Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:33:20 (219009): wrapper (7.7.26015): starting
02:33:20 (219009): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 02:33:20] Arguments: --nthreads 8
[2025-05-25 02:33:20] Threads: 8
[2025-05-25 02:33:20] Checking for CVMFS
[2025-05-25 02:33:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 02:33:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 02:33:20] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 02:33:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 02:33:21] 2.11.2.0 7082 14028 144788 146393 1 334 17163462 18432000 21003 130560 0 50817740 99.341 67952171 34688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 02:33:21] CVMFS is ok
[2025-05-25 02:33:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 02:33:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 02:33:21] Further information can be found at the LHC@home message board.
[2025-05-25 02:33:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 02:33:21] Checking for apptainer binary...
[2025-05-25 02:33:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 02:33:21] Running /usr/bin/apptainer --version
[2025-05-25 02:33:21] apptainer version 1.3.2-1.el7
[2025-05-25 02:33:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 02:33:22] c-211-35-3.aglt2.org
[2025-05-25 02:33:22] apptainer works
[2025-05-25 02:33:22] Set ATHENA_PROC_NUMBER=8
[2025-05-25 02:33:22] Set ATHENA_CORE_NUMBER=8
[2025-05-25 02:33:22] Starting ATLAS job with PandaID=6665684181
[2025-05-25 02:33:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:02 (219009): BOINC client no longer exists - exiting
07:20:03 (219009): timer handler: client dead, exiting
07:27:54 (14567): wrapper (7.7.26015): starting
07:27:54 (14567): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 07:27:54] Arguments: --nthreads 8
[2025-05-25 07:27:54] Threads: 8
[2025-05-25 07:27:54] This job has been restarted, cleaning up previous attempt
[2025-05-25 07:27:54] Checking for CVMFS
[2025-05-25 07:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 07:27:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 07:27:56] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 07:27:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 07:27:57] 2.11.2.0 7082 14322 142220 146401 3 331 18425427 18432001 19142 130560 0 51793642 99.351 68420435 34001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 07:27:57] CVMFS is ok
[2025-05-25 07:27:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 07:27:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 07:27:57] Further information can be found at the LHC@home message board.
[2025-05-25 07:27:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 07:27:57] Checking for apptainer binary...
[2025-05-25 07:27:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 07:27:57] Running /usr/bin/apptainer --version
[2025-05-25 07:27:57] apptainer version 1.3.2-1.el7
[2025-05-25 07:27:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 07:28:04] c-211-35-3.aglt2.org
[2025-05-25 07:28:04] apptainer works
[2025-05-25 07:28:04] Set ATHENA_PROC_NUMBER=8
[2025-05-25 07:28:04] Set ATHENA_CORE_NUMBER=8
[2025-05-25 07:28:05] Starting ATLAS job with PandaID=6665684181
[2025-05-25 07:28:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 15:28:05]  *** The last 200 lines of the pilot log: ***
[2025-05-25 15:28:05] 2025-05-25 19:27:48,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 15:28:05] 2025-05-25 19:27:48,259 | INFO     | PID=37638 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-25 15:28:05] 2025-05-25 19:27:48,259 | INFO     | .. there are 17 such processes running
[2025-05-25 15:28:05] 2025-05-25 19:27:50,696 | INFO     | monitor loop #1720: job 0:6665684181 is in state 'finished'
[2025-05-25 15:28:05] 2025-05-25 19:27:50,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,847 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-25 15:28:05] 2025-05-25 19:27:50,847 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6665684181/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,848 | INFO     | extracted standard info from prmon json
[2025-05-25 15:28:05] 2025-05-25 19:27:50,848 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 15:28:05] 2025-05-25 19:27:50,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 15:28:05] 2025-05-25 19:27:50,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 15:28:05] 2025-05-25 19:27:50,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 15:28:05] 2025-05-25 19:27:50,853 | INFO     | fitting pss+swap vs Time
[2025-05-25 15:28:05] 2025-05-25 19:27:50,853 | INFO     | sum of square deviations: 31988571317.53514
[2025-05-25 15:28:05] 2025-05-25 19:27:50,857 | INFO     | sum of deviations: 212161968676.80386
[2025-05-25 15:28:05] 2025-05-25 19:27:50,858 | INFO     | mean x: 1748186972.3560767
[2025-05-25 15:28:05] 2025-05-25 19:27:50,858 | INFO     | mean y: 2450248.8933901917
[2025-05-25 15:28:05] 2025-05-25 19:27:50,858 | INFO     | -- intersect: -11592277942.887133
[2025-05-25 15:28:05] 2025-05-25 19:27:50,858 | INFO     | intersect: -11592277942.887133
[2025-05-25 15:28:05] 2025-05-25 19:27:50,858 | INFO     | chi2: 4.654115102109682
[2025-05-25 15:28:05] 2025-05-25 19:27:50,859 | INFO     | sum of square deviations: 30976398621.89451
[2025-05-25 15:28:05] 2025-05-25 19:27:50,864 | INFO     | sum of deviations: 241317158138.05576
[2025-05-25 15:28:05] 2025-05-25 19:27:50,864 | INFO     | mean x: 1748186819.8599138
[2025-05-25 15:28:05] 2025-05-25 19:27:50,864 | INFO     | mean y: 2454599.400862069
[2025-05-25 15:28:05] 2025-05-25 19:27:50,864 | INFO     | -- intersect: -13616542250.827503
[2025-05-25 15:28:05] 2025-05-25 19:27:50,864 | INFO     | intersect: -13616542250.827503
[2025-05-25 15:28:05] 2025-05-25 19:27:50,865 | INFO     | chi2: 3.8301721497190493
[2025-05-25 15:28:05] 2025-05-25 19:27:50,865 | INFO     | current chi2=3.8301721497190493 (change=17.703536210721218 %)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,865 | INFO     | right removable region: 463
[2025-05-25 15:28:05] 2025-05-25 19:27:50,866 | INFO     | sum of square deviations: 30976296751.894505
[2025-05-25 15:28:05] 2025-05-25 19:27:50,870 | INFO     | sum of deviations: 70605703347.9031
[2025-05-25 15:28:05] 2025-05-25 19:27:50,871 | INFO     | mean x: 1748187124.8599138
[2025-05-25 15:28:05] 2025-05-25 19:27:50,871 | INFO     | mean y: 2471551.0754310344
[2025-05-25 15:28:05] 2025-05-25 19:27:50,871 | INFO     | -- intersect: -3982252075.6096616
[2025-05-25 15:28:05] 2025-05-25 19:27:50,871 | INFO     | intersect: -3982252075.6096616
[2025-05-25 15:28:05] 2025-05-25 19:27:50,872 | INFO     | chi2: 1.2027026836098136
[2025-05-25 15:28:05] 2025-05-25 19:27:50,872 | INFO     | current chi2=1.2027026836098136 (change=74.15829524575712 %)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,872 | INFO     | sum of square deviations: 29985603986.239555
[2025-05-25 15:28:05] 2025-05-25 19:27:50,877 | INFO     | sum of deviations: 29771460834.923748
[2025-05-25 15:28:05] 2025-05-25 19:27:50,877 | INFO     | mean x: 1748187277.3638344
[2025-05-25 15:28:05] 2025-05-25 19:27:50,877 | INFO     | mean y: 2477826.8387799566
[2025-05-25 15:28:05] 2025-05-25 19:27:50,877 | INFO     | -- intersect: -1733224715.0887868
[2025-05-25 15:28:05] 2025-05-25 19:27:50,877 | INFO     | intersect: -1733224715.0887868
[2025-05-25 15:28:05] 2025-05-25 19:27:50,878 | INFO     | chi2: 0.9280743912550813
[2025-05-25 15:28:05] 2025-05-25 19:27:50,878 | INFO     | current chi2=0.9280743912550813 (change=22.834262872887084 %)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,878 | INFO     | left removable region: 20
[2025-05-25 15:28:05] 2025-05-25 19:27:50,879 | INFO     | sum of square deviations: 26957884721.544025
[2025-05-25 15:28:05] 2025-05-25 19:27:50,883 | INFO     | sum of deviations: 32987338547.613987
[2025-05-25 15:28:05] 2025-05-25 19:27:50,883 | INFO     | mean x: 1748187399.3724606
[2025-05-25 15:28:05] 2025-05-25 19:27:50,883 | INFO     | mean y: 2486900.6568848756
[2025-05-25 15:28:05] 2025-05-25 19:27:50,883 | INFO     | -- intersect: -2136703550.7988794
[2025-05-25 15:28:05] 2025-05-25 19:27:50,883 | INFO     | intersect: -2136703550.7988794
[2025-05-25 15:28:05] 2025-05-25 19:27:50,884 | INFO     | chi2: 0.0015444983991160905
[2025-05-25 15:28:05] 2025-05-25 19:27:50,884 | INFO     | -- intersect: -2136703550.7988794
[2025-05-25 15:28:05] 2025-05-25 19:27:50,884 | INFO     | current memory leak: 1.22 B/s (using 443 data points, chi2=0.00)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | ..............................
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . Timing measurements:
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . get job = 0 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . initial setup = 4 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . payload setup = 47 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . stage-in = 0 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,885 | INFO     | . payload execution = 28606 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,886 | INFO     | . stage-out = 2 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,886 | INFO     | . log creation = 0 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,886 | INFO     | ..............................
[2025-05-25 15:28:05] 2025-05-25 19:27:50,941 | INFO     | 
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | job summary report
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | --------------------------------------------------
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | PanDA job id: 6665684181
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | task id: 44871837
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | errors: (none)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | pilot state: finished 
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | transexitcode: 0
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | exeerrorcode: 0
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | exeerrordiag: 
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | exitcode: 0
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | exitmsg: OK
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | cpuconsumptiontime: 63949 s
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | nevents: 400
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | neventsw: 0
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | pid: 77121
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | pgrp: 77121
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | corecount: 8
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | event service: False
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | sizes: {0: 2393567, 1: 2393766, 2: 2393766, 13: 2393794, 23: 2393850, 28: 2394084, 35: 2394240, 28657: 2430564, 28660: 2439505, 28664: 2439561, 28669: 2439731}
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | --------------------------------------------------
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | 
[2025-05-25 15:28:05] 2025-05-25 19:27:50,942 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-25 15:28:05] 2025-05-25 19:27:50,983 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,983 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 15:28:05] 2025-05-25 19:27:50,984 | INFO     | job 6665684181 has completed (purged errors)
[2025-05-25 15:28:05] 2025-05-25 19:27:50,985 | INFO     | overall cleanup function is called
[2025-05-25 15:28:05] 2025-05-25 19:27:51,991 | INFO     | --- collectZombieJob: --- 10, [77121]
[2025-05-25 15:28:05] 2025-05-25 19:27:51,991 | INFO     | zombie collector waiting for pid 77121
[2025-05-25 15:28:05] 2025-05-25 19:27:51,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 15:28:05] 2025-05-25 19:27:51,992 | INFO     | collected zombie processes
[2025-05-25 15:28:05] 2025-05-25 19:27:51,992 | INFO     | will attempt to kill all subprocesses of pid=77121
[2025-05-25 15:28:05] 2025-05-25 19:27:52,246 | INFO     | process IDs to be killed: [77121] (in reverse order)
[2025-05-25 15:28:05] 2025-05-25 19:27:52,364 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 15:28:05] 2025-05-25 19:27:52,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 15:28:05] 2025-05-25 19:27:52,375 | INFO     | did not find any defunct processes belonging to 77121
[2025-05-25 15:28:05] 2025-05-25 19:27:52,384 | INFO     | did not find any defunct processes belonging to 77121
[2025-05-25 15:28:05] 2025-05-25 19:27:52,385 | INFO     | ready for new job
[2025-05-25 15:28:05] 2025-05-25 19:27:52,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 15:28:05] 2025-05-25 19:27:52,387 | INFO     | **************************************
[2025-05-25 15:28:05] 2025-05-25 19:27:52,387 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 15:28:05] 2025-05-25 19:27:52,387 | INFO     | **************************************
[2025-05-25 15:28:05] 2025-05-25 19:27:52,387 | INFO     | 
[2025-05-25 15:28:05] 2025-05-25 19:27:52,392 | INFO     | architecture information:
[2025-05-25 15:28:05] 2025-05-25 19:27:52,393 | INFO     | executing command: cat /etc/os-release
[2025-05-25 15:28:05] 2025-05-25 19:27:52,412 | INFO     | cat /etc/os-release:
[2025-05-25 15:28:05] NAME="CentOS Linux"
[2025-05-25 15:28:05] VERSION="7 (Core)"
[2025-05-25 15:28:05] ID="centos"
[2025-05-25 15:28:05] ID_LIKE="rhel fedora"
[2025-05-25 15:28:05] VERSION_ID="7"
[2025-05-25 15:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 15:28:05] ANSI_COLOR="0;31"
[2025-05-25 15:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 15:28:05] HOME_URL="https://www.centos.org/"
[2025-05-25 15:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 15:28:05] 
[2025-05-25 15:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 15:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 15:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 15:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 15:28:05] 
[2025-05-25 15:28:05] 2025-05-25 19:27:52,412 | INFO     | **************************************
[2025-05-25 15:28:05] 2025-05-25 19:27:52,915 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | INFO     | sufficient remaining disk space (103407419392 B)
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | INFO     | update_server=False
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 15:28:05] 2025-05-25 19:27:52,974 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 15:28:05] 2025-05-25 19:27:52,975 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 15:28:05] 2025-05-25 19:27:52,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 15:28:05] 2025-05-25 19:27:52,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 15:28:05] 2025-05-25 19:27:52,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 15:28:05] 2025-05-25 19:27:53,074 | INFO     | all data control threads have been joined
[2025-05-25 15:28:05] 2025-05-25 19:27:53,200 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 15:28:05] 2025-05-25 19:27:53,201 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 15:28:05] 2025-05-25 19:27:53,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 15:28:05] 2025-05-25 19:27:53,201 | INFO     | will abort loop
[2025-05-25 15:28:05] 2025-05-25 19:27:53,322 | INFO     | all payload control threads have been joined
[2025-05-25 15:28:05] 2025-05-25 19:27:53,979 | INFO     | [job] retrieve thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,079 | INFO     | [data] control thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,207 | INFO     | [job] job monitor thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,224 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,327 | INFO     | [payload] control thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,531 | INFO     | all job control threads have been joined
[2025-05-25 15:28:05] 2025-05-25 19:27:54,602 | INFO     | [payload] failed_post thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,693 | INFO     | [data] copytool_in thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,714 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,774 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,780 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:54,976 | INFO     | [data] copytool_out thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:55,011 | INFO     | [job] validate thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:55,336 | INFO     | [payload] validate_post thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:55,537 | INFO     | [job] control thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:55,753 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 15:28:05] 2025-05-25 19:27:55,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 15:28:05] 2025-05-25 19:27:56,955 | INFO     | [job] queue monitor thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:59,758 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 15:28:05] 2025-05-25 19:27:59,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613614126912)>', '<ExcThread(monitor, started 140613169166080)>']
[2025-05-25 15:28:05] 2025-05-25 19:28:00,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 15:28:05] 2025-05-25 19:28:00,000 | INFO     | [monitor] control thread has ended
[2025-05-25 15:28:05] 2025-05-25 19:28:04,805 | INFO     | all workflow threads have been joined
[2025-05-25 15:28:05] 2025-05-25 19:28:04,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 15:28:05] 2025-05-25 19:28:04,805 | INFO     | traces error code: 0
[2025-05-25 15:28:05] 2025-05-25 19:28:04,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 15:28:05] 2025-05-25 19:28:05,030 [wrapper] ==== pilot stdout END ====
[2025-05-25 15:28:05] 2025-05-25 19:28:05,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 15:28:05] 2025-05-25 19:28:05,037 [wrapper] pilotpid: 37638
[2025-05-25 15:28:05] 2025-05-25 19:28:05,040 [wrapper] Pilot exit status: 0
[2025-05-25 15:28:05] 2025-05-25 19:28:05,053 [wrapper] pandaids: 6665684181 6665684181
[2025-05-25 15:28:05] 2025-05-25 19:28:05,118 [wrapper] cleanup supervisor_pilot 302292 37639
[2025-05-25 15:28:05] 2025-05-25 19:28:05,122 [wrapper] Test setup, not cleaning
[2025-05-25 15:28:05] 2025-05-25 19:28:05,125 [wrapper] apfmon messages muted
[2025-05-25 15:28:05] 2025-05-25 19:28:05,128 [wrapper] ==== wrapper stdout END ====
[2025-05-25 15:28:05] 2025-05-25 19:28:05,131 [wrapper] ==== wrapper stderr END ====
[2025-05-25 15:28:05]  *** Error codes and diagnostics ***
[2025-05-25 15:28:05]     "exeErrorCode": 0,
[2025-05-25 15:28:05]     "exeErrorDiag": "",
[2025-05-25 15:28:05]     "pilotErrorCode": 0,
[2025-05-25 15:28:05]     "pilotErrorDiag": "",
[2025-05-25 15:28:05]  *** Listing of results directory ***
[2025-05-25 15:28:05] total 645144
[2025-05-25 15:28:05] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas    495897 May 24 20:12 pilot3.tar.gz
[2025-05-25 15:28:05] -rwx------ 1 boincer umatlas     37140 May 24 20:21 runpilot2-wrapper.sh
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas      5111 May 24 20:21 queuedata.json
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas       100 May 25 02:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 15:28:05] -rwxr-xr-x 1 boincer umatlas      7986 May 25 02:33 run_atlas
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas       105 May 25 02:33 job.xml
[2025-05-25 15:28:05] -rw-r--r-- 3 boincer umatlas 223782684 May 25 02:33 EVNT.44871834._001053.pool.root.1
[2025-05-25 15:28:05] -rw-r--r-- 3 boincer umatlas 223782684 May 25 02:33 ATLAS.root_0
[2025-05-25 15:28:05] -rw-r--r-- 2 boincer umatlas     15093 May 25 02:33 start_atlas.sh
[2025-05-25 15:28:05] drwxrwx--x 2 boincer umatlas      4096 May 25 02:33 shared
[2025-05-25 15:28:05] -rw-r--r-- 2 boincer umatlas    508871 May 25 02:33 input.tar.gz
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas         0 May 25 02:33 boinc_lockfile
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas      2557 May 25 07:28 pandaJob.out
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas    990811 May 25 07:28 agis_schedconf.cvmfs.json
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas      6300 May 25 15:21 init_data.xml
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas 203675238 May 25 15:26 HITS.44871837._026402.pool.root.1
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas       532 May 25 15:27 boinc_task_state.xml
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas      1065 May 25 15:27 memory_monitor_summary.json
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas   1596740 May 25 15:27 agis_ddmendpoints.agis.ALL.json
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas    501323 May 25 15:27 log.44871837._026402.job.log.tgz.1
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas        96 May 25 15:27 pilot_heartbeat.json
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas      7763 May 25 15:27 heartbeat.json
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas      8192 May 25 15:27 boinc_mmap_file
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas        29 May 25 15:27 wrapper_checkpoint.txt
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas      4663 May 25 15:28 pilotlog.txt
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas   2276207 May 25 15:28 log.44871837._026402.job.log.1
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas       357 May 25 15:28 output.list
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas       620 May 25 15:28 runtime_log
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas   2795520 May 25 15:28 result.tar.gz
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas      8755 May 25 15:28 runtime_log.err
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas       789 May 25 15:28 7cdKDmkIEd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQySKDmJEpHUm.diag
[2025-05-25 15:28:05] -rw-r--r-- 1 boincer umatlas     23544 May 25 15:28 stderr.txt
[2025-05-25 15:28:05] HITS file was successfully produced:
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas 203675238 May 25 15:26 shared/HITS.pool.root.1
[2025-05-25 15:28:05]  *** Contents of shared directory: ***
[2025-05-25 15:28:05] total 420696
[2025-05-25 15:28:05] -rw-r--r-- 3 boincer umatlas 223782684 May 25 02:33 ATLAS.root_0
[2025-05-25 15:28:05] -rw-r--r-- 2 boincer umatlas     15093 May 25 02:33 start_atlas.sh
[2025-05-25 15:28:05] -rw-r--r-- 2 boincer umatlas    508871 May 25 02:33 input.tar.gz
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas 203675238 May 25 15:26 HITS.pool.root.1
[2025-05-25 15:28:05] -rw------- 1 boincer umatlas   2795520 May 25 15:28 result.tar.gz
15:28:07 (14567): run_atlas exited; CPU time 64965.541223
15:28:07 (14567): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN