Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:10:58 (37443): wrapper (7.7.26015): starting
04:10:58 (37443): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 04:10:58] Arguments: --nthreads 8
[2025-05-25 04:10:58] Threads: 8
[2025-05-25 04:10:58] Checking for CVMFS
[2025-05-25 04:10:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 04:10:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 04:10:59] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 04:11:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 04:11:00] 2.11.2.0 5200 14125 152528 146394 3 519 16901174 18432000 22590 130560 0 82122079 99.260 121686700 50027 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 04:11:00] CVMFS is ok
[2025-05-25 04:11:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 04:11:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 04:11:00] Further information can be found at the LHC@home message board.
[2025-05-25 04:11:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 04:11:00] Checking for apptainer binary...
[2025-05-25 04:11:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 04:11:00] Running /usr/bin/apptainer --version
[2025-05-25 04:11:00] apptainer version 1.3.2-1.el7
[2025-05-25 04:11:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 04:11:14] c-212-7.aglt2.org
[2025-05-25 04:11:14] apptainer works
[2025-05-25 04:11:14] Set ATHENA_PROC_NUMBER=8
[2025-05-25 04:11:14] Set ATHENA_CORE_NUMBER=8
[2025-05-25 04:11:14] Starting ATLAS job with PandaID=6665686175
[2025-05-25 04:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:27 (74841): wrapper (7.7.26015): starting
05:00:27 (74841): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 05:00:27] Arguments: --nthreads 8
[2025-05-25 05:00:27] Threads: 8
[2025-05-25 05:00:27] This job has been restarted, cleaning up previous attempt
[2025-05-25 05:00:27] Checking for CVMFS
[2025-05-25 05:00:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 05:00:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 05:00:27] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 05:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 05:00:28] 2.11.2.0 5200 14175 154048 146395 2 656 16990607 18432001 19022 130560 0 82336359 99.261 121696534 49935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 05:00:28] CVMFS is ok
[2025-05-25 05:00:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 05:00:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 05:00:28] Further information can be found at the LHC@home message board.
[2025-05-25 05:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 05:00:28] Checking for apptainer binary...
[2025-05-25 05:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 05:00:28] Running /usr/bin/apptainer --version
[2025-05-25 05:00:28] apptainer version 1.3.2-1.el7
[2025-05-25 05:00:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 05:00:30] c-212-7.aglt2.org
[2025-05-25 05:00:30] apptainer works
[2025-05-25 05:00:30] Set ATHENA_PROC_NUMBER=8
[2025-05-25 05:00:30] Set ATHENA_CORE_NUMBER=8
[2025-05-25 05:00:30] Starting ATLAS job with PandaID=6665686175
[2025-05-25 05:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 10:00:51]  *** The last 200 lines of the pilot log: ***
[2025-05-25 10:00:51] 2025-05-25 14:00:33,746 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 10:00:51] 2025-05-25 14:00:33,746 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 10:00:51] 2025-05-25 14:00:33,753 | INFO     | fitting pss+swap vs Time
[2025-05-25 10:00:51] 2025-05-25 14:00:33,754 | INFO     | sum of square deviations: 7799571178.034141
[2025-05-25 10:00:51] 2025-05-25 14:00:33,759 | INFO     | sum of deviations: 41897824519.27985
[2025-05-25 10:00:51] 2025-05-25 14:00:33,759 | INFO     | mean x: 1748172602.0819113
[2025-05-25 10:00:51] 2025-05-25 14:00:33,760 | INFO     | mean y: 2463016.071672355
[2025-05-25 10:00:51] 2025-05-25 14:00:33,760 | INFO     | -- intersect: -9388390306.444176
[2025-05-25 10:00:51] 2025-05-25 14:00:33,760 | INFO     | intersect: -9388390306.444176
[2025-05-25 10:00:51] 2025-05-25 14:00:33,760 | INFO     | chi2: 2.4675505754696285
[2025-05-25 10:00:51] 2025-05-25 14:00:33,764 | INFO     | sum of square deviations: 7407050208.000012
[2025-05-25 10:00:51] 2025-05-25 14:00:33,766 | INFO     | sum of deviations: 61534771318.16663
[2025-05-25 10:00:51] 2025-05-25 14:00:33,766 | INFO     | mean x: 1748172449.5833333
[2025-05-25 10:00:51] 2025-05-25 14:00:33,766 | INFO     | mean y: 2470535.2430555555
[2025-05-25 10:00:51] 2025-05-25 14:00:33,766 | INFO     | -- intersect: -14520637704.747616
[2025-05-25 10:00:51] 2025-05-25 14:00:33,766 | INFO     | intersect: -14520637704.747616
[2025-05-25 10:00:51] 2025-05-25 14:00:33,767 | INFO     | chi2: 1.5988075430328597
[2025-05-25 10:00:51] 2025-05-25 14:00:33,767 | INFO     | current chi2=1.5988075430328597 (change=35.20669610880937 %)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,767 | INFO     | sum of square deviations: 7027907513.13074
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | sum of deviations: 60370842404.26856
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | mean x: 1748172297.0812721
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | mean y: 2470067.03180212
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | -- intersect: -15014607782.301916
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | intersect: -15014607782.301916
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | chi2: 1.5989901051564683
[2025-05-25 10:00:51] 2025-05-25 14:00:33,773 | INFO     | current chi2=1.5989901051564683 (change=-0.011418642875700014 %)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,774 | INFO     | right removable region: 282
[2025-05-25 10:00:51] 2025-05-25 14:00:33,774 | INFO     | sum of square deviations: 7407035568.000011
[2025-05-25 10:00:51] 2025-05-25 14:00:33,776 | INFO     | sum of deviations: -8446851529.08333
[2025-05-25 10:00:51] 2025-05-25 14:00:33,776 | INFO     | mean x: 1748172754.5833333
[2025-05-25 10:00:51] 2025-05-25 14:00:33,776 | INFO     | mean y: 2482448.815972222
[2025-05-25 10:00:51] 2025-05-25 14:00:33,776 | INFO     | -- intersect: 1996067543.6343024
[2025-05-25 10:00:51] 2025-05-25 14:00:33,776 | INFO     | intersect: 1996067543.6343024
[2025-05-25 10:00:51] 2025-05-25 14:00:33,780 | INFO     | chi2: 0.8889475336387733
[2025-05-25 10:00:51] 2025-05-25 14:00:33,780 | INFO     | current chi2=0.8889475336387733 (change=63.974495903915276 %)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,781 | INFO     | sum of square deviations: 7027895557.96468
[2025-05-25 10:00:51] 2025-05-25 14:00:33,782 | INFO     | sum of deviations: -9871138994.957602
[2025-05-25 10:00:51] 2025-05-25 14:00:33,782 | INFO     | mean x: 1748172907.0848057
[2025-05-25 10:00:51] 2025-05-25 14:00:33,782 | INFO     | mean y: 2483016.4982332154
[2025-05-25 10:00:51] 2025-05-25 14:00:33,782 | INFO     | -- intersect: 2457906209.789226
[2025-05-25 10:00:51] 2025-05-25 14:00:33,782 | INFO     | intersect: 2457906209.789226
[2025-05-25 10:00:51] 2025-05-25 14:00:33,783 | INFO     | chi2: 0.8876281965630248
[2025-05-25 10:00:51] 2025-05-25 14:00:33,783 | INFO     | current chi2=0.8876281965630248 (change=0.14841562924956733 %)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,783 | INFO     | left removable region: 20
[2025-05-25 10:00:51] 2025-05-25 14:00:33,783 | INFO     | sum of square deviations: 5576555039.480951
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | sum of deviations: 7946835818.625954
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | mean x: 1748172876.5877862
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | mean y: 2491834.820610687
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | -- intersect: -2488731283.119108
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | intersect: -2488731283.119108
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | chi2: 0.0010216467736625676
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | -- intersect: -2488731283.119108
[2025-05-25 10:00:51] 2025-05-25 14:00:33,789 | INFO     | current memory leak: 1.43 B/s (using 262 data points, chi2=0.00)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | ..............................
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . Timing measurements:
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . get job = 0 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . initial setup = 1 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . payload setup = 13 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . stage-in = 0 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,790 | INFO     | . payload execution = 17888 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,791 | INFO     | . stage-out = 5 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,791 | INFO     | . log creation = 1 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,791 | INFO     | ..............................
[2025-05-25 10:00:51] 2025-05-25 14:00:33,992 | INFO     | 
[2025-05-25 10:00:51] 2025-05-25 14:00:33,992 | INFO     | job summary report
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | --------------------------------------------------
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | PanDA job id: 6665686175
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | task id: 44871837
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | errors: (none)
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | pilot state: finished 
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | transexitcode: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | exeerrorcode: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | exeerrordiag: 
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | exitcode: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | exitmsg: OK
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | cpuconsumptiontime: 44829 s
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | nevents: 400
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | neventsw: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | pid: 44537
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | pgrp: 44537
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | corecount: 8
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | event service: False
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | sizes: {0: 2392860, 1: 2393716, 9: 2393922, 12: 2393950, 17906: 2426081, 17913: 2435022, 17914: 2435206, 17969: 2435376}
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | --------------------------------------------------
[2025-05-25 10:00:51] 2025-05-25 14:00:33,993 | INFO     | 
[2025-05-25 10:00:51] 2025-05-25 14:00:33,994 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-25 10:00:51] 2025-05-25 14:00:34,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | job 6665686175 has completed (purged errors)
[2025-05-25 10:00:51] 2025-05-25 14:00:34,015 | INFO     | overall cleanup function is called
[2025-05-25 10:00:51] 2025-05-25 14:00:35,025 | INFO     | --- collectZombieJob: --- 10, [44537]
[2025-05-25 10:00:51] 2025-05-25 14:00:35,025 | INFO     | zombie collector waiting for pid 44537
[2025-05-25 10:00:51] 2025-05-25 14:00:35,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 10:00:51] 2025-05-25 14:00:35,026 | INFO     | collected zombie processes
[2025-05-25 10:00:51] 2025-05-25 14:00:35,026 | INFO     | will attempt to kill all subprocesses of pid=44537
[2025-05-25 10:00:51] 2025-05-25 14:00:36,025 | INFO     | process IDs to be killed: [44537] (in reverse order)
[2025-05-25 10:00:51] 2025-05-25 14:00:37,256 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 10:00:51] 2025-05-25 14:00:37,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 10:00:51] 2025-05-25 14:00:37,355 | INFO     | did not find any defunct processes belonging to 44537
[2025-05-25 10:00:51] 2025-05-25 14:00:37,493 | INFO     | did not find any defunct processes belonging to 44537
[2025-05-25 10:00:51] 2025-05-25 14:00:37,494 | INFO     | ready for new job
[2025-05-25 10:00:51] 2025-05-25 14:00:37,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 10:00:51] 2025-05-25 14:00:37,495 | INFO     | **************************************
[2025-05-25 10:00:51] 2025-05-25 14:00:37,495 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 10:00:51] 2025-05-25 14:00:37,496 | INFO     | **************************************
[2025-05-25 10:00:51] 2025-05-25 14:00:37,496 | INFO     | 
[2025-05-25 10:00:51] 2025-05-25 14:00:37,500 | INFO     | architecture information:
[2025-05-25 10:00:51] 2025-05-25 14:00:37,523 | INFO     | executing command: cat /etc/os-release
[2025-05-25 10:00:51] 2025-05-25 14:00:37,655 | INFO     | cat /etc/os-release:
[2025-05-25 10:00:51] NAME="CentOS Linux"
[2025-05-25 10:00:51] VERSION="7 (Core)"
[2025-05-25 10:00:51] ID="centos"
[2025-05-25 10:00:51] ID_LIKE="rhel fedora"
[2025-05-25 10:00:51] VERSION_ID="7"
[2025-05-25 10:00:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 10:00:51] ANSI_COLOR="0;31"
[2025-05-25 10:00:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 10:00:51] HOME_URL="https://www.centos.org/"
[2025-05-25 10:00:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 10:00:51] 
[2025-05-25 10:00:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 10:00:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 10:00:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 10:00:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 10:00:51] 
[2025-05-25 10:00:51] 2025-05-25 14:00:37,655 | INFO     | **************************************
[2025-05-25 10:00:51] 2025-05-25 14:00:38,157 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-25 10:00:51] 2025-05-25 14:00:38,283 | INFO     | sufficient remaining disk space (103389593600 B)
[2025-05-25 10:00:51] 2025-05-25 14:00:38,283 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 10:00:51] 2025-05-25 14:00:38,283 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 10:00:51] 2025-05-25 14:00:38,283 | INFO     | update_server=False
[2025-05-25 10:00:51] 2025-05-25 14:00:38,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 10:00:51] 2025-05-25 14:00:38,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 10:00:51] 2025-05-25 14:00:38,688 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 10:00:51] 2025-05-25 14:00:38,689 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 10:00:51] 2025-05-25 14:00:38,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 10:00:51] 2025-05-25 14:00:38,689 | INFO     | will abort loop
[2025-05-25 10:00:51] 2025-05-25 14:00:38,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 10:00:51] 2025-05-25 14:00:38,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 10:00:51] 2025-05-25 14:00:39,060 | INFO     | all data control threads have been joined
[2025-05-25 10:00:51] 2025-05-25 14:00:39,113 | INFO     | all payload control threads have been joined
[2025-05-25 10:00:51] 2025-05-25 14:00:39,163 | INFO     | PID=96607 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-25 10:00:51] 2025-05-25 14:00:39,163 | INFO     | .. there are 22 such processes running
[2025-05-25 10:00:51] 2025-05-25 14:00:39,163 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 10:00:51] 2025-05-25 14:00:39,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 10:00:51] 2025-05-25 14:00:39,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 10:00:51] 2025-05-25 14:00:39,232 | INFO     | all job control threads have been joined
[2025-05-25 10:00:51] 2025-05-25 14:00:39,289 | INFO     | [job] retrieve thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:39,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:39,404 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:39,594 | INFO     | [payload] validate_post thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:39,694 | INFO     | [job] job monitor thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,001 | INFO     | [job] queue monitor thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,066 | INFO     | [data] control thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,070 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,119 | INFO     | [payload] control thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,239 | INFO     | [job] control thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,295 | INFO     | [data] copytool_out thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,337 | INFO     | [payload] failed_post thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,505 | INFO     | [data] copytool_in thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,687 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:40,738 | INFO     | [job] validate thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:42,853 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 10:00:51] 2025-05-25 14:00:44,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139653694367552)>', '<ExcThread(monitor, started 139653118150400)>']
[2025-05-25 10:00:51] 2025-05-25 14:00:44,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 10:00:51] 2025-05-25 14:00:44,218 | INFO     | [monitor] control thread has ended
[2025-05-25 10:00:51] 2025-05-25 14:00:48,597 [wrapper] supervise_pilot (15 min periods counter: 21)
[2025-05-25 10:00:51] 2025-05-25 14:00:49,231 | INFO     | all workflow threads have been joined
[2025-05-25 10:00:51] 2025-05-25 14:00:49,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 10:00:51] 2025-05-25 14:00:49,232 | INFO     | traces error code: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:49,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 10:00:51] 2025-05-25 14:00:49,750 [wrapper] ==== pilot stdout END ====
[2025-05-25 10:00:51] 2025-05-25 14:00:49,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 10:00:51] 2025-05-25 14:00:49,812 [wrapper] pilotpid: 96607
[2025-05-25 10:00:51] 2025-05-25 14:00:49,844 [wrapper] Pilot exit status: 0
[2025-05-25 10:00:51] 2025-05-25 14:00:50,097 [wrapper] pandaids: 6665686175 6665686175
[2025-05-25 10:00:51] 2025-05-25 14:00:50,460 [wrapper] cleanup supervisor_pilot 33794 96609
[2025-05-25 10:00:51] 2025-05-25 14:00:50,469 [wrapper] Test setup, not cleaning
[2025-05-25 10:00:51] 2025-05-25 14:00:50,472 [wrapper] apfmon messages muted
[2025-05-25 10:00:51] 2025-05-25 14:00:50,474 [wrapper] ==== wrapper stdout END ====
[2025-05-25 10:00:51] 2025-05-25 14:00:50,476 [wrapper] ==== wrapper stderr END ====
[2025-05-25 10:00:51]  *** Error codes and diagnostics ***
[2025-05-25 10:00:51]     "exeErrorCode": 0,
[2025-05-25 10:00:51]     "exeErrorDiag": "",
[2025-05-25 10:00:51]     "pilotErrorCode": 0,
[2025-05-25 10:00:51]     "pilotErrorDiag": "",
[2025-05-25 10:00:51]  *** Listing of results directory ***
[2025-05-25 10:00:51] total 636784
[2025-05-25 10:00:51] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas    495897 May 24 21:34 pilot3.tar.gz
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas      5111 May 24 21:42 queuedata.json
[2025-05-25 10:00:51] -rwx------ 1 boincer umatlas     37140 May 24 21:42 runpilot2-wrapper.sh
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas       100 May 25 04:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 10:00:51] -rwxr-xr-x 1 boincer umatlas      7986 May 25 04:10 run_atlas
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas       105 May 25 04:10 job.xml
[2025-05-25 10:00:51] -rw-r--r-- 3 boincer umatlas 223958558 May 25 04:10 EVNT.44871834._001086.pool.root.1
[2025-05-25 10:00:51] -rw-r--r-- 3 boincer umatlas 223958558 May 25 04:10 ATLAS.root_0
[2025-05-25 10:00:51] -rw-r--r-- 2 boincer umatlas     15093 May 25 04:10 start_atlas.sh
[2025-05-25 10:00:51] drwxrwx--x 2 boincer umatlas      4096 May 25 04:10 shared
[2025-05-25 10:00:51] -rw-r--r-- 2 boincer umatlas    508876 May 25 04:10 input.tar.gz
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas         0 May 25 04:10 boinc_lockfile
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas      2557 May 25 05:00 pandaJob.out
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas    990811 May 25 05:00 agis_schedconf.cvmfs.json
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas      6387 May 25 09:55 init_data.xml
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas 196441954 May 25 09:58 HITS.44871837._027228.pool.root.1
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas       531 May 25 09:58 boinc_task_state.xml
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas      1076 May 25 09:59 memory_monitor_summary.json
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas   1596740 May 25 09:59 agis_ddmendpoints.agis.ALL.json
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas    415708 May 25 09:59 log.44871837._027228.job.log.tgz.1
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas        95 May 25 10:00 pilot_heartbeat.json
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas      7744 May 25 10:00 heartbeat.json
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas      8192 May 25 10:00 boinc_mmap_file
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas        28 May 25 10:00 wrapper_checkpoint.txt
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas      4933 May 25 10:00 pilotlog.txt
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas   1520173 May 25 10:00 log.44871837._027228.job.log.1
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas       357 May 25 10:00 output.list
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas       620 May 25 10:00 runtime_log
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas   1955840 May 25 10:00 result.tar.gz
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas      8740 May 25 10:00 runtime_log.err
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas       787 May 25 10:00 r3LLDmwYFd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg7SKDmRlYGIo.diag
[2025-05-25 10:00:51] -rw-r--r-- 1 boincer umatlas     23122 May 25 10:00 stderr.txt
[2025-05-25 10:00:51] HITS file was successfully produced:
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas 196441954 May 25 09:58 shared/HITS.pool.root.1
[2025-05-25 10:00:51]  *** Contents of shared directory: ***
[2025-05-25 10:00:51] total 412984
[2025-05-25 10:00:51] -rw-r--r-- 3 boincer umatlas 223958558 May 25 04:10 ATLAS.root_0
[2025-05-25 10:00:51] -rw-r--r-- 2 boincer umatlas     15093 May 25 04:10 start_atlas.sh
[2025-05-25 10:00:51] -rw-r--r-- 2 boincer umatlas    508876 May 25 04:10 input.tar.gz
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas 196441954 May 25 09:58 HITS.pool.root.1
[2025-05-25 10:00:51] -rw------- 1 boincer umatlas   1955840 May 25 10:00 result.tar.gz
10:00:52 (74841): run_atlas exited; CPU time 44377.554594
10:00:52 (74841): called boinc_finish(0)

</stderr_txt>
]]>

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