08:48:07] This job has been restarted, cleaning up previous attempt
[2025-05-25 08:48:07] Checking for CVMFS
[2025-05-25 08:48:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 08:48:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 08:48:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 08:48:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 08:48:08] 2.12.6.0 4868 22933 374800 146402 0 722 25163456 32935937 29140 16776704 0 193431482 99.667 170440766 22031 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 08:48:08] CVMFS is ok
[2025-05-25 08:48:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 08:48:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 08:48:08] Further information can be found at the LHC@home message board.
[2025-05-25 08:48:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 08:48:08] Checking for apptainer binary...
[2025-05-25 08:48:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 08:48:08] Running /usr/bin/apptainer --version
[2025-05-25 08:48:08] apptainer version 1.4.1-1.el9
[2025-05-25 08:48:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 08:48:08] c7-3-34.aglt2.org
[2025-05-25 08:48:08] apptainer works
[2025-05-25 08:48:08] Set ATHENA_PROC_NUMBER=8
[2025-05-25 08:48:08] Set ATHENA_CORE_NUMBER=8
[2025-05-25 08:48:08] Starting ATLAS job with PandaID=6665685523
[2025-05-25 08:48:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 11:11:20]  *** The last 200 lines of the pilot log: ***
[2025-05-25 11:11:20] 2025-05-25 15:11:00,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 11:11:20] 2025-05-25 15:11:00,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 11:11:20] 2025-05-25 15:11:00,479 | INFO     | fitting pss+swap vs Time
[2025-05-25 11:11:20] 2025-05-25 15:11:00,486 | INFO     | sum of square deviations: 832722590.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,486 | INFO     | sum of deviations: 18198501490.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | mean x: 1748181583.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | mean y: 2090443.7410071942
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | -- intersect: -38203051971.11297
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | intersect: -38203051971.11297
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | chi2: 2.783764173668684
[2025-05-25 11:11:20] 2025-05-25 15:11:00,487 | INFO     | sum of square deviations: 746051197.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | sum of deviations: 25937963262.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | mean x: 1748181430.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | mean y: 2103636.529850746
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | -- intersect: -60776923154.716194
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | intersect: -60776923154.716194
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | chi2: 1.936425948104701
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | current chi2=1.936425948104701 (change=30.438577864420452 %)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,488 | INFO     | sum of square deviations: 665612480.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | sum of deviations: 24638965243.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | mean x: 1748181278.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | mean y: 2101169.689922481
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | -- intersect: -64710293866.99166
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | intersect: -64710293866.99166
[2025-05-25 11:11:20] 2025-05-25 15:11:00,489 | INFO     | chi2: 1.9378084709824668
[2025-05-25 11:11:20] 2025-05-25 15:11:00,493 | INFO     | current chi2=1.9378084709824668 (change=-0.07139559760180378 %)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,493 | INFO     | right removable region: 128
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | sum of square deviations: 746051197.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | sum of deviations: -5189126894.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | mean x: 1748181735.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | mean y: 2131194.9552238807
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | -- intersect: 12161533779.765959
[2025-05-25 11:11:20] 2025-05-25 15:11:00,494 | INFO     | intersect: 12161533779.765959
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | chi2: 0.977348626094726
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | current chi2=0.977348626094726 (change=64.89111271208394 %)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | sum of square deviations: 665612480.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | sum of deviations: -8578991200.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | mean x: 1748181888.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | mean y: 2137502.379844961
[2025-05-25 11:11:20] 2025-05-25 15:11:00,495 | INFO     | -- intersect: 22534222587.610497
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | intersect: 22534222587.610497
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | chi2: 0.9114813343553232
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | current chi2=0.9114813343553232 (change=6.739385515135396 %)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | left removable region: 20
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | sum of square deviations: 390582207.0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | sum of deviations: -141377290.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | mean x: 1748181857.5
[2025-05-25 11:11:20] 2025-05-25 15:11:00,496 | INFO     | mean y: 2152618.027777778
[2025-05-25 11:11:20] 2025-05-25 15:11:00,497 | INFO     | -- intersect: 634934167.9425877
[2025-05-25 11:11:20] 2025-05-25 15:11:00,497 | INFO     | intersect: 634934167.9425877
[2025-05-25 11:11:20] 2025-05-25 15:11:00,497 | INFO     | chi2: 0.024216501812640446
[2025-05-25 11:11:20] 2025-05-25 15:11:00,497 | INFO     | -- intersect: 634934167.9425877
[2025-05-25 11:11:20] 2025-05-25 15:11:00,497 | INFO     | current memory leak: -0.36 B/s (using 108 data points, chi2=0.02)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | ..............................
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . Timing measurements:
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . get job = 0 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . initial setup = 1 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . payload setup = 16 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . stage-in = 0 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . payload execution = 8483 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . stage-out = 2 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | . log creation = 0 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,502 | INFO     | ..............................
[2025-05-25 11:11:20] 2025-05-25 15:11:00,896 | INFO     | 
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | job summary report
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | --------------------------------------------------
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | PanDA job id: 6665685523
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | task id: 44871837
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | errors: (none)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | pilot state: finished 
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | transexitcode: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | exeerrorcode: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | exeerrordiag: 
[2025-05-25 11:11:20] 2025-05-25 15:11:00,897 | INFO     | exitcode: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | exitmsg: OK
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | cpuconsumptiontime: 38857 s
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | nevents: 400
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | neventsw: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | pid: 182473
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | pgrp: 182473
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | corecount: 8
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | event service: False
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | sizes: {0: 2393570, 1: 2393769, 12: 2394003, 23: 2394003, 8504: 2421800, 8507: 2430925, 8515: 2431039}
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | --------------------------------------------------
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | 
[2025-05-25 11:11:20] 2025-05-25 15:11:00,898 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | job 6665685523 has completed (purged errors)
[2025-05-25 11:11:20] 2025-05-25 15:11:00,982 | INFO     | overall cleanup function is called
[2025-05-25 11:11:20] 2025-05-25 15:11:01,918 | INFO     | number of running child processes to parent process 182473: 1
[2025-05-25 11:11:20] 2025-05-25 15:11:01,918 | INFO     | maximum number of monitored processes: 6
[2025-05-25 11:11:20] 2025-05-25 15:11:01,918 | INFO     | aborting job monitoring since job object (job id=6665685523) has expired
[2025-05-25 11:11:20] 2025-05-25 15:11:02,045 | INFO     | --- collectZombieJob: --- 10, [182473]
[2025-05-25 11:11:20] 2025-05-25 15:11:02,046 | INFO     | zombie collector waiting for pid 182473
[2025-05-25 11:11:20] 2025-05-25 15:11:02,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 11:11:20] 2025-05-25 15:11:02,046 | INFO     | collected zombie processes
[2025-05-25 11:11:20] 2025-05-25 15:11:02,046 | INFO     | will attempt to kill all subprocesses of pid=182473
[2025-05-25 11:11:20] 2025-05-25 15:11:04,850 | INFO     | 8553s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-05-25 11:11:20] 2025-05-25 15:11:05,145 | INFO     | process IDs to be killed: [182473] (in reverse order)
[2025-05-25 11:11:20] 2025-05-25 15:11:05,376 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 11:11:20] 2025-05-25 15:11:05,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 11:11:20] 2025-05-25 15:11:05,480 | INFO     | did not find any defunct processes belonging to 182473
[2025-05-25 11:11:20] 2025-05-25 15:11:05,643 | INFO     | did not find any defunct processes belonging to 182473
[2025-05-25 11:11:20] 2025-05-25 15:11:05,644 | INFO     | ready for new job
[2025-05-25 11:11:20] 2025-05-25 15:11:05,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 11:11:20] 2025-05-25 15:11:05,645 | INFO     | **************************************
[2025-05-25 11:11:20] 2025-05-25 15:11:05,645 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 11:11:20] 2025-05-25 15:11:05,668 | INFO     | **************************************
[2025-05-25 11:11:20] 2025-05-25 15:11:05,668 | INFO     | 
[2025-05-25 11:11:20] 2025-05-25 15:11:05,701 | INFO     | architecture information:
[2025-05-25 11:11:20] 2025-05-25 15:11:05,706 | INFO     | executing command: cat /etc/os-release
[2025-05-25 11:11:20] 2025-05-25 15:11:05,744 | INFO     | cat /etc/os-release:
[2025-05-25 11:11:20] NAME="CentOS Linux"
[2025-05-25 11:11:20] VERSION="7 (Core)"
[2025-05-25 11:11:20] ID="centos"
[2025-05-25 11:11:20] ID_LIKE="rhel fedora"
[2025-05-25 11:11:20] VERSION_ID="7"
[2025-05-25 11:11:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 11:11:20] ANSI_COLOR="0;31"
[2025-05-25 11:11:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 11:11:20] HOME_URL="https://www.centos.org/"
[2025-05-25 11:11:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 11:11:20] 
[2025-05-25 11:11:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 11:11:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 11:11:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 11:11:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 11:11:20] 
[2025-05-25 11:11:20] 2025-05-25 15:11:05,744 | INFO     | **************************************
[2025-05-25 11:11:20] 2025-05-25 15:11:06,248 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-25 11:11:20] 2025-05-25 15:11:06,369 | INFO     | sufficient remaining disk space (73942433792 B)
[2025-05-25 11:11:20] 2025-05-25 15:11:06,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 11:11:20] 2025-05-25 15:11:06,369 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 11:11:20] 2025-05-25 15:11:06,369 | INFO     | update_server=False
[2025-05-25 11:11:20] 2025-05-25 15:11:06,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 11:11:20] 2025-05-25 15:11:06,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 11:11:20] 2025-05-25 15:11:06,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 11:11:20] 2025-05-25 15:11:06,378 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 11:11:20] 2025-05-25 15:11:06,379 | INFO     | aborting loop
[2025-05-25 11:11:20] 2025-05-25 15:11:06,394 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 11:11:20] 2025-05-25 15:11:06,395 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 11:11:20] 2025-05-25 15:11:06,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 11:11:20] 2025-05-25 15:11:06,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 11:11:20] 2025-05-25 15:11:06,640 | INFO     | all payload control threads have been joined
[2025-05-25 11:11:20] 2025-05-25 15:11:07,381 | INFO     | [job] queue monitor thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,428 | INFO     | [job] retrieve thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,433 | INFO     | [job] job monitor thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,435 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,444 | INFO     | all data control threads have been joined
[2025-05-25 11:11:20] 2025-05-25 15:11:07,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,648 | INFO     | [payload] control thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,731 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:07,969 | INFO     | all job control threads have been joined
[2025-05-25 11:11:20] 2025-05-25 15:11:08,153 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,230 | INFO     | [payload] validate_post thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,231 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 11:11:20] 2025-05-25 15:11:08,337 | INFO     | [data] copytool_in thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,391 | INFO     | [data] copytool_out thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,451 | INFO     | [data] control thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,480 | INFO     | [payload] failed_post thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,719 | INFO     | [job] validate thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:08,988 | INFO     | [job] control thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:12,242 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 11:11:20] 2025-05-25 15:11:14,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685921675072)>', '<ExcThread(monitor, started 140685067937536)>']
[2025-05-25 11:11:20] 2025-05-25 15:11:14,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 11:11:20] 2025-05-25 15:11:14,499 | INFO     | [monitor] control thread has ended
[2025-05-25 11:11:20] 2025-05-25 15:11:19,147 | INFO     | all workflow threads have been joined
[2025-05-25 11:11:20] 2025-05-25 15:11:19,148 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 11:11:20] 2025-05-25 15:11:19,148 | INFO     | traces error code: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:19,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 11:11:20] 2025-05-25 15:11:19,813 [wrapper] ==== pilot stdout END ====
[2025-05-25 11:11:20] 2025-05-25 15:11:19,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 11:11:20] 2025-05-25 15:11:19,826 [wrapper] pilotpid: 134406
[2025-05-25 11:11:20] 2025-05-25 15:11:19,830 [wrapper] Pilot exit status: 0
[2025-05-25 11:11:20] 2025-05-25 15:11:19,853 [wrapper] pandaids: 6665685523 6665685523
[2025-05-25 11:11:20] 2025-05-25 15:11:20,017 [wrapper] cleanup supervisor_pilot 2251974 134407
[2025-05-25 11:11:20] 2025-05-25 15:11:20,022 [wrapper] Test setup, not cleaning
[2025-05-25 11:11:20] 2025-05-25 15:11:20,027 [wrapper] apfmon messages muted
[2025-05-25 11:11:20] 2025-05-25 15:11:20,030 [wrapper] ==== wrapper stdout END ====
[2025-05-25 11:11:20] 2025-05-25 15:11:20,033 [wrapper] ==== wrapper stderr END ====
[2025-05-25 11:11:20]  *** Error codes and diagnostics ***
[2025-05-25 11:11:20]     "exeErrorCode": 0,
[2025-05-25 11:11:20]     "exeErrorDiag": "",
[2025-05-25 11:11:20]     "pilotErrorCode": 0,
[2025-05-25 11:11:20]     "pilotErrorDiag": "",
[2025-05-25 11:11:20]  *** Listing of results directory ***
[2025-05-25 11:11:20] total 633100
[2025-05-25 11:11:20] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas    495897 May 24 20:39 pilot3.tar.gz
[2025-05-25 11:11:20] -rwx------. 1 boincer umatlas     37140 May 24 21:22 runpilot2-wrapper.sh
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas      5111 May 24 21:22 queuedata.json
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas       100 May 25 08:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 11:11:20] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 08:30 run_atlas
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas       105 May 25 08:30 job.xml
[2025-05-25 11:11:20] -rw-r--r--. 3 boincer umatlas 222709462 May 25 08:30 EVNT.44871834._001073.pool.root.1
[2025-05-25 11:11:20] -rw-r--r--. 3 boincer umatlas 222709462 May 25 08:30 ATLAS.root_0
[2025-05-25 11:11:20] -rw-r--r--. 2 boincer umatlas     15093 May 25 08:30 start_atlas.sh
[2025-05-25 11:11:20] drwxrwx--x. 2 boincer umatlas      4096 May 25 08:30 shared
[2025-05-25 11:11:20] -rw-r--r--. 2 boincer umatlas    508878 May 25 08:30 input.tar.gz
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas         0 May 25 08:30 boinc_lockfile
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas   1596740 May 25 08:31 agis_ddmendpoints.agis.ALL.json
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas      2559 May 25 08:48 pandaJob.out
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas    990811 May 25 08:48 agis_schedconf.cvmfs.json
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas 196989101 May 25 11:09 HITS.44871837._026919.pool.root.1
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas       529 May 25 11:09 boinc_task_state.xml
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas      1058 May 25 11:10 memory_monitor_summary.json
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas    342341 May 25 11:10 log.44871837._026919.job.log.tgz.1
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas        96 May 25 11:10 pilot_heartbeat.json
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas      7710 May 25 11:11 heartbeat.json
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas      6931 May 25 11:11 init_data.xml
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas        27 May 25 11:11 wrapper_checkpoint.txt
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas      4476 May 25 11:11 pilotlog.txt
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas    679429 May 25 11:11 log.44871837._026919.job.log.1
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas       357 May 25 11:11 output.list
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas      8192 May 25 11:11 boinc_mmap_file
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas       620 May 25 11:11 runtime_log
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas   1044480 May 25 11:11 result.tar.gz
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas       779 May 25 11:11 TrfMDmtFFd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLdNKDmejcsEo.diag
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas      8739 May 25 11:11 runtime_log.err
[2025-05-25 11:11:20] -rw-r--r--. 1 boincer umatlas     23119 May 25 11:11 stderr.txt
[2025-05-25 11:11:20] HITS file was successfully produced:
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas 196989101 May 25 11:09 shared/HITS.pool.root.1
[2025-05-25 11:11:20]  *** Contents of shared directory: ***
[2025-05-25 11:11:20] total 411412
[2025-05-25 11:11:20] -rw-r--r--. 3 boincer umatlas 222709462 May 25 08:30 ATLAS.root_0
[2025-05-25 11:11:20] -rw-r--r--. 2 boincer umatlas     15093 May 25 08:30 start_atlas.sh
[2025-05-25 11:11:20] -rw-r--r--. 2 boincer umatlas    508878 May 25 08:30 input.tar.gz
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas 196989101 May 25 11:09 HITS.pool.root.1
[2025-05-25 11:11:20] -rw-------. 1 boincer umatlas   1044480 May 25 11:11 result.tar.gz
11:11:22 (111679): run_atlas exited; CPU time 39166.078731
11:11:22 (111679): called boinc_finish(0)

</stderr_txt>
]]>

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