Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:02:21 (36329): wrapper (7.7.26015): starting
04:02:21 (36329): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 04:02:21] Arguments: --nthreads 8
[2025-05-25 04:02:21] Threads: 8
[2025-05-25 04:02:21] Checking for CVMFS
[2025-05-25 04:02:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 04:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 04:02:22] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 04:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 04:02:22] 2.11.2.0 5200 14116 153224 146394 3 518 16709599 18432001 19825 130560 0 81882287 99.257 121685537 50053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 04:02:22] CVMFS is ok
[2025-05-25 04:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 04:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 04:02:22] Further information can be found at the LHC@home message board.
[2025-05-25 04:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 04:02:22] Checking for apptainer binary...
[2025-05-25 04:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 04:02:22] Running /usr/bin/apptainer --version
[2025-05-25 04:02:22] apptainer version 1.3.2-1.el7
[2025-05-25 04:02:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 04:02:25] c-212-7.aglt2.org
[2025-05-25 04:02:25] apptainer works
[2025-05-25 04:02:25] Set ATHENA_PROC_NUMBER=8
[2025-05-25 04:02:25] Set ATHENA_CORE_NUMBER=8
[2025-05-25 04:02:25] Starting ATLAS job with PandaID=6665678263
[2025-05-25 04:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:27 (74837): wrapper (7.7.26015): starting
05:00:27 (74837): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 05:00:27] Arguments: --nthreads 8
[2025-05-25 05:00:27] Threads: 8
[2025-05-25 05:00:27] This job has been restarted, cleaning up previous attempt
[2025-05-25 05:00:27] Checking for CVMFS
[2025-05-25 05:00:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 05:00:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 05:00:27] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 05:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 05:00:28] 2.11.2.0 5200 14175 154048 146395 2 656 16990607 18432001 19022 130560 0 82336359 99.261 121696534 49935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 05:00:28] CVMFS is ok
[2025-05-25 05:00:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 05:00:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 05:00:28] Further information can be found at the LHC@home message board.
[2025-05-25 05:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 05:00:28] Checking for apptainer binary...
[2025-05-25 05:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 05:00:28] Running /usr/bin/apptainer --version
[2025-05-25 05:00:28] apptainer version 1.3.2-1.el7
[2025-05-25 05:00:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 05:00:30] c-212-7.aglt2.org
[2025-05-25 05:00:30] apptainer works
[2025-05-25 05:00:30] Set ATHENA_PROC_NUMBER=8
[2025-05-25 05:00:30] Set ATHENA_CORE_NUMBER=8
[2025-05-25 05:00:30] Starting ATLAS job with PandaID=6665678263
[2025-05-25 05:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 10:03:47]  *** The last 200 lines of the pilot log: ***
[2025-05-25 10:03:47] 2025-05-25 14:03:31,098 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6665678263/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,099 | INFO     | extracted standard info from prmon json
[2025-05-25 10:03:47] 2025-05-25 14:03:31,099 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 10:03:47] 2025-05-25 14:03:31,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 10:03:47] 2025-05-25 14:03:31,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 10:03:47] 2025-05-25 14:03:31,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 10:03:47] 2025-05-25 14:03:31,104 | INFO     | fitting pss+swap vs Time
[2025-05-25 10:03:47] 2025-05-25 14:03:31,104 | INFO     | sum of square deviations: 8123490806.653186
[2025-05-25 10:03:47] 2025-05-25 14:03:31,106 | INFO     | sum of deviations: 68213781481.003296
[2025-05-25 10:03:47] 2025-05-25 14:03:31,106 | INFO     | mean x: 1748172723.0673401
[2025-05-25 10:03:47] 2025-05-25 14:03:31,106 | INFO     | mean y: 2456321.64983165
[2025-05-25 10:03:47] 2025-05-25 14:03:31,106 | INFO     | -- intersect: -14677128472.697449
[2025-05-25 10:03:47] 2025-05-25 14:03:31,106 | INFO     | intersect: -14677128472.697449
[2025-05-25 10:03:47] 2025-05-25 14:03:31,107 | INFO     | chi2: 2.490404065056228
[2025-05-25 10:03:47] 2025-05-25 14:03:31,107 | INFO     | sum of square deviations: 7720084691.630136
[2025-05-25 10:03:47] 2025-05-25 14:03:31,109 | INFO     | sum of deviations: 86301180897.54799
[2025-05-25 10:03:47] 2025-05-25 14:03:31,109 | INFO     | mean x: 1748172570.5684931
[2025-05-25 10:03:47] 2025-05-25 14:03:31,109 | INFO     | mean y: 2463057.47260274
[2025-05-25 10:03:47] 2025-05-25 14:03:31,109 | INFO     | -- intersect: -19539985410.26644
[2025-05-25 10:03:47] 2025-05-25 14:03:31,109 | INFO     | intersect: -19539985410.26644
[2025-05-25 10:03:47] 2025-05-25 14:03:31,110 | INFO     | chi2: 1.7101390584791318
[2025-05-25 10:03:47] 2025-05-25 14:03:31,110 | INFO     | current chi2=1.7101390584791318 (change=31.33085982011033 %)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,110 | INFO     | sum of square deviations: 7330242413.742159
[2025-05-25 10:03:47] 2025-05-25 14:03:31,112 | INFO     | sum of deviations: 84424559431.50526
[2025-05-25 10:03:47] 2025-05-25 14:03:31,112 | INFO     | mean x: 1748172418.0662022
[2025-05-25 10:03:47] 2025-05-25 14:03:31,112 | INFO     | mean y: 2462323.2891986063
[2025-05-25 10:03:47] 2025-05-25 14:03:31,112 | INFO     | -- intersect: -20131753965.228184
[2025-05-25 10:03:47] 2025-05-25 14:03:31,112 | INFO     | intersect: -20131753965.228184
[2025-05-25 10:03:47] 2025-05-25 14:03:31,113 | INFO     | chi2: 1.7098072145806518
[2025-05-25 10:03:47] 2025-05-25 14:03:31,113 | INFO     | current chi2=1.7098072145806518 (change=0.019404497946218673 %)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,113 | INFO     | right removable region: 286
[2025-05-25 10:03:47] 2025-05-25 14:03:31,113 | INFO     | sum of square deviations: 7720072491.630133
[2025-05-25 10:03:47] 2025-05-25 14:03:31,115 | INFO     | sum of deviations: 16790334583.465778
[2025-05-25 10:03:47] 2025-05-25 14:03:31,115 | INFO     | mean x: 1748172875.5684931
[2025-05-25 10:03:47] 2025-05-25 14:03:31,115 | INFO     | mean y: 2475637.8767123288
[2025-05-25 10:03:47] 2025-05-25 14:03:31,115 | INFO     | -- intersect: -3799613982.701006
[2025-05-25 10:03:47] 2025-05-25 14:03:31,115 | INFO     | intersect: -3799613982.701006
[2025-05-25 10:03:47] 2025-05-25 14:03:31,116 | INFO     | chi2: 0.8988864740101415
[2025-05-25 10:03:47] 2025-05-25 14:03:31,116 | INFO     | current chi2=0.8988864740101415 (change=63.905998764507856 %)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,116 | INFO     | sum of square deviations: 7330235826.606249
[2025-05-25 10:03:47] 2025-05-25 14:03:31,118 | INFO     | sum of deviations: 2862812241.6132317
[2025-05-25 10:03:47] 2025-05-25 14:03:31,118 | INFO     | mean x: 1748173028.0696864
[2025-05-25 10:03:47] 2025-05-25 14:03:31,118 | INFO     | mean y: 2481086.3693379792
[2025-05-25 10:03:47] 2025-05-25 14:03:31,118 | INFO     | -- intersect: -680265180.4084173
[2025-05-25 10:03:47] 2025-05-25 14:03:31,118 | INFO     | intersect: -680265180.4084173
[2025-05-25 10:03:47] 2025-05-25 14:03:31,119 | INFO     | chi2: 0.8284609912780139
[2025-05-25 10:03:47] 2025-05-25 14:03:31,119 | INFO     | current chi2=0.8284609912780139 (change=7.834747186476533 %)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,119 | INFO     | left removable region: 20
[2025-05-25 10:03:47] 2025-05-25 14:03:31,119 | INFO     | sum of square deviations: 5835995167.142836
[2025-05-25 10:03:47] 2025-05-25 14:03:31,121 | INFO     | sum of deviations: 10787193937.714287
[2025-05-25 10:03:47] 2025-05-25 14:03:31,121 | INFO     | mean x: 1748172997.5714285
[2025-05-25 10:03:47] 2025-05-25 14:03:31,121 | INFO     | mean y: 2492446.462406015
[2025-05-25 10:03:47] 2025-05-25 14:03:31,121 | INFO     | -- intersect: -3228812690.260436
[2025-05-25 10:03:47] 2025-05-25 14:03:31,121 | INFO     | intersect: -3228812690.260436
[2025-05-25 10:03:47] 2025-05-25 14:03:31,122 | INFO     | chi2: 0.002243562702233812
[2025-05-25 10:03:47] 2025-05-25 14:03:31,122 | INFO     | -- intersect: -3228812690.260436
[2025-05-25 10:03:47] 2025-05-25 14:03:31,122 | INFO     | current memory leak: 1.85 B/s (using 266 data points, chi2=0.00)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,122 | INFO     | ..............................
[2025-05-25 10:03:47] 2025-05-25 14:03:31,122 | INFO     | . Timing measurements:
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . get job = 0 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . initial setup = 1 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . payload setup = 14 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . stage-in = 0 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . payload execution = 18097 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . stage-out = 3 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | . log creation = 0 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,123 | INFO     | ..............................
[2025-05-25 10:03:47] 2025-05-25 14:03:31,207 | INFO     | 
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | job summary report
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | --------------------------------------------------
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | PanDA job id: 6665678263
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | task id: 44871837
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | errors: (none)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | pilot state: finished 
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | transexitcode: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | exeerrorcode: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | exeerrordiag: 
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | exitcode: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | exitmsg: OK
[2025-05-25 10:03:47] 2025-05-25 14:03:31,208 | INFO     | cpuconsumptiontime: 45938 s
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | nevents: 400
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | neventsw: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | pid: 44513
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | pgrp: 44513
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | corecount: 8
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | event service: False
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | sizes: {0: 2393568, 1: 2393767, 8: 2393973, 12: 2394001, 18114: 2426297, 18115: 2426296, 18118: 2435477, 18146: 2435591}
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | --------------------------------------------------
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | 
[2025-05-25 10:03:47] 2025-05-25 14:03:31,209 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-05-25 10:03:47] 2025-05-25 14:03:31,408 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 10:03:47] 2025-05-25 14:03:31,410 | INFO     | job 6665678263 has completed (purged errors)
[2025-05-25 10:03:47] 2025-05-25 14:03:31,411 | INFO     | overall cleanup function is called
[2025-05-25 10:03:47] 2025-05-25 14:03:32,418 | INFO     | --- collectZombieJob: --- 10, [44513]
[2025-05-25 10:03:47] 2025-05-25 14:03:32,418 | INFO     | zombie collector waiting for pid 44513
[2025-05-25 10:03:47] 2025-05-25 14:03:32,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 10:03:47] 2025-05-25 14:03:32,419 | INFO     | collected zombie processes
[2025-05-25 10:03:47] 2025-05-25 14:03:32,419 | INFO     | will attempt to kill all subprocesses of pid=44513
[2025-05-25 10:03:47] 2025-05-25 14:03:32,843 | INFO     | process IDs to be killed: [44513] (in reverse order)
[2025-05-25 10:03:47] 2025-05-25 14:03:32,966 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 10:03:47] 2025-05-25 14:03:32,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 10:03:47] 2025-05-25 14:03:32,977 | INFO     | did not find any defunct processes belonging to 44513
[2025-05-25 10:03:47] 2025-05-25 14:03:32,987 | INFO     | did not find any defunct processes belonging to 44513
[2025-05-25 10:03:47] 2025-05-25 14:03:32,987 | INFO     | ready for new job
[2025-05-25 10:03:47] 2025-05-25 14:03:32,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 10:03:47] 2025-05-25 14:03:32,989 | INFO     | **************************************
[2025-05-25 10:03:47] 2025-05-25 14:03:32,989 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 10:03:47] 2025-05-25 14:03:32,989 | INFO     | **************************************
[2025-05-25 10:03:47] 2025-05-25 14:03:32,989 | INFO     | 
[2025-05-25 10:03:47] 2025-05-25 14:03:32,994 | INFO     | architecture information:
[2025-05-25 10:03:47] 2025-05-25 14:03:32,997 | INFO     | executing command: cat /etc/os-release
[2025-05-25 10:03:47] 2025-05-25 14:03:33,028 | INFO     | cat /etc/os-release:
[2025-05-25 10:03:47] NAME="CentOS Linux"
[2025-05-25 10:03:47] VERSION="7 (Core)"
[2025-05-25 10:03:47] ID="centos"
[2025-05-25 10:03:47] ID_LIKE="rhel fedora"
[2025-05-25 10:03:47] VERSION_ID="7"
[2025-05-25 10:03:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 10:03:47] ANSI_COLOR="0;31"
[2025-05-25 10:03:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 10:03:47] HOME_URL="https://www.centos.org/"
[2025-05-25 10:03:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 10:03:47] 
[2025-05-25 10:03:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 10:03:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 10:03:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 10:03:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 10:03:47] 
[2025-05-25 10:03:47] 2025-05-25 14:03:33,028 | INFO     | **************************************
[2025-05-25 10:03:47] 2025-05-25 14:03:33,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-05-25 10:03:47] 2025-05-25 14:03:33,711 | INFO     | sufficient remaining disk space (102711164928 B)
[2025-05-25 10:03:47] 2025-05-25 14:03:33,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 10:03:47] 2025-05-25 14:03:33,711 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 10:03:47] 2025-05-25 14:03:33,711 | INFO     | update_server=False
[2025-05-25 10:03:47] 2025-05-25 14:03:33,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 10:03:47] 2025-05-25 14:03:33,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 10:03:47] 2025-05-25 14:03:33,713 | INFO     | aborting loop
[2025-05-25 10:03:47] 2025-05-25 14:03:33,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 10:03:47] 2025-05-25 14:03:33,716 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 10:03:47] 2025-05-25 14:03:33,716 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 10:03:47] 2025-05-25 14:03:33,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 10:03:47] 2025-05-25 14:03:33,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 10:03:47] 2025-05-25 14:03:33,720 | INFO     | all job control threads have been joined
[2025-05-25 10:03:47] 2025-05-25 14:03:34,529 | INFO     | all data control threads have been joined
[2025-05-25 10:03:47] 2025-05-25 14:03:34,717 | INFO     | [job] retrieve thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:34,718 | INFO     | [job] job monitor thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:34,726 | INFO     | [job] control thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:34,871 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,230 | INFO     | all payload control threads have been joined
[2025-05-25 10:03:47] 2025-05-25 14:03:35,243 | INFO     | [data] copytool_in thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,255 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,267 | INFO     | [payload] failed_post thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,535 | INFO     | [data] control thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,666 | INFO     | [payload] validate_post thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,711 | INFO     | [job] validate thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:35,719 | INFO     | [data] copytool_out thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:36,062 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:36,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 10:03:47] 2025-05-25 14:03:36,236 | INFO     | [payload] control thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:36,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 10:03:47] 2025-05-25 14:03:37,229 | INFO     | [job] queue monitor thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:40,341 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 10:03:47] 2025-05-25 14:03:41,185 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082408699712)>', '<ExcThread(monitor, started 140081834751744)>']
[2025-05-25 10:03:47] 2025-05-25 14:03:41,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 10:03:47] 2025-05-25 14:03:41,785 | INFO     | [monitor] control thread has ended
[2025-05-25 10:03:47] 2025-05-25 14:03:46,211 | INFO     | all workflow threads have been joined
[2025-05-25 10:03:47] 2025-05-25 14:03:46,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 10:03:47] 2025-05-25 14:03:46,212 | INFO     | traces error code: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:46,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 10:03:47] 2025-05-25 14:03:46,337 [wrapper] ==== pilot stdout END ====
[2025-05-25 10:03:47] 2025-05-25 14:03:46,364 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 10:03:47] 2025-05-25 14:03:46,377 [wrapper] pilotpid: 96330
[2025-05-25 10:03:47] 2025-05-25 14:03:46,381 [wrapper] Pilot exit status: 0
[2025-05-25 10:03:47] 2025-05-25 14:03:46,451 [wrapper] pandaids: 6665678263 6665678263
[2025-05-25 10:03:47] 2025-05-25 14:03:46,758 [wrapper] cleanup supervisor_pilot 33798 96331
[2025-05-25 10:03:47] 2025-05-25 14:03:46,804 [wrapper] Test setup, not cleaning
[2025-05-25 10:03:47] 2025-05-25 14:03:46,811 [wrapper] apfmon messages muted
[2025-05-25 10:03:47] 2025-05-25 14:03:46,853 [wrapper] ==== wrapper stdout END ====
[2025-05-25 10:03:47] 2025-05-25 14:03:46,856 [wrapper] ==== wrapper stderr END ====
[2025-05-25 10:03:47]  *** Error codes and diagnostics ***
[2025-05-25 10:03:47]     "exeErrorCode": 0,
[2025-05-25 10:03:47]     "exeErrorDiag": "",
[2025-05-25 10:03:47]     "pilotErrorCode": 0,
[2025-05-25 10:03:47]     "pilotErrorDiag": "",
[2025-05-25 10:03:47]  *** Listing of results directory ***
[2025-05-25 10:03:47] total 638356
[2025-05-25 10:03:47] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas      5111 May 24 15:08 queuedata.json
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas    495897 May 24 15:08 pilot3.tar.gz
[2025-05-25 10:03:47] -rwx------ 1 boincer umatlas     37140 May 24 15:09 runpilot2-wrapper.sh
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas       100 May 25 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 10:03:47] -rwxr-xr-x 1 boincer umatlas      7986 May 25 04:02 run_atlas
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas       105 May 25 04:02 job.xml
[2025-05-25 10:03:47] -rw-r--r-- 3 boincer umatlas 224030766 May 25 04:02 EVNT.44871834._000903.pool.root.1
[2025-05-25 10:03:47] -rw-r--r-- 3 boincer umatlas 224030766 May 25 04:02 ATLAS.root_0
[2025-05-25 10:03:47] -rw-r--r-- 2 boincer umatlas     15093 May 25 04:02 start_atlas.sh
[2025-05-25 10:03:47] drwxrwx--x 2 boincer umatlas      4096 May 25 04:02 shared
[2025-05-25 10:03:47] -rw-r--r-- 2 boincer umatlas    508879 May 25 04:02 input.tar.gz
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas         0 May 25 04:02 boinc_lockfile
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas      2558 May 25 05:00 pandaJob.out
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas    990811 May 25 05:00 agis_schedconf.cvmfs.json
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas      6387 May 25 10:01 init_data.xml
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas 197843707 May 25 10:02 HITS.44871837._022649.pool.root.1
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas       531 May 25 10:02 boinc_task_state.xml
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas        95 May 25 10:02 pilot_heartbeat.json
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas      1076 May 25 10:02 memory_monitor_summary.json
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas   1596740 May 25 10:03 agis_ddmendpoints.agis.ALL.json
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas    422547 May 25 10:03 log.44871837._022649.job.log.tgz.1
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas      7740 May 25 10:03 heartbeat.json
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas      4477 May 25 10:03 pilotlog.txt
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas   1547211 May 25 10:03 log.44871837._022649.job.log.1
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas        28 May 25 10:03 wrapper_checkpoint.txt
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas       357 May 25 10:03 output.list
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas       620 May 25 10:03 runtime_log
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas   1986560 May 25 10:03 result.tar.gz
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas      8740 May 25 10:03 runtime_log.err
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas       786 May 25 10:03 0EcMDmeQ9c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjMSKDmcKbkQo.diag
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas      8192 May 25 10:03 boinc_mmap_file
[2025-05-25 10:03:47] -rw-r--r-- 1 boincer umatlas     23085 May 25 10:03 stderr.txt
[2025-05-25 10:03:47] HITS file was successfully produced:
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas 197843707 May 25 10:02 shared/HITS.pool.root.1
[2025-05-25 10:03:47]  *** Contents of shared directory: ***
[2025-05-25 10:03:47] total 414452
[2025-05-25 10:03:47] -rw-r--r-- 3 boincer umatlas 224030766 May 25 04:02 ATLAS.root_0
[2025-05-25 10:03:47] -rw-r--r-- 2 boincer umatlas     15093 May 25 04:02 start_atlas.sh
[2025-05-25 10:03:47] -rw-r--r-- 2 boincer umatlas    508879 May 25 04:02 input.tar.gz
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas 197843707 May 25 10:02 HITS.pool.root.1
[2025-05-25 10:03:47] -rw------- 1 boincer umatlas   1986560 May 25 10:03 result.tar.gz
10:03:48 (74837): run_atlas exited; CPU time 45482.808952
10:03:48 (74837): called boinc_finish(0)

</stderr_txt>
]]>

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