Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:38 (1395): wrapper (7.7.26015): starting
13:43:38 (1395): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 13:43:38] Arguments: --nthreads 8
[2025-05-25 13:43:38] Threads: 8
[2025-05-25 13:43:38] Checking for CVMFS
[2025-05-25 13:43:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 13:43:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 13:43:39] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 13:43:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 13:43:41] 2.11.2.0 347 18725 90788 146401 0 227 20946565 25165825 3219 130560 0 10040911 99.776 12339649 2315 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-25 13:43:41] CVMFS is ok
[2025-05-25 13:43:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 13:43:41] Checking for apptainer binary...
[2025-05-25 13:43:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 13:43:41] Running /usr/bin/apptainer --version
[2025-05-25 13:43:41] apptainer version 1.3.2-1.el7
[2025-05-25 13:43:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 13:48:05] cg-vwn289.simple-grid.lan
[2025-05-25 13:48:05] apptainer works
[2025-05-25 13:48:05] Set ATHENA_PROC_NUMBER=8
[2025-05-25 13:48:05] Set ATHENA_CORE_NUMBER=8
[2025-05-25 13:48:05] Starting ATLAS job with PandaID=6665684231
[2025-05-25 13:48:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 19:32:18]  *** The last 200 lines of the pilot log: ***
[2025-05-25 19:32:18] 2025-05-25 17:05:17,511 | INFO     | extracted standard info from prmon json
[2025-05-25 19:32:18] 2025-05-25 17:05:17,511 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 19:32:18] 2025-05-25 17:05:17,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 19:32:18] 2025-05-25 17:05:17,511 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 19:32:18] 2025-05-25 17:05:17,512 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 19:32:18] 2025-05-25 17:05:17,520 | INFO     | fitting pss+swap vs Time
[2025-05-25 19:32:18] 2025-05-25 17:05:17,521 | INFO     | sum of square deviations: 8625843592.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,524 | INFO     | sum of deviations: 19892203455.999996
[2025-05-25 19:32:18] 2025-05-25 17:05:17,524 | INFO     | mean x: 1748183377.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,525 | INFO     | mean y: 2486901.891089109
[2025-05-25 19:32:18] 2025-05-25 17:05:17,525 | INFO     | -- intersect: -4029028281.8450575
[2025-05-25 19:32:18] 2025-05-25 17:05:17,525 | INFO     | intersect: -4029028281.8450575
[2025-05-25 19:32:18] 2025-05-25 17:05:17,525 | INFO     | chi2: 2.3063576831680046
[2025-05-25 19:32:18] 2025-05-25 17:05:17,526 | INFO     | sum of square deviations: 8205826414.5
[2025-05-25 19:32:18] 2025-05-25 17:05:17,529 | INFO     | sum of deviations: 39559134095.00001
[2025-05-25 19:32:18] 2025-05-25 17:05:17,529 | INFO     | mean x: 1748183224.5
[2025-05-25 19:32:18] 2025-05-25 17:05:17,529 | INFO     | mean y: 2493944.912751678
[2025-05-25 19:32:18] 2025-05-25 17:05:17,530 | INFO     | -- intersect: -8425251306.732188
[2025-05-25 19:32:18] 2025-05-25 17:05:17,530 | INFO     | intersect: -8425251306.732188
[2025-05-25 19:32:18] 2025-05-25 17:05:17,530 | INFO     | chi2: 1.5330445595003375
[2025-05-25 19:32:18] 2025-05-25 17:05:17,530 | INFO     | current chi2=1.5330445595003375 (change=33.52962679255574 %)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,531 | INFO     | sum of square deviations: 7799669962.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,534 | INFO     | sum of deviations: 38790307357.999985
[2025-05-25 19:32:18] 2025-05-25 17:05:17,534 | INFO     | mean x: 1748183072.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,534 | INFO     | mean y: 2493656.215017065
[2025-05-25 19:32:18] 2025-05-25 17:05:17,534 | INFO     | -- intersect: -8691792000.910921
[2025-05-25 19:32:18] 2025-05-25 17:05:17,535 | INFO     | intersect: -8691792000.910921
[2025-05-25 19:32:18] 2025-05-25 17:05:17,535 | INFO     | chi2: 1.533544650555156
[2025-05-25 19:32:18] 2025-05-25 17:05:17,535 | INFO     | current chi2=1.533544650555156 (change=-0.03262077750574404 %)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,535 | INFO     | right removable region: 292
[2025-05-25 19:32:18] 2025-05-25 17:05:17,539 | INFO     | sum of square deviations: 8205826414.5
[2025-05-25 19:32:18] 2025-05-25 17:05:17,542 | INFO     | sum of deviations: -26194796717.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,543 | INFO     | mean x: 1748183529.5
[2025-05-25 19:32:18] 2025-05-25 17:05:17,543 | INFO     | mean y: 2503510.3422818794
[2025-05-25 19:32:18] 2025-05-25 17:05:17,543 | INFO     | -- intersect: 5583088556.394632
[2025-05-25 19:32:18] 2025-05-25 17:05:17,543 | INFO     | intersect: 5583088556.394632
[2025-05-25 19:32:18] 2025-05-25 17:05:17,543 | INFO     | chi2: 0.8846448105963086
[2025-05-25 19:32:18] 2025-05-25 17:05:17,544 | INFO     | current chi2=0.8846448105963086 (change=61.6432083777585 %)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,544 | INFO     | sum of square deviations: 7799669962.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,547 | INFO     | sum of deviations: -27543716251.999992
[2025-05-25 19:32:18] 2025-05-25 17:05:17,547 | INFO     | mean x: 1748183682.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,547 | INFO     | mean y: 2504004.0887372014
[2025-05-25 19:32:18] 2025-05-25 17:05:17,548 | INFO     | -- intersect: 6176031285.111989
[2025-05-25 19:32:18] 2025-05-25 17:05:17,548 | INFO     | intersect: 6176031285.111989
[2025-05-25 19:32:18] 2025-05-25 17:05:17,548 | INFO     | chi2: 0.8735568067046512
[2025-05-25 19:32:18] 2025-05-25 17:05:17,548 | INFO     | current chi2=0.8735568067046512 (change=1.2533848340989404 %)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,548 | INFO     | left removable region: 20
[2025-05-25 19:32:18] 2025-05-25 17:05:17,549 | INFO     | sum of square deviations: 6239923508.0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,552 | INFO     | sum of deviations: 11496459549.999998
[2025-05-25 19:32:18] 2025-05-25 17:05:17,552 | INFO     | mean x: 1748183651.5
[2025-05-25 19:32:18] 2025-05-25 17:05:17,552 | INFO     | mean y: 2503381.455882353
[2025-05-25 19:32:18] 2025-05-25 17:05:17,552 | INFO     | -- intersect: -3218357036.09157
[2025-05-25 19:32:18] 2025-05-25 17:05:17,552 | INFO     | intersect: -3218357036.09157
[2025-05-25 19:32:18] 2025-05-25 17:05:17,553 | INFO     | chi2: 0.001956084780498201
[2025-05-25 19:32:18] 2025-05-25 17:05:17,553 | INFO     | -- intersect: -3218357036.09157
[2025-05-25 19:32:18] 2025-05-25 17:05:17,553 | INFO     | current memory leak: 1.84 B/s (using 272 data points, chi2=0.00)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | ..............................
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . Timing measurements:
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . get job = 0 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . initial setup = 8 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . payload setup = 90 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . stage-in = 0 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,554 | INFO     | . payload execution = 18494 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,555 | INFO     | . stage-out = 3 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,555 | INFO     | . log creation = 1 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,555 | INFO     | ..............................
[2025-05-25 19:32:18] 2025-05-25 17:05:17,979 | INFO     | 
[2025-05-25 19:32:18] 2025-05-25 17:05:17,979 | INFO     | job summary report
[2025-05-25 19:32:18] 2025-05-25 17:05:17,979 | INFO     | --------------------------------------------------
[2025-05-25 19:32:18] 2025-05-25 17:05:17,979 | INFO     | PanDA job id: 6665684231
[2025-05-25 19:32:18] 2025-05-25 17:05:17,979 | INFO     | task id: 44871837
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | errors: (none)
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | pilot state: finished 
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | transexitcode: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | exeerrorcode: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | exeerrordiag: 
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | exitcode: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,980 | INFO     | exitmsg: OK
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | cpuconsumptiontime: 70967 s
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | nevents: 400
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | neventsw: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | pid: 19767
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | pgrp: 19767
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | corecount: 8
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | event service: False
[2025-05-25 19:32:18] 2025-05-25 17:05:17,981 | INFO     | sizes: {0: 2393568, 1: 2393767, 12: 2393767, 22: 2393795, 33: 2393823, 44: 2393879, 55: 2394035, 65: 2394063, 76: 2394091, 86: 2394353, 87: 2394381, 18589: 2426512
[2025-05-25 19:32:18] 2025-05-25 17:05:17,982 | INFO     | --------------------------------------------------
[2025-05-25 19:32:18] 2025-05-25 17:05:17,982 | INFO     | 
[2025-05-25 19:32:18] 2025-05-25 17:05:17,982 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 19:32:18] 2025-05-25 17:05:18,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 19:32:18] 2025-05-25 17:05:18,162 | INFO     | job 6665684231 has completed (purged errors)
[2025-05-25 19:32:18] 2025-05-25 17:05:18,162 | INFO     | overall cleanup function is called
[2025-05-25 19:32:18] 2025-05-25 17:05:19,170 | INFO     | --- collectZombieJob: --- 10, [19767]
[2025-05-25 19:32:18] 2025-05-25 17:05:19,170 | INFO     | zombie collector waiting for pid 19767
[2025-05-25 19:32:18] 2025-05-25 17:05:19,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 19:32:18] 2025-05-25 17:05:19,170 | INFO     | collected zombie processes
[2025-05-25 19:32:18] 2025-05-25 17:05:19,170 | INFO     | will attempt to kill all subprocesses of pid=19767
[2025-05-25 19:32:18] 2025-05-25 17:05:19,267 | INFO     | process IDs to be killed: [19767] (in reverse order)
[2025-05-25 19:32:18] 2025-05-25 17:05:20,219 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 19:32:18] 2025-05-25 17:05:20,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 19:32:18] 2025-05-25 17:05:20,222 | INFO     | did not find any defunct processes belonging to 19767
[2025-05-25 19:32:18] 2025-05-25 17:05:20,225 | INFO     | did not find any defunct processes belonging to 19767
[2025-05-25 19:32:18] 2025-05-25 17:05:20,225 | INFO     | ready for new job
[2025-05-25 19:32:18] 2025-05-25 17:05:20,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 19:32:18] 2025-05-25 17:05:20,227 | INFO     | **************************************
[2025-05-25 19:32:18] 2025-05-25 17:05:20,228 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 19:32:18] 2025-05-25 17:05:20,228 | INFO     | **************************************
[2025-05-25 19:32:18] 2025-05-25 17:05:20,228 | INFO     | 
[2025-05-25 19:32:18] 2025-05-25 17:05:20,229 | INFO     | pilot is running in a VM
[2025-05-25 19:32:18] 2025-05-25 17:05:20,229 | INFO     | architecture information:
[2025-05-25 19:32:18] 2025-05-25 17:05:20,247 | INFO     | executing command: cat /etc/os-release
[2025-05-25 19:32:18] 2025-05-25 17:05:20,481 | INFO     | cat /etc/os-release:
[2025-05-25 19:32:18] NAME="CentOS Linux"
[2025-05-25 19:32:18] VERSION="7 (Core)"
[2025-05-25 19:32:18] ID="centos"
[2025-05-25 19:32:18] ID_LIKE="rhel fedora"
[2025-05-25 19:32:18] VERSION_ID="7"
[2025-05-25 19:32:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 19:32:18] ANSI_COLOR="0;31"
[2025-05-25 19:32:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 19:32:18] HOME_URL="https://www.centos.org/"
[2025-05-25 19:32:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 19:32:18] 
[2025-05-25 19:32:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 19:32:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 19:32:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 19:32:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 19:32:18] 
[2025-05-25 19:32:18] 2025-05-25 17:05:20,481 | INFO     | **************************************
[2025-05-25 19:32:18] 2025-05-25 17:05:20,985 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-25 19:32:18] 2025-05-25 17:05:21,241 | INFO     | sufficient remaining disk space (492355715072 B)
[2025-05-25 19:32:18] 2025-05-25 17:05:21,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 19:32:18] 2025-05-25 17:05:21,242 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 19:32:18] 2025-05-25 17:05:21,242 | INFO     | update_server=False
[2025-05-25 19:32:18] 2025-05-25 17:05:21,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 19:32:18] 2025-05-25 17:05:21,245 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 19:32:18] 2025-05-25 17:05:21,245 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 19:32:18] 2025-05-25 17:05:21,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 19:32:18] 2025-05-25 17:05:21,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 19:32:18] 2025-05-25 17:05:21,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 19:32:18] 2025-05-25 17:05:21,251 | INFO     | aborting loop
[2025-05-25 19:32:18] 2025-05-25 17:05:21,446 | INFO     | all payload control threads have been joined
[2025-05-25 19:32:18] 2025-05-25 17:05:21,662 | INFO     | all data control threads have been joined
[2025-05-25 19:32:18] 2025-05-25 17:05:22,156 | INFO     | all job control threads have been joined
[2025-05-25 19:32:18] 2025-05-25 17:05:22,248 | INFO     | [job] retrieve thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:22,257 | INFO     | [job] job monitor thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:22,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 19:32:18] 2025-05-25 17:05:22,452 | INFO     | [payload] control thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:22,669 | INFO     | [data] control thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:22,703 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:22,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 19:32:18] 2025-05-25 17:05:23,098 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,120 | INFO     | [payload] validate_post thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,148 | INFO     | [payload] failed_post thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,161 | INFO     | [job] control thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,596 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,678 | INFO     | [data] copytool_in thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,697 | INFO     | [job] validate thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:23,740 | INFO     | [job] queue monitor thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:24,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 19:32:18] 2025-05-25 17:05:24,304 | INFO     | [data] copytool_out thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:28,267 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 19:32:18] 2025-05-25 17:05:30,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074436200256)>', '<ExcThread(monitor, started 140073773295360)>']
[2025-05-25 19:32:18] 2025-05-25 17:05:30,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 19:32:18] 2025-05-25 17:05:30,300 | INFO     | [monitor] control thread has ended
[2025-05-25 19:32:18] 2025-05-25 17:05:35,318 | INFO     | all workflow threads have been joined
[2025-05-25 19:32:18] 2025-05-25 17:05:35,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 19:32:18] 2025-05-25 17:05:35,318 | INFO     | traces error code: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:35,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 19:32:18] 2025-05-25 17:05:35,632 [wrapper] ==== pilot stdout END ====
[2025-05-25 19:32:18] 2025-05-25 17:05:35,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 19:32:18] 2025-05-25 17:05:35,812 [wrapper] pilotpid: 5127
[2025-05-25 19:32:18] 2025-05-25 17:05:35,917 [wrapper] Pilot exit status: 0
[2025-05-25 19:32:18] 2025-05-25 17:05:36,290 [wrapper] pandaids: 6665684231
[2025-05-25 19:32:18] 2025-05-25 17:05:37,297 [wrapper] cleanup supervisor_pilot 13778 5128
[2025-05-25 19:32:18] 2025-05-25 17:05:37,383 [wrapper] Test setup, not cleaning
[2025-05-25 19:32:18] 2025-05-25 17:05:37,429 [wrapper] apfmon messages muted
[2025-05-25 19:32:18] 2025-05-25 17:05:37,535 [wrapper] ==== wrapper stdout END ====
[2025-05-25 19:32:18] 2025-05-25 17:05:37,598 [wrapper] ==== wrapper stderr END ====
[2025-05-25 19:32:18]  *** Error codes and diagnostics ***
[2025-05-25 19:32:18]     "exeErrorCode": 0,
[2025-05-25 19:32:18]     "exeErrorDiag": "",
[2025-05-25 19:32:18]     "pilotErrorCode": 0,
[2025-05-25 19:32:18]     "pilotErrorDiag": "",
[2025-05-25 19:32:18]  *** Listing of results directory ***
[2025-05-25 19:32:18] total 417484
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc    495897 May 25 02:23 pilot3.tar.gz
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc      5111 May 25 02:28 queuedata.json
[2025-05-25 19:32:18] -rwx------. 1 boinc boinc     37140 May 25 02:28 runpilot2-wrapper.sh
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc       100 May 25 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 19:32:18] -rwxr-xr-x. 1 boinc boinc      7986 May 25 13:43 run_atlas
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc       105 May 25 13:43 job.xml
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc      6371 May 25 13:43 init_data.xml
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc 224626202 May 25 13:43 EVNT.44871834._001055.pool.root.1
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc     15093 May 25 13:43 start_atlas.sh
[2025-05-25 19:32:18] drwxrwx--x. 2 boinc boinc        68 May 25 13:43 shared
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc    508876 May 25 13:43 input.tar.gz
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc         0 May 25 13:43 boinc_lockfile
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc      2558 May 25 13:48 pandaJob.out
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc    990811 May 25 13:50 agis_schedconf.cvmfs.json
[2025-05-25 19:32:18] drwx------. 4 boinc boinc      4096 May 25 13:51 pilot3
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc 195019576 May 25 19:02 HITS.44871837._026452.pool.root.1
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc       531 May 25 19:02 boinc_task_state.xml
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc      1016 May 25 19:03 memory_monitor_summary.json
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc   1596740 May 25 19:03 agis_ddmendpoints.agis.ALL.json
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc    412109 May 25 19:03 log.44871837._026452.job.log.tgz.1
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc        95 May 25 19:04 pilot_heartbeat.json
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc      7685 May 25 19:05 heartbeat.json
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc      4539 May 25 19:05 pilotlog.txt
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc   1605060 May 25 19:05 log.44871837._026452.job.log.1
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc       357 May 25 19:05 output.list
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc       620 May 25 19:05 runtime_log
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc   2037760 May 25 19:05 result.tar.gz
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc      8659 May 25 19:05 runtime_log.err
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc       656 May 25 19:05 0WiKDmjPEd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzbNKDmZZgaVm.diag
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc      8192 May 25 19:32 boinc_mmap_file
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc        28 May 25 19:32 wrapper_checkpoint.txt
[2025-05-25 19:32:18] -rw-r--r--. 1 boinc boinc     20511 May 25 19:32 stderr.txt
[2025-05-25 19:32:18] HITS file was successfully produced:
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc 195019576 May 25 19:02 shared/HITS.pool.root.1
[2025-05-25 19:32:18]  *** Contents of shared directory: ***
[2025-05-25 19:32:18] total 412324
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc 224626202 May 25 13:43 ATLAS.root_0
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc     15093 May 25 13:43 start_atlas.sh
[2025-05-25 19:32:18] -rw-r--r--. 2 boinc boinc    508876 May 25 13:43 input.tar.gz
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc 195019576 May 25 19:02 HITS.pool.root.1
[2025-05-25 19:32:18] -rw-------. 1 boinc boinc   2037760 May 25 19:05 result.tar.gz
19:32:20 (1395): run_atlas exited; CPU time 71219.482963
19:32:20 (1395): called boinc_finish(0)

</stderr_txt>
]]>

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