Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:19 (1912349): wrapper (7.7.26015): starting
18:09:19 (1912349): wrapper: running run_atlas (--nthreads 6)
[2025-05-25 18:09:19] Arguments: --nthreads 6
[2025-05-25 18:09:19] Threads: 6
[2025-05-25 18:09:19] Checking for CVMFS
[2025-05-25 18:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 18:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 18:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 18:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 18:09:20] 2.11.5.0 1050432 1656 74280 146395 2 187 19295263 20971520 885 130560 0 2338436 99.994 391577 89 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-05-25 18:09:20] CVMFS is ok
[2025-05-25 18:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 18:09:20] Checking for apptainer binary...
[2025-05-25 18:09:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 18:09:20] Running /usr/bin/apptainer --version
[2025-05-25 18:09:20] apptainer version 1.3.6-1.el9
[2025-05-25 18:09:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 18:09:20] testio006
[2025-05-25 18:09:20] apptainer works
[2025-05-25 18:09:20] Set ATHENA_PROC_NUMBER=6
[2025-05-25 18:09:20] Set ATHENA_CORE_NUMBER=6
[2025-05-25 18:09:20] Starting ATLAS job with PandaID=6665680687
[2025-05-25 18:09:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 20:03:28]  *** The last 200 lines of the pilot log: ***
[2025-05-25 20:03:28] 2025-05-25 11:03:08,401 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6665680687/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,402 | INFO     | extracted standard info from prmon json
[2025-05-25 20:03:28] 2025-05-25 11:03:08,402 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 20:03:28] 2025-05-25 11:03:08,402 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 20:03:28] 2025-05-25 11:03:08,402 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 20:03:28] 2025-05-25 11:03:08,402 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 20:03:28] 2025-05-25 11:03:08,403 | INFO     | fitting pss+swap vs Time
[2025-05-25 20:03:28] 2025-05-25 11:03:08,403 | INFO     | sum of square deviations: 363717956.5742573
[2025-05-25 20:03:28] 2025-05-25 11:03:08,403 | INFO     | sum of deviations: 42572724687.65346
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | mean x: 1748167783.8811882
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | mean y: 2318938.5544554456
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | -- intersect: -204618498994.0474
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | intersect: -204618498994.0474
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | chi2: 4.51494261368944
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | sum of square deviations: 316301677.48958343
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | sum of deviations: 47428955361.875015
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | mean x: 1748167627.5729167
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | mean y: 2334083.875
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | -- intersect: -262132742249.89297
[2025-05-25 20:03:28] 2025-05-25 11:03:08,404 | INFO     | intersect: -262132742249.89297
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | chi2: 3.6557610849145896
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | current chi2=3.6557610849145896 (change=19.02973309494093 %)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | right removable region: 95
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | sum of square deviations: 300125707.33333236
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | sum of deviations: 15168271003.166676
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | mean x: 1748167964.9166667
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | mean y: 2396618.3958333335
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | -- intersect: -88349533266.30351
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | intersect: -88349533266.30351
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | chi2: 2.2304361849979317
[2025-05-25 20:03:28] 2025-05-25 11:03:08,405 | INFO     | current chi2=2.2304361849979317 (change=50.59879214776323 %)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | sum of square deviations: 240825137.29670346
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | sum of deviations: -5677084579.956044
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | mean x: 1748168149.087912
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | mean y: 2461381.4945054944
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | -- intersect: 41212853925.06864
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | intersect: 41212853925.06864
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | chi2: 0.9811528161584837
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | current chi2=0.9811528161584837 (change=56.0107201112596 %)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | sum of square deviations: 197197340.93023226
[2025-05-25 20:03:28] 2025-05-25 11:03:08,406 | INFO     | sum of deviations: -11213820943.116282
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | mean x: 1748168314.5813954
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | mean y: 2482168.302325581
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | -- intersect: 99413794540.31268
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | intersect: 99413794540.31268
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | chi2: 0.823042137234137
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | current chi2=0.823042137234137 (change=16.11478623109893 %)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | left removable region: 30
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | sum of square deviations: 85126280.24615383
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | sum of deviations: -3183249304.307692
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | mean x: 1748168589.1076922
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | mean y: 2499680.6153846155
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | -- intersect: 65374279452.950165
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | intersect: 65374279452.950165
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | chi2: 0.016337382995682603
[2025-05-25 20:03:28] 2025-05-25 11:03:08,407 | INFO     | -- intersect: 65374279452.950165
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | current memory leak: -37.39 B/s (using 65 data points, chi2=0.02)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | ..............................
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . Timing measurements:
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . get job = 0 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . initial setup = 4 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . payload setup = 2 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . stage-in = 0 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . payload execution = 6731 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . stage-out = 0 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | . log creation = 0 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,408 | INFO     | ..............................
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | 
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | job summary report
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | --------------------------------------------------
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | PanDA job id: 6665680687
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | task id: 44871837
[2025-05-25 20:03:28] 2025-05-25 11:03:08,460 | INFO     | errors: (none)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | pilot state: finished 
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | transexitcode: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | exeerrorcode: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | exeerrordiag: 
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | exitcode: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | exitmsg: OK
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | cpuconsumptiontime: 31267 s
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | nevents: 400
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | neventsw: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | pid: 1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | pgrp: 1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | corecount: 6
[2025-05-25 20:03:28] 2025-05-25 11:03:08,461 | INFO     | event service: False
[2025-05-25 20:03:28] 2025-05-25 11:03:08,462 | INFO     | sizes: {0: 2393568, 1: 2393767, 3: 2393973, 11: 2394001, 6737: 2420700, 6738: 2429641, 6741: 2429825, 6807: 2429995}
[2025-05-25 20:03:28] 2025-05-25 11:03:08,462 | INFO     | --------------------------------------------------
[2025-05-25 20:03:28] 2025-05-25 11:03:08,462 | INFO     | 
[2025-05-25 20:03:28] 2025-05-25 11:03:08,462 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-05-25 20:03:28] 2025-05-25 11:03:08,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 20:03:28] 2025-05-25 11:03:08,477 | INFO     | job 6665680687 has completed (purged errors)
[2025-05-25 20:03:28] 2025-05-25 11:03:08,477 | INFO     | overall cleanup function is called
[2025-05-25 20:03:28] 2025-05-25 11:03:09,483 | INFO     | --- collectZombieJob: --- 10, [1922580]
[2025-05-25 20:03:28] 2025-05-25 11:03:09,483 | INFO     | zombie collector waiting for pid 1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:09,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 20:03:28] 2025-05-25 11:03:09,483 | INFO     | collected zombie processes
[2025-05-25 20:03:28] 2025-05-25 11:03:09,483 | INFO     | will attempt to kill all subprocesses of pid=1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:09,549 | INFO     | process IDs to be killed: [1922580] (in reverse order)
[2025-05-25 20:03:28] 2025-05-25 11:03:09,587 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 20:03:28] 2025-05-25 11:03:09,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 20:03:28] 2025-05-25 11:03:09,590 | INFO     | did not find any defunct processes belonging to 1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:09,592 | INFO     | did not find any defunct processes belonging to 1922580
[2025-05-25 20:03:28] 2025-05-25 11:03:09,592 | INFO     | ready for new job
[2025-05-25 20:03:28] 2025-05-25 11:03:09,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 20:03:28] 2025-05-25 11:03:09,593 | INFO     | **************************************
[2025-05-25 20:03:28] 2025-05-25 11:03:09,593 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 20:03:28] 2025-05-25 11:03:09,593 | INFO     | **************************************
[2025-05-25 20:03:28] 2025-05-25 11:03:09,593 | INFO     | 
[2025-05-25 20:03:28] 2025-05-25 11:03:09,594 | INFO     | architecture information:
[2025-05-25 20:03:28] 2025-05-25 11:03:09,594 | INFO     | executing command: cat /etc/os-release
[2025-05-25 20:03:28] 2025-05-25 11:03:09,603 | INFO     | cat /etc/os-release:
[2025-05-25 20:03:28] NAME="CentOS Linux"
[2025-05-25 20:03:28] VERSION="7 (Core)"
[2025-05-25 20:03:28] ID="centos"
[2025-05-25 20:03:28] ID_LIKE="rhel fedora"
[2025-05-25 20:03:28] VERSION_ID="7"
[2025-05-25 20:03:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 20:03:28] ANSI_COLOR="0;31"
[2025-05-25 20:03:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 20:03:28] HOME_URL="https://www.centos.org/"
[2025-05-25 20:03:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 20:03:28] 
[2025-05-25 20:03:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 20:03:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 20:03:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 20:03:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 20:03:28] 
[2025-05-25 20:03:28] 2025-05-25 11:03:09,603 | INFO     | **************************************
[2025-05-25 20:03:28] 2025-05-25 11:03:10,105 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | INFO     | sufficient remaining disk space (77390151680 B)
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | INFO     | update_server=False
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 20:03:28] 2025-05-25 11:03:10,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 20:03:28] 2025-05-25 11:03:10,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 20:03:28] 2025-05-25 11:03:10,167 | INFO     | all job control threads have been joined
[2025-05-25 20:03:28] 2025-05-25 11:03:10,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 20:03:28] 2025-05-25 11:03:10,203 | INFO     | aborting loop
[2025-05-25 20:03:28] 2025-05-25 11:03:10,656 | INFO     | all data control threads have been joined
[2025-05-25 20:03:28] 2025-05-25 11:03:10,766 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 20:03:28] 2025-05-25 11:03:10,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 20:03:28] 2025-05-25 11:03:10,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 20:03:28] 2025-05-25 11:03:10,864 | INFO     | all payload control threads have been joined
[2025-05-25 20:03:28] 2025-05-25 11:03:11,122 | INFO     | [job] retrieve thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,123 | INFO     | [job] queue monitor thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,172 | INFO     | [job] control thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,208 | INFO     | [job] job monitor thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 20:03:28] 2025-05-25 11:03:11,586 | INFO     | [job] validate thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,619 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,625 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,629 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,662 | INFO     | [data] control thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,691 | INFO     | [payload] validate_post thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,844 | INFO     | [payload] failed_post thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:11,868 | INFO     | [payload] control thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:12,123 | INFO     | [data] copytool_out thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:12,557 | INFO     | [data] copytool_in thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:15,425 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:21,130 | INFO     | job.realtimelogging is not enabled
[2025-05-25 20:03:28] 2025-05-25 11:03:22,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 20:03:28] 2025-05-25 11:03:23,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838098745152)>', '<ExcThread(monitor, started 139837583632128)>']
[2025-05-25 20:03:28] 2025-05-25 11:03:23,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 20:03:28] 2025-05-25 11:03:23,830 | INFO     | [monitor] control thread has ended
[2025-05-25 20:03:28] 2025-05-25 11:03:28,766 | INFO     | all workflow threads have been joined
[2025-05-25 20:03:28] 2025-05-25 11:03:28,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 20:03:28] 2025-05-25 11:03:28,767 | INFO     | traces error code: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:28,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 20:03:28] 2025-05-25 11:03:28,838 [wrapper] ==== pilot stdout END ====
[2025-05-25 20:03:28] 2025-05-25 11:03:28,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 20:03:28] 2025-05-25 11:03:28,842 [wrapper] pilotpid: 1916048
[2025-05-25 20:03:28] 2025-05-25 11:03:28,844 [wrapper] Pilot exit status: 0
[2025-05-25 20:03:28] 2025-05-25 11:03:28,850 [wrapper] pandaids: 6665680687
[2025-05-25 20:03:28] 2025-05-25 11:03:28,876 [wrapper] cleanup supervisor_pilot 1942935 1916049
[2025-05-25 20:03:28] 2025-05-25 11:03:28,878 [wrapper] Test setup, not cleaning
[2025-05-25 20:03:28] 2025-05-25 11:03:28,880 [wrapper] apfmon messages muted
[2025-05-25 20:03:28] 2025-05-25 11:03:28,882 [wrapper] ==== wrapper stdout END ====
[2025-05-25 20:03:28] 2025-05-25 11:03:28,883 [wrapper] ==== wrapper stderr END ====
[2025-05-25 20:03:28]  *** Error codes and diagnostics ***
[2025-05-25 20:03:28]     "exeErrorCode": 0,
[2025-05-25 20:03:28]     "exeErrorDiag": "",
[2025-05-25 20:03:28]     "pilotErrorCode": 0,
[2025-05-25 20:03:28]     "pilotErrorDiag": "",
[2025-05-25 20:03:28]  *** Listing of results directory ***
[2025-05-25 20:03:28] total 419576
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc    495897 May 25 06:20 pilot3.tar.gz
[2025-05-25 20:03:28] -rwx------. 1 boinc boinc     37140 May 25 06:24 runpilot2-wrapper.sh
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc      5111 May 25 06:24 queuedata.json
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc       100 May 25 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 20:03:28] -rwxr-xr-x. 1 boinc boinc      7986 May 25 18:09 run_atlas
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc       105 May 25 18:09 job.xml
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc     15093 May 25 18:09 start_atlas.sh
[2025-05-25 20:03:28] drwxrwx--x. 2 boinc boinc        68 May 25 18:09 shared
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc    508871 May 25 18:09 input.tar.gz
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc      9464 May 25 18:09 init_data.xml
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc 222680062 May 25 18:09 EVNT.44871834._000970.pool.root.1
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc         0 May 25 18:09 boinc_lockfile
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc      2558 May 25 18:09 pandaJob.out
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc    990811 May 25 18:09 agis_schedconf.cvmfs.json
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc   1596740 May 25 18:09 agis_ddmendpoints.agis.ALL.json
[2025-05-25 20:03:28] drwx------. 4 boinc boinc      4096 May 25 18:09 pilot3
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc 201382914 May 25 20:01 HITS.44871837._024333.pool.root.1
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc      1018 May 25 20:01 memory_monitor_summary.json
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc       530 May 25 20:01 boinc_task_state.xml
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc    286380 May 25 20:01 log.44871837._024333.job.log.tgz.1
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc        96 May 25 20:02 pilot_heartbeat.json
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc      7667 May 25 20:03 heartbeat.json
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc      8192 May 25 20:03 boinc_mmap_file
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc        27 May 25 20:03 wrapper_checkpoint.txt
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc      4425 May 25 20:03 pilotlog.txt
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc    595514 May 25 20:03 log.44871837._024333.job.log.1
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc       357 May 25 20:03 output.list
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc       620 May 25 20:03 runtime_log
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc    901120 May 25 20:03 result.tar.gz
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc      8617 May 25 20:03 runtime_log.err
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc       642 May 25 20:03 HPUNDmPXBd7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7NNKDmoynDKo.diag
[2025-05-25 20:03:28] -rw-r--r--. 1 boinc boinc     20566 May 25 20:03 stderr.txt
[2025-05-25 20:03:28] HITS file was successfully produced:
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc 201382914 May 25 20:01 shared/HITS.pool.root.1
[2025-05-25 20:03:28]  *** Contents of shared directory: ***
[2025-05-25 20:03:28] total 415524
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc     15093 May 25 18:09 start_atlas.sh
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc    508871 May 25 18:09 input.tar.gz
[2025-05-25 20:03:28] -rw-r--r--. 2 boinc boinc 222680062 May 25 18:09 ATLAS.root_0
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc 201382914 May 25 20:01 HITS.pool.root.1
[2025-05-25 20:03:28] -rw-------. 1 boinc boinc    901120 May 25 20:03 result.tar.gz
20:03:30 (1912349): run_atlas exited; CPU time 31324.122392
20:03:30 (1912349): called boinc_finish(0)

</stderr_txt>
]]>

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