Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:57:05 (50677): wrapper (7.7.26015): starting
23:57:05 (50677): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 23:57:05] Arguments: --nthreads 8
[2025-05-24 23:57:05] Threads: 8
[2025-05-24 23:57:05] Checking for CVMFS
[2025-05-24 23:57:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 23:57:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 23:57:05] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 23:57:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 23:57:05] 2.11.2.0 5200 13871 215840 146389 0 510 17485369 18432001 18432 130560 0 69539065 99.437 79414873 48648 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 23:57:05] CVMFS is ok
[2025-05-24 23:57:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 23:57:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 23:57:05] Further information can be found at the LHC@home message board.
[2025-05-24 23:57:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 23:57:05] Checking for apptainer binary...
[2025-05-24 23:57:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 23:57:05] Running /usr/bin/apptainer --version
[2025-05-24 23:57:05] apptainer version 1.3.2-1.el7
[2025-05-24 23:57:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 23:57:07] c-212-5.aglt2.org
[2025-05-24 23:57:07] apptainer works
[2025-05-24 23:57:07] Set ATHENA_PROC_NUMBER=8
[2025-05-24 23:57:07] Set ATHENA_CORE_NUMBER=8
[2025-05-24 23:57:07] Starting ATLAS job with PandaID=6665681059
[2025-05-24 23:57:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 05:14:44]  *** The last 200 lines of the pilot log: ***
[2025-05-25 05:14:44] 2025-05-25 09:14:28,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 05:14:44] 2025-05-25 09:14:28,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 05:14:44] 2025-05-25 09:14:28,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 05:14:44] 2025-05-25 09:14:28,932 | INFO     | fitting pss+swap vs Time
[2025-05-25 05:14:44] 2025-05-25 09:14:28,932 | INFO     | sum of square deviations: 9237675253.987125
[2025-05-25 05:14:44] 2025-05-25 09:14:28,934 | INFO     | sum of deviations: 70465611152.18709
[2025-05-25 05:14:44] 2025-05-25 09:14:28,934 | INFO     | mean x: 1748154915.6064515
[2025-05-25 05:14:44] 2025-05-25 09:14:28,935 | INFO     | mean y: 2473380.706451613
[2025-05-25 05:14:44] 2025-05-25 09:14:28,935 | INFO     | -- intersect: -13332570462.033112
[2025-05-25 05:14:44] 2025-05-25 09:14:28,935 | INFO     | intersect: -13332570462.033112
[2025-05-25 05:14:44] 2025-05-25 09:14:28,935 | INFO     | chi2: 1.6130971062609285
[2025-05-25 05:14:44] 2025-05-25 09:14:28,935 | INFO     | sum of square deviations: 8797853754.642681
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | sum of deviations: 69196025733.49179
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | mean x: 1748154763.104918
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | mean y: 2472940.6721311477
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | -- intersect: -13746944286.239603
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | intersect: -13746944286.239603
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | chi2: 1.613193534629305
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | current chi2=1.613193534629305 (change=-0.005977840267777675 %)
[2025-05-25 05:14:44] 2025-05-25 09:14:28,938 | INFO     | right removable region: 304
[2025-05-25 05:14:44] 2025-05-25 09:14:28,939 | INFO     | sum of square deviations: 8797852291.42946
[2025-05-25 05:14:44] 2025-05-25 09:14:28,941 | INFO     | sum of deviations: 16885868762.285238
[2025-05-25 05:14:44] 2025-05-25 09:14:28,941 | INFO     | mean x: 1748155068.1081967
[2025-05-25 05:14:44] 2025-05-25 09:14:28,941 | INFO     | mean y: 2491845.4459016393
[2025-05-25 05:14:44] 2025-05-25 09:14:28,941 | INFO     | -- intersect: -3352772152.900063
[2025-05-25 05:14:44] 2025-05-25 09:14:28,941 | INFO     | intersect: -3352772152.900063
[2025-05-25 05:14:44] 2025-05-25 09:14:28,942 | INFO     | chi2: 0.019767862490340467
[2025-05-25 05:14:44] 2025-05-25 09:14:28,942 | INFO     | current chi2=0.019767862490340467 (change=98.77453983311882 %)
[2025-05-25 05:14:44] 2025-05-25 09:14:28,942 | INFO     | sum of square deviations: 8372215641.369983
[2025-05-25 05:14:44] 2025-05-25 09:14:28,944 | INFO     | sum of deviations: 12219166215.749998
[2025-05-25 05:14:44] 2025-05-25 09:14:28,944 | INFO     | mean x: 1748155220.61
[2025-05-25 05:14:44] 2025-05-25 09:14:28,944 | INFO     | mean y: 2493503.4166666665
[2025-05-25 05:14:44] 2025-05-25 09:14:28,944 | INFO     | -- intersect: -2548921812.0241694
[2025-05-25 05:14:44] 2025-05-25 09:14:28,944 | INFO     | intersect: -2548921812.0241694
[2025-05-25 05:14:44] 2025-05-25 09:14:28,945 | INFO     | chi2: 0.002516295097554866
[2025-05-25 05:14:44] 2025-05-25 09:14:28,945 | INFO     | current chi2=0.002516295097554866 (change=87.27077801768174 %)
[2025-05-25 05:14:44] 2025-05-25 09:14:28,945 | INFO     | sum of square deviations: 7960532741.308458
[2025-05-25 05:14:44] 2025-05-25 09:14:28,947 | INFO     | sum of deviations: 11612787826.830503
[2025-05-25 05:14:44] 2025-05-25 09:14:28,947 | INFO     | mean x: 1748155373.1118643
[2025-05-25 05:14:44] 2025-05-25 09:14:28,947 | INFO     | mean y: 2493726.7627118644
[2025-05-25 05:14:44] 2025-05-25 09:14:28,947 | INFO     | -- intersect: -2547707132.400511
[2025-05-25 05:14:44] 2025-05-25 09:14:28,947 | INFO     | intersect: -2547707132.400511
[2025-05-25 05:14:44] 2025-05-25 09:14:28,948 | INFO     | chi2: 0.0024599094861512166
[2025-05-25 05:14:44] 2025-05-25 09:14:28,948 | INFO     | current chi2=0.0024599094861512166 (change=2.2408187123378513 %)
[2025-05-25 05:14:44] 2025-05-25 09:14:28,948 | INFO     | left removable region: 30
[2025-05-25 05:14:44] 2025-05-25 09:14:28,948 | INFO     | sum of square deviations: 6378666125.638726
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | sum of deviations: 8383611109.861313
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | mean x: 1748155647.6021898
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | mean y: 2494812.897810219
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | -- intersect: -2295141843.470837
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | intersect: -2295141843.470837
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | chi2: 0.0012288679897420826
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | -- intersect: -2295141843.470837
[2025-05-25 05:14:44] 2025-05-25 09:14:28,950 | INFO     | current memory leak: 1.31 B/s (using 274 data points, chi2=0.00)
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | ..............................
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . Timing measurements:
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . get job = 0 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . initial setup = 2 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . payload setup = 12 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . stage-in = 0 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,951 | INFO     | . payload execution = 18925 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,952 | INFO     | . stage-out = 3 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,952 | INFO     | . log creation = 1 s
[2025-05-25 05:14:44] 2025-05-25 09:14:28,952 | INFO     | ..............................
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | 
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | job summary report
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | --------------------------------------------------
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | PanDA job id: 6665681059
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | task id: 44871837
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | errors: (none)
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | pilot state: finished 
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | transexitcode: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | exeerrorcode: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:29,032 | INFO     | exeerrordiag: 
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | exitcode: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | exitmsg: OK
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | cpuconsumptiontime: 46184 s
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | nevents: 400
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | neventsw: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | pid: 79066
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | pgrp: 79066
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | corecount: 8
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | event service: False
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | sizes: {0: 2393739, 6: 2393945, 11: 2393973, 18942: 2426932, 18947: 2435873, 18950: 2435929, 19006: 2436227}
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | --------------------------------------------------
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | 
[2025-05-25 05:14:44] 2025-05-25 09:14:29,033 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-05-25 05:14:44] 2025-05-25 09:14:29,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,048 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 05:14:44] 2025-05-25 09:14:29,049 | INFO     | job 6665681059 has completed (purged errors)
[2025-05-25 05:14:44] 2025-05-25 09:14:29,050 | INFO     | overall cleanup function is called
[2025-05-25 05:14:44] 2025-05-25 09:14:30,056 | INFO     | --- collectZombieJob: --- 10, [79066]
[2025-05-25 05:14:44] 2025-05-25 09:14:30,056 | INFO     | zombie collector waiting for pid 79066
[2025-05-25 05:14:44] 2025-05-25 09:14:30,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 05:14:44] 2025-05-25 09:14:30,057 | INFO     | collected zombie processes
[2025-05-25 05:14:44] 2025-05-25 09:14:30,057 | INFO     | will attempt to kill all subprocesses of pid=79066
[2025-05-25 05:14:44] 2025-05-25 09:14:30,382 | INFO     | process IDs to be killed: [79066] (in reverse order)
[2025-05-25 05:14:44] 2025-05-25 09:14:30,964 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 05:14:44] 2025-05-25 09:14:30,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 05:14:44] 2025-05-25 09:14:30,974 | INFO     | did not find any defunct processes belonging to 79066
[2025-05-25 05:14:44] 2025-05-25 09:14:30,982 | INFO     | did not find any defunct processes belonging to 79066
[2025-05-25 05:14:44] 2025-05-25 09:14:30,982 | INFO     | ready for new job
[2025-05-25 05:14:44] 2025-05-25 09:14:30,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 05:14:44] 2025-05-25 09:14:30,984 | INFO     | **************************************
[2025-05-25 05:14:44] 2025-05-25 09:14:30,984 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 05:14:44] 2025-05-25 09:14:30,984 | INFO     | **************************************
[2025-05-25 05:14:44] 2025-05-25 09:14:30,984 | INFO     | 
[2025-05-25 05:14:44] 2025-05-25 09:14:30,991 | INFO     | architecture information:
[2025-05-25 05:14:44] 2025-05-25 09:14:30,998 | INFO     | executing command: cat /etc/os-release
[2025-05-25 05:14:44] 2025-05-25 09:14:31,014 | INFO     | cat /etc/os-release:
[2025-05-25 05:14:44] NAME="CentOS Linux"
[2025-05-25 05:14:44] VERSION="7 (Core)"
[2025-05-25 05:14:44] ID="centos"
[2025-05-25 05:14:44] ID_LIKE="rhel fedora"
[2025-05-25 05:14:44] VERSION_ID="7"
[2025-05-25 05:14:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 05:14:44] ANSI_COLOR="0;31"
[2025-05-25 05:14:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 05:14:44] HOME_URL="https://www.centos.org/"
[2025-05-25 05:14:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 05:14:44] 
[2025-05-25 05:14:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 05:14:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 05:14:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 05:14:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 05:14:44] 
[2025-05-25 05:14:44] 2025-05-25 09:14:31,014 | INFO     | **************************************
[2025-05-25 05:14:44] 2025-05-25 09:14:31,517 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-05-25 05:14:44] 2025-05-25 09:14:31,731 | INFO     | sufficient remaining disk space (103572045824 B)
[2025-05-25 05:14:44] 2025-05-25 09:14:31,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 05:14:44] 2025-05-25 09:14:31,731 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 05:14:44] 2025-05-25 09:14:31,731 | INFO     | update_server=False
[2025-05-25 05:14:44] 2025-05-25 09:14:31,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 05:14:44] 2025-05-25 09:14:31,838 | INFO     | all data control threads have been joined
[2025-05-25 05:14:44] 2025-05-25 09:14:31,903 | INFO     | all payload control threads have been joined
[2025-05-25 05:14:44] 2025-05-25 09:14:31,942 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 05:14:44] 2025-05-25 09:14:31,943 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 05:14:44] 2025-05-25 09:14:31,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 05:14:44] 2025-05-25 09:14:31,946 | INFO     | will abort loop
[2025-05-25 05:14:44] 2025-05-25 09:14:32,141 | INFO     | all job control threads have been joined
[2025-05-25 05:14:44] 2025-05-25 09:14:32,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 05:14:44] 2025-05-25 09:14:32,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 05:14:44] 2025-05-25 09:14:32,741 | INFO     | [job] retrieve thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:32,849 | INFO     | [data] control thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:32,850 | INFO     | [payload] failed_post thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:32,910 | INFO     | [payload] control thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:32,951 | INFO     | [job] job monitor thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,147 | INFO     | [job] control thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,296 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,317 | INFO     | PID=61973 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-25 05:14:44] 2025-05-25 09:14:33,318 | INFO     | .. there are 18 such processes running
[2025-05-25 05:14:44] 2025-05-25 09:14:33,318 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 05:14:44] 2025-05-25 09:14:33,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 05:14:44] 2025-05-25 09:14:33,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 05:14:44] 2025-05-25 09:14:33,349 | INFO     | [job] validate thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,403 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,633 | INFO     | [payload] validate_post thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,686 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:33,953 | INFO     | [data] copytool_in thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:34,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 05:14:44] 2025-05-25 09:14:34,628 | INFO     | [data] copytool_out thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:35,064 | INFO     | [job] queue monitor thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:36,744 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 05:14:44] 2025-05-25 09:14:37,420 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547444463424)>', '<ExcThread(monitor, started 140546630743808)>']
[2025-05-25 05:14:44] 2025-05-25 09:14:38,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 05:14:44] 2025-05-25 09:14:38,351 | INFO     | [monitor] control thread has ended
[2025-05-25 05:14:44] 2025-05-25 09:14:42,447 | INFO     | all workflow threads have been joined
[2025-05-25 05:14:44] 2025-05-25 09:14:42,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 05:14:44] 2025-05-25 09:14:42,452 | INFO     | traces error code: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:42,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 05:14:44] 2025-05-25 09:14:42,855 [wrapper] ==== pilot stdout END ====
[2025-05-25 05:14:44] 2025-05-25 09:14:42,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 05:14:44] 2025-05-25 09:14:42,931 [wrapper] pilotpid: 61973
[2025-05-25 05:14:44] 2025-05-25 09:14:42,970 [wrapper] Pilot exit status: 0
[2025-05-25 05:14:44] 2025-05-25 09:14:43,210 [wrapper] pandaids: 6665681059
[2025-05-25 05:14:44] 2025-05-25 09:14:43,519 [wrapper] cleanup supervisor_pilot 30282 61974
[2025-05-25 05:14:44] 2025-05-25 09:14:43,571 [wrapper] Test setup, not cleaning
[2025-05-25 05:14:44] 2025-05-25 09:14:43,611 [wrapper] apfmon messages muted
[2025-05-25 05:14:44] 2025-05-25 09:14:43,678 [wrapper] ==== wrapper stdout END ====
[2025-05-25 05:14:44] 2025-05-25 09:14:43,720 [wrapper] ==== wrapper stderr END ====
[2025-05-25 05:14:44]  *** Error codes and diagnostics ***
[2025-05-25 05:14:44]     "exeErrorCode": 0,
[2025-05-25 05:14:44]     "exeErrorDiag": "",
[2025-05-25 05:14:44]     "pilotErrorCode": 0,
[2025-05-25 05:14:44]     "pilotErrorDiag": "",
[2025-05-25 05:14:44]  *** Listing of results directory ***
[2025-05-25 05:14:44] total 426384
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas    495897 May 24 17:20 pilot3.tar.gz
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas      5111 May 24 17:35 queuedata.json
[2025-05-25 05:14:44] -rwx------ 1 boincer umatlas     37140 May 24 17:36 runpilot2-wrapper.sh
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas       100 May 24 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 05:14:44] -rwxr-xr-x 1 boincer umatlas      7986 May 24 23:57 run_atlas
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas       105 May 24 23:57 job.xml
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas 226132988 May 24 23:57 EVNT.44871834._000978.pool.root.1
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas     15093 May 24 23:57 start_atlas.sh
[2025-05-25 05:14:44] drwxrwx--x 2 boincer umatlas      4096 May 24 23:57 shared
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas    508880 May 24 23:57 input.tar.gz
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas         0 May 24 23:57 boinc_lockfile
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas      2558 May 24 23:57 pandaJob.out
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas    990803 May 24 23:57 agis_schedconf.cvmfs.json
[2025-05-25 05:14:44] drwx------ 4 boincer umatlas      4096 May 24 23:57 pilot3
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas      6386 May 25 05:10 init_data.xml
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas 202531568 May 25 05:12 HITS.44871837._024534.pool.root.1
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas       531 May 25 05:12 boinc_task_state.xml
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas      1074 May 25 05:13 memory_monitor_summary.json
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas   1596740 May 25 05:13 agis_ddmendpoints.agis.ALL.json
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas    437647 May 25 05:13 log.44871837._024534.job.log.tgz.1
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas      7745 May 25 05:14 heartbeat.json
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas        95 May 25 05:14 pilot_heartbeat.json
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas      4933 May 25 05:14 pilotlog.txt
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas   1623686 May 25 05:14 log.44871837._024534.job.log.1
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas      8192 May 25 05:14 boinc_mmap_file
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas        28 May 25 05:14 wrapper_checkpoint.txt
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas       357 May 25 05:14 output.list
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas       620 May 25 05:14 runtime_log
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas   2078720 May 25 05:14 result.tar.gz
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas       662 May 25 05:14 wcFNDmYiBd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrPNKDmLHa6Cn.diag
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas      8655 May 25 05:14 runtime_log.err
[2025-05-25 05:14:44] -rw-r--r-- 1 boincer umatlas     20963 May 25 05:14 stderr.txt
[2025-05-25 05:14:44] HITS file was successfully produced:
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas 202531568 May 25 05:12 shared/HITS.pool.root.1
[2025-05-25 05:14:44]  *** Contents of shared directory: ***
[2025-05-25 05:14:44] total 421176
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas 226132988 May 24 23:57 ATLAS.root_0
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas     15093 May 24 23:57 start_atlas.sh
[2025-05-25 05:14:44] -rw-r--r-- 2 boincer umatlas    508880 May 24 23:57 input.tar.gz
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas 202531568 May 25 05:12 HITS.pool.root.1
[2025-05-25 05:14:44] -rw------- 1 boincer umatlas   2078720 May 25 05:14 result.tar.gz
05:14:46 (50677): run_atlas exited; CPU time 45613.406313
05:14:46 (50677): called boinc_finish(0)

</stderr_txt>
]]>

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