Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:24:34 (141739): wrapper (7.7.26015): starting
02:24:34 (141739): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 02:24:34] Arguments: --nthreads 8
[2025-05-25 02:24:34] Threads: 8
[2025-05-25 02:24:34] Checking for CVMFS
[2025-05-25 02:24:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 02:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 02:24:36] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 02:24:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 02:24:37] 2.11.2.0 7082 14019 140880 146393 2 133 17163462 18432000 20739 130560 0 50625692 99.338 67952170 34711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 02:24:37] CVMFS is ok
[2025-05-25 02:24:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 02:24:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 02:24:37] Further information can be found at the LHC@home message board.
[2025-05-25 02:24:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 02:24:37] Checking for apptainer binary...
[2025-05-25 02:24:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 02:24:37] Running /usr/bin/apptainer --version
[2025-05-25 02:24:37] apptainer version 1.3.2-1.el7
[2025-05-25 02:24:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 02:25:03] c-211-35-3.aglt2.org
[2025-05-25 02:25:03] apptainer works
[2025-05-25 02:25:03] Set ATHENA_PROC_NUMBER=8
[2025-05-25 02:25:03] Set ATHENA_CORE_NUMBER=8
[2025-05-25 02:25:04] Starting ATLAS job with PandaID=6665679398
[2025-05-25 02:25:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:07 (141739): BOINC client no longer exists - exiting
07:20:07 (141739): timer handler: client dead, exiting
07:27:54 (14564): wrapper (7.7.26015): starting
07:27:54 (14564): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 07:27:54] Arguments: --nthreads 8
[2025-05-25 07:27:54] Threads: 8
[2025-05-25 07:27:54] This job has been restarted, cleaning up previous attempt
[2025-05-25 07:27:54] Checking for CVMFS
[2025-05-25 07:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 07:27:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 07:27:55] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 07:27:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 07:27:56] 2.11.2.0 7082 14322 142220 146401 3 331 18425427 18432001 19142 130560 0 51793627 99.351 68420435 34001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 07:27:56] CVMFS is ok
[2025-05-25 07:27:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 07:27:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 07:27:56] Further information can be found at the LHC@home message board.
[2025-05-25 07:27:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 07:27:56] Checking for apptainer binary...
[2025-05-25 07:27:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 07:27:56] Running /usr/bin/apptainer --version
[2025-05-25 07:27:57] apptainer version 1.3.2-1.el7
[2025-05-25 07:27:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 07:28:04] c-211-35-3.aglt2.org
[2025-05-25 07:28:04] apptainer works
[2025-05-25 07:28:04] Set ATHENA_PROC_NUMBER=8
[2025-05-25 07:28:04] Set ATHENA_CORE_NUMBER=8
[2025-05-25 07:28:04] Starting ATLAS job with PandaID=6665679398
[2025-05-25 07:28:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 15:21:11]  *** The last 200 lines of the pilot log: ***
[2025-05-25 15:21:11] 2025-05-25 19:20:54,496 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 15:21:11] 2025-05-25 19:20:54,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 15:21:11] 2025-05-25 19:20:54,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 15:21:11] 2025-05-25 19:20:54,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 15:21:11] 2025-05-25 19:20:54,501 | INFO     | fitting pss+swap vs Time
[2025-05-25 15:21:11] 2025-05-25 19:20:54,501 | INFO     | sum of square deviations: 30379236243.483883
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | sum of deviations: 207564045129.43167
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | mean x: 1748186728.3036876
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | mean y: 2454731.2754880693
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | -- intersect: -11941911021.044273
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | intersect: -11941911021.044273
[2025-05-25 15:21:11] 2025-05-25 19:20:54,505 | INFO     | chi2: 4.617465817862988
[2025-05-25 15:21:11] 2025-05-25 19:20:54,506 | INFO     | sum of square deviations: 29401474563.01754
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | sum of deviations: 235308684753.0877
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | mean x: 1748186575.8070176
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | mean y: 2459016.410087719
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | -- intersect: -13988794482.609459
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | intersect: -13988794482.609459
[2025-05-25 15:21:11] 2025-05-25 19:20:54,509 | INFO     | chi2: 3.851551410958224
[2025-05-25 15:21:11] 2025-05-25 19:20:54,510 | INFO     | current chi2=3.851551410958224 (change=16.587332470156486 %)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,510 | INFO     | right removable region: 455
[2025-05-25 15:21:11] 2025-05-25 19:20:54,510 | INFO     | sum of square deviations: 29401389163.01751
[2025-05-25 15:21:11] 2025-05-25 19:20:54,513 | INFO     | sum of deviations: 67760044241.42102
[2025-05-25 15:21:11] 2025-05-25 19:20:54,513 | INFO     | mean x: 1748186880.8070176
[2025-05-25 15:21:11] 2025-05-25 19:20:54,513 | INFO     | mean y: 2476510.2434210526
[2025-05-25 15:21:11] 2025-05-25 19:20:54,513 | INFO     | -- intersect: -4026490275.27012
[2025-05-25 15:21:11] 2025-05-25 19:20:54,513 | INFO     | intersect: -4026490275.27012
[2025-05-25 15:21:11] 2025-05-25 19:20:54,514 | INFO     | chi2: 1.143790296890821
[2025-05-25 15:21:11] 2025-05-25 19:20:54,514 | INFO     | current chi2=1.143790296890821 (change=75.22904679735824 %)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,514 | INFO     | sum of square deviations: 28444751782.541046
[2025-05-25 15:21:11] 2025-05-25 19:20:54,517 | INFO     | sum of deviations: 26247560561.73612
[2025-05-25 15:21:11] 2025-05-25 19:20:54,517 | INFO     | mean x: 1748187033.3104212
[2025-05-25 15:21:11] 2025-05-25 19:20:54,517 | INFO     | mean y: 2483118.6518847006
[2025-05-25 15:21:11] 2025-05-25 19:20:54,517 | INFO     | -- intersect: -1610666659.586679
[2025-05-25 15:21:11] 2025-05-25 19:20:54,517 | INFO     | intersect: -1610666659.586679
[2025-05-25 15:21:11] 2025-05-25 19:20:54,518 | INFO     | chi2: 0.8551130695573327
[2025-05-25 15:21:11] 2025-05-25 19:20:54,518 | INFO     | current chi2=0.8551130695573327 (change=25.238649787308308 %)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,518 | INFO     | sum of square deviations: 27509091539.553696
[2025-05-25 15:21:11] 2025-05-25 19:20:54,521 | INFO     | sum of deviations: 7320563100.726456
[2025-05-25 15:21:11] 2025-05-25 19:20:54,521 | INFO     | mean x: 1748187185.8139014
[2025-05-25 15:21:11] 2025-05-25 19:20:54,521 | INFO     | mean y: 2486198.2376681613
[2025-05-25 15:21:11] 2025-05-25 19:20:54,521 | INFO     | -- intersect: -462731440.3466884
[2025-05-25 15:21:11] 2025-05-25 19:20:54,521 | INFO     | intersect: -462731440.3466884
[2025-05-25 15:21:11] 2025-05-25 19:20:54,522 | INFO     | chi2: 0.7903964887119923
[2025-05-25 15:21:11] 2025-05-25 19:20:54,522 | INFO     | current chi2=0.7903964887119923 (change=7.568189886144797 %)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,522 | INFO     | left removable region: 30
[2025-05-25 15:21:11] 2025-05-25 19:20:54,522 | INFO     | sum of square deviations: 23803593849.049435
[2025-05-25 15:21:11] 2025-05-25 19:20:54,525 | INFO     | sum of deviations: 32475072271.771774
[2025-05-25 15:21:11] 2025-05-25 19:20:54,525 | INFO     | mean x: 1748187460.2988236
[2025-05-25 15:21:11] 2025-05-25 19:20:54,525 | INFO     | mean y: 2491567.143529412
[2025-05-25 15:21:11] 2025-05-25 19:20:54,525 | INFO     | -- intersect: -2382548039.8096275
[2025-05-25 15:21:11] 2025-05-25 19:20:54,525 | INFO     | intersect: -2382548039.8096275
[2025-05-25 15:21:11] 2025-05-25 19:20:54,526 | INFO     | chi2: 0.001844001342293492
[2025-05-25 15:21:11] 2025-05-25 19:20:54,526 | INFO     | -- intersect: -2382548039.8096275
[2025-05-25 15:21:11] 2025-05-25 19:20:54,526 | INFO     | current memory leak: 1.36 B/s (using 425 data points, chi2=0.00)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,526 | INFO     | ..............................
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . Timing measurements:
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . get job = 0 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . initial setup = 6 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . payload setup = 47 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . stage-in = 0 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . payload execution = 28152 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . stage-out = 4 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | . log creation = 0 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,527 | INFO     | ..............................
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | 
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | job summary report
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | --------------------------------------------------
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | PanDA job id: 6665679398
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | task id: 44871837
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | errors: (none)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | pilot state: finished 
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | transexitcode: 0
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | exeerrorcode: 0
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | exeerrordiag: 
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | exitcode: 0
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | exitmsg: OK
[2025-05-25 15:21:11] 2025-05-25 19:20:54,601 | INFO     | cpuconsumptiontime: 61183 s
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | nevents: 400
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | neventsw: 0
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | pid: 77373
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | pgrp: 77373
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | corecount: 8
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | event service: False
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | sizes: {0: 2393512, 1: 2393596, 2: 2393767, 12: 2393795, 23: 2393823, 26: 2394057, 34: 2394213, 28204: 2430363, 28210: 2439304, 28212: 2439360, 28252: 2439530}
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | --------------------------------------------------
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | 
[2025-05-25 15:21:11] 2025-05-25 19:20:54,602 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-05-25 15:21:11] 2025-05-25 19:20:54,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,833 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | job 6665679398 has completed (purged errors)
[2025-05-25 15:21:11] 2025-05-25 19:20:54,834 | INFO     | overall cleanup function is called
[2025-05-25 15:21:11] 2025-05-25 19:20:55,842 | INFO     | --- collectZombieJob: --- 10, [77373]
[2025-05-25 15:21:11] 2025-05-25 19:20:55,842 | INFO     | zombie collector waiting for pid 77373
[2025-05-25 15:21:11] 2025-05-25 19:20:55,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 15:21:11] 2025-05-25 19:20:55,846 | INFO     | collected zombie processes
[2025-05-25 15:21:11] 2025-05-25 19:20:55,846 | INFO     | will attempt to kill all subprocesses of pid=77373
[2025-05-25 15:21:11] 2025-05-25 19:20:56,501 | INFO     | process IDs to be killed: [77373] (in reverse order)
[2025-05-25 15:21:11] 2025-05-25 19:20:56,918 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 15:21:11] 2025-05-25 19:20:56,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 15:21:11] 2025-05-25 19:20:56,957 | INFO     | did not find any defunct processes belonging to 77373
[2025-05-25 15:21:11] 2025-05-25 19:20:56,999 | INFO     | did not find any defunct processes belonging to 77373
[2025-05-25 15:21:11] 2025-05-25 19:20:56,999 | INFO     | ready for new job
[2025-05-25 15:21:11] 2025-05-25 19:20:57,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 15:21:11] 2025-05-25 19:20:57,007 | INFO     | **************************************
[2025-05-25 15:21:11] 2025-05-25 19:20:57,007 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 15:21:11] 2025-05-25 19:20:57,007 | INFO     | **************************************
[2025-05-25 15:21:11] 2025-05-25 19:20:57,007 | INFO     | 
[2025-05-25 15:21:11] 2025-05-25 19:20:57,031 | INFO     | architecture information:
[2025-05-25 15:21:11] 2025-05-25 19:20:57,044 | INFO     | executing command: cat /etc/os-release
[2025-05-25 15:21:11] 2025-05-25 19:20:57,184 | INFO     | cat /etc/os-release:
[2025-05-25 15:21:11] NAME="CentOS Linux"
[2025-05-25 15:21:11] VERSION="7 (Core)"
[2025-05-25 15:21:11] ID="centos"
[2025-05-25 15:21:11] ID_LIKE="rhel fedora"
[2025-05-25 15:21:11] VERSION_ID="7"
[2025-05-25 15:21:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 15:21:11] ANSI_COLOR="0;31"
[2025-05-25 15:21:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 15:21:11] HOME_URL="https://www.centos.org/"
[2025-05-25 15:21:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 15:21:11] 
[2025-05-25 15:21:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 15:21:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 15:21:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 15:21:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 15:21:11] 
[2025-05-25 15:21:11] 2025-05-25 19:20:57,184 | INFO     | **************************************
[2025-05-25 15:21:11] 2025-05-25 19:20:57,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-05-25 15:21:11] 2025-05-25 19:20:57,857 | INFO     | sufficient remaining disk space (103295221760 B)
[2025-05-25 15:21:11] 2025-05-25 19:20:57,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 15:21:11] 2025-05-25 19:20:57,858 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 15:21:11] 2025-05-25 19:20:57,858 | INFO     | update_server=False
[2025-05-25 15:21:11] 2025-05-25 19:20:57,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 15:21:11] 2025-05-25 19:20:57,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 15:21:11] 2025-05-25 19:20:57,859 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 15:21:11] 2025-05-25 19:20:57,859 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 15:21:11] 2025-05-25 19:20:57,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 15:21:11] 2025-05-25 19:20:57,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 15:21:11] 2025-05-25 19:20:57,882 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 15:21:11] 2025-05-25 19:20:57,882 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 15:21:11] 2025-05-25 19:20:57,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 15:21:11] 2025-05-25 19:20:57,882 | INFO     | will abort loop
[2025-05-25 15:21:11] 2025-05-25 19:20:58,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 15:21:11] 2025-05-25 19:20:58,600 | INFO     | all payload control threads have been joined
[2025-05-25 15:21:11] 2025-05-25 19:20:58,644 | INFO     | all job control threads have been joined
[2025-05-25 15:21:11] 2025-05-25 19:20:58,864 | INFO     | [job] retrieve thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:58,870 | INFO     | [payload] failed_post thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:58,879 | INFO     | all data control threads have been joined
[2025-05-25 15:21:11] 2025-05-25 19:20:58,888 | INFO     | [job] job monitor thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,017 | INFO     | [data] copytool_in thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,393 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,401 | INFO     | [job] validate thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,606 | INFO     | [payload] control thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 15:21:11] 2025-05-25 19:20:59,644 | INFO     | [job] control thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,726 | INFO     | [payload] validate_post thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,726 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:20:59,885 | INFO     | [data] control thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:21:00,083 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:21:00,109 | INFO     | [data] copytool_out thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:21:00,621 | INFO     | [job] queue monitor thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:21:01,868 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 15:21:11] 2025-05-25 19:21:03,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695637468992)>', '<ExcThread(monitor, started 139695178622720)>']
[2025-05-25 15:21:11] 2025-05-25 19:21:03,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 15:21:11] 2025-05-25 19:21:03,893 | INFO     | [monitor] control thread has ended
[2025-05-25 15:21:11] 2025-05-25 19:21:08,685 | INFO     | all workflow threads have been joined
[2025-05-25 15:21:11] 2025-05-25 19:21:08,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 15:21:11] 2025-05-25 19:21:08,685 | INFO     | traces error code: 0
[2025-05-25 15:21:11] 2025-05-25 19:21:08,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 15:21:11] 2025-05-25 19:21:09,386 [wrapper] ==== pilot stdout END ====
[2025-05-25 15:21:11] 2025-05-25 19:21:09,452 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 15:21:11] 2025-05-25 19:21:09,506 [wrapper] pilotpid: 37771
[2025-05-25 15:21:11] 2025-05-25 19:21:09,543 [wrapper] Pilot exit status: 0
[2025-05-25 15:21:11] 2025-05-25 19:21:09,710 [wrapper] pandaids: 6665679398 6665679398
[2025-05-25 15:21:11] 2025-05-25 19:21:10,172 [wrapper] cleanup supervisor_pilot 302327 37772
[2025-05-25 15:21:11] 2025-05-25 19:21:10,220 [wrapper] Test setup, not cleaning
[2025-05-25 15:21:11] 2025-05-25 19:21:10,266 [wrapper] apfmon messages muted
[2025-05-25 15:21:11] 2025-05-25 19:21:10,305 [wrapper] ==== wrapper stdout END ====
[2025-05-25 15:21:11] 2025-05-25 19:21:10,338 [wrapper] ==== wrapper stderr END ====
[2025-05-25 15:21:11]  *** Error codes and diagnostics ***
[2025-05-25 15:21:11]     "exeErrorCode": 0,
[2025-05-25 15:21:11]     "exeErrorDiag": "",
[2025-05-25 15:21:11]     "pilotErrorCode": 0,
[2025-05-25 15:21:11]     "pilotErrorDiag": "",
[2025-05-25 15:21:11]  *** Listing of results directory ***
[2025-05-25 15:21:11] total 638516
[2025-05-25 15:21:11] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas    495897 May 24 15:53 pilot3.tar.gz
[2025-05-25 15:21:11] -rwx------ 1 boincer umatlas     37140 May 24 16:32 runpilot2-wrapper.sh
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas      5111 May 24 16:32 queuedata.json
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas       100 May 25 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 15:21:11] -rwxr-xr-x 1 boincer umatlas      7986 May 25 02:24 run_atlas
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas       105 May 25 02:24 job.xml
[2025-05-25 15:21:11] -rw-r--r-- 3 boincer umatlas 225545994 May 25 02:24 EVNT.44871834._000941.pool.root.1
[2025-05-25 15:21:11] -rw-r--r-- 3 boincer umatlas 225545994 May 25 02:24 ATLAS.root_0
[2025-05-25 15:21:11] -rw-r--r-- 2 boincer umatlas     15093 May 25 02:24 start_atlas.sh
[2025-05-25 15:21:11] drwxrwx--x 2 boincer umatlas      4096 May 25 02:24 shared
[2025-05-25 15:21:11] -rw-r--r-- 2 boincer umatlas    508873 May 25 02:24 input.tar.gz
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas         0 May 25 02:24 boinc_lockfile
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas      2558 May 25 07:28 pandaJob.out
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas    990811 May 25 07:28 agis_schedconf.cvmfs.json
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas      6300 May 25 15:09 init_data.xml
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas 193443173 May 25 15:18 HITS.44871837._023610.pool.root.1
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas       532 May 25 15:18 boinc_task_state.xml
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas      1063 May 25 15:20 memory_monitor_summary.json
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas   1596740 May 25 15:20 agis_ddmendpoints.agis.ALL.json
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas        96 May 25 15:20 pilot_heartbeat.json
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas    509449 May 25 15:20 log.44871837._023610.job.log.tgz.1
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas      7757 May 25 15:20 heartbeat.json
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas      4663 May 25 15:21 pilotlog.txt
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas      8192 May 25 15:21 boinc_mmap_file
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas   2230272 May 25 15:21 log.44871837._023610.job.log.1
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas        29 May 25 15:21 wrapper_checkpoint.txt
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas       357 May 25 15:21 output.list
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas       620 May 25 15:21 runtime_log
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas   2754560 May 25 15:21 result.tar.gz
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas      8755 May 25 15:21 runtime_log.err
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas       789 May 25 15:21 3tuLDmDjAd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMJNKDmlufr4n.diag
[2025-05-25 15:21:11] -rw-r--r-- 1 boincer umatlas     23214 May 25 15:21 stderr.txt
[2025-05-25 15:21:11] HITS file was successfully produced:
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas 193443173 May 25 15:18 shared/HITS.pool.root.1
[2025-05-25 15:21:11]  *** Contents of shared directory: ***
[2025-05-25 15:21:11] total 412384
[2025-05-25 15:21:11] -rw-r--r-- 3 boincer umatlas 225545994 May 25 02:24 ATLAS.root_0
[2025-05-25 15:21:11] -rw-r--r-- 2 boincer umatlas     15093 May 25 02:24 start_atlas.sh
[2025-05-25 15:21:11] -rw-r--r-- 2 boincer umatlas    508873 May 25 02:24 input.tar.gz
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas 193443173 May 25 15:18 HITS.pool.root.1
[2025-05-25 15:21:11] -rw------- 1 boincer umatlas   2754560 May 25 15:21 result.tar.gz
15:21:12 (14564): run_atlas exited; CPU time 62192.355114
15:21:12 (14564): called boinc_finish(0)

</stderr_txt>
]]>

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