Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:53:52 (3628641): wrapper (7.7.26015): starting
03:53:52 (3628641): wrapper: running run_atlas (--nthreads 9)
[2025-05-25 03:53:52] Arguments: --nthreads 9
[2025-05-25 03:53:52] Threads: 9
[2025-05-25 03:53:52] Checking for CVMFS
[2025-05-25 03:53:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 03:53:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 03:53:54] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 03:53:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 03:53:55] 2.12.6.0 3369999 8597 284984 146394 3 744 16907877 32935937 19438 16776704 0 27608248 99.499 36292382 38198 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 03:53:55] CVMFS is ok
[2025-05-25 03:53:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 03:53:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 03:53:55] Further information can be found at the LHC@home message board.
[2025-05-25 03:53:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 03:53:55] Checking for apptainer binary...
[2025-05-25 03:53:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 03:53:55] Running /usr/bin/apptainer --version
[2025-05-25 03:53:55] apptainer version 1.4.1-1.el9
[2025-05-25 03:53:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 03:53:56] c6-2-29-1.aglt2.org
[2025-05-25 03:53:56] apptainer works
[2025-05-25 03:53:56] Set ATHENA_PROC_NUMBER=9
[2025-05-25 03:53:56] Set ATHENA_CORE_NUMBER=9
[2025-05-25 03:53:56] Starting ATLAS job with PandaID=6665679199
[2025-05-25 03:53:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:46:05 (367047): wrapper (7.7.26015): starting
06:46:05 (367047): wrapper: running run_atlas (--nthreads 9)
[2025-05-25 06:46:05] Arguments: --nthreads 9
[2025-05-25 06:46:05] Threads: 9
[2025-05-25 06:46:05] This job has been restarted, cleaning up previous attempt
[2025-05-25 06:46:05] Checking for CVMFS
[2025-05-25 06:46:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 06:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 06:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 06:46:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 06:46:06] 2.12.6.0 3369999 8769 270484 146399 3 417 20424074 32935937 15020 16776704 0 28406672 99.494 37573660 38153 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 06:46:06] CVMFS is ok
[2025-05-25 06:46:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 06:46:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 06:46:06] Further information can be found at the LHC@home message board.
[2025-05-25 06:46:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 06:46:06] Checking for apptainer binary...
[2025-05-25 06:46:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 06:46:06] Running /usr/bin/apptainer --version
[2025-05-25 06:46:06] apptainer version 1.4.1-1.el9
[2025-05-25 06:46:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 06:46:06] c6-2-29-1.aglt2.org
[2025-05-25 06:46:06] apptainer works
[2025-05-25 06:46:06] Set ATHENA_PROC_NUMBER=9
[2025-05-25 06:46:06] Set ATHENA_CORE_NUMBER=9
[2025-05-25 06:46:06] Starting ATLAS job with PandaID=6665679199
[2025-05-25 06:46:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 12:07:42]  *** The last 200 lines of the pilot log: ***
[2025-05-25 12:07:42] 2025-05-25 16:07:28,268 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-25 12:07:42] 2025-05-25 16:07:28,269 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6665679199/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,270 | INFO     | extracted standard info from prmon json
[2025-05-25 12:07:42] 2025-05-25 16:07:28,270 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 12:07:42] 2025-05-25 16:07:28,270 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 12:07:42] 2025-05-25 16:07:28,270 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 12:07:42] 2025-05-25 16:07:28,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 12:07:42] 2025-05-25 16:07:28,292 | INFO     | fitting pss+swap vs Time
[2025-05-25 12:07:42] 2025-05-25 16:07:28,293 | INFO     | sum of square deviations: 9784894975.83542
[2025-05-25 12:07:42] 2025-05-25 16:07:28,299 | INFO     | sum of deviations: 81060985481.6329
[2025-05-25 12:07:42] 2025-05-25 16:07:28,300 | INFO     | mean x: 1748179612.8037975
[2025-05-25 12:07:42] 2025-05-25 16:07:28,300 | INFO     | mean y: 2146088.639240506
[2025-05-25 12:07:42] 2025-05-25 16:07:28,300 | INFO     | -- intersect: -14480294710.443157
[2025-05-25 12:07:42] 2025-05-25 16:07:28,300 | INFO     | intersect: -14480294710.443157
[2025-05-25 12:07:42] 2025-05-25 16:07:28,300 | INFO     | chi2: 2.3845798797462376
[2025-05-25 12:07:42] 2025-05-25 16:07:28,301 | INFO     | sum of square deviations: 9327723337.18969
[2025-05-25 12:07:42] 2025-05-25 16:07:28,338 | INFO     | sum of deviations: 97022833911.23148
[2025-05-25 12:07:42] 2025-05-25 16:07:28,338 | INFO     | mean x: 1748179460.2990353
[2025-05-25 12:07:42] 2025-05-25 16:07:28,338 | INFO     | mean y: 2151338.77170418
[2025-05-25 12:07:42] 2025-05-25 16:07:28,338 | INFO     | -- intersect: -18181634703.35609
[2025-05-25 12:07:42] 2025-05-25 16:07:28,338 | INFO     | intersect: -18181634703.35609
[2025-05-25 12:07:42] 2025-05-25 16:07:28,339 | INFO     | chi2: 1.7263560891653338
[2025-05-25 12:07:42] 2025-05-25 16:07:28,339 | INFO     | current chi2=1.7263560891653338 (change=27.603344143411572 %)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,339 | INFO     | sum of square deviations: 8884997992.614439
[2025-05-25 12:07:42] 2025-05-25 16:07:28,379 | INFO     | sum of deviations: 93346187547.18953
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | mean x: 1748179307.7908497
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | mean y: 2150070.924836601
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | -- intersect: -18364300171.02313
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | intersect: -18364300171.02313
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | chi2: 1.7266039710163146
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | current chi2=1.7266039710163146 (change=-0.014358674466786176 %)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,380 | INFO     | right removable region: 305
[2025-05-25 12:07:42] 2025-05-25 16:07:28,381 | INFO     | sum of square deviations: 9327722240.366524
[2025-05-25 12:07:42] 2025-05-25 16:07:28,383 | INFO     | sum of deviations: 31577676977.382652
[2025-05-25 12:07:42] 2025-05-25 16:07:28,420 | INFO     | mean x: 1748179765.3086817
[2025-05-25 12:07:42] 2025-05-25 16:07:28,421 | INFO     | mean y: 2162514.006430868
[2025-05-25 12:07:42] 2025-05-25 16:07:28,421 | INFO     | -- intersect: -5916051440.566149
[2025-05-25 12:07:42] 2025-05-25 16:07:28,421 | INFO     | intersect: -5916051440.566149
[2025-05-25 12:07:42] 2025-05-25 16:07:28,421 | INFO     | chi2: 0.8469504741359415
[2025-05-25 12:07:42] 2025-05-25 16:07:28,421 | INFO     | current chi2=0.8469504741359415 (change=64.48219322281322 %)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,422 | INFO     | sum of square deviations: 8885014892.382397
[2025-05-25 12:07:42] 2025-05-25 16:07:28,424 | INFO     | sum of deviations: 24983036656.08825
[2025-05-25 12:07:42] 2025-05-25 16:07:28,424 | INFO     | mean x: 1748179917.8137255
[2025-05-25 12:07:42] 2025-05-25 16:07:28,424 | INFO     | mean y: 2164755.2647058824
[2025-05-25 12:07:42] 2025-05-25 16:07:28,464 | INFO     | -- intersect: -4913397401.600383
[2025-05-25 12:07:42] 2025-05-25 16:07:28,464 | INFO     | intersect: -4913397401.600383
[2025-05-25 12:07:42] 2025-05-25 16:07:28,493 | INFO     | chi2: 0.7808026091568901
[2025-05-25 12:07:42] 2025-05-25 16:07:28,493 | INFO     | current chi2=0.7808026091568901 (change=7.810121960972436 %)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,493 | INFO     | left removable region: 20
[2025-05-25 12:07:42] 2025-05-25 16:07:28,494 | INFO     | sum of square deviations: 7178378816.828103
[2025-05-25 12:07:42] 2025-05-25 16:07:28,496 | INFO     | sum of deviations: 41677067006.691246
[2025-05-25 12:07:42] 2025-05-25 16:07:28,496 | INFO     | mean x: 1748179887.3087718
[2025-05-25 12:07:42] 2025-05-25 16:07:28,506 | INFO     | mean y: 2168000.003508772
[2025-05-25 12:07:42] 2025-05-25 16:07:28,506 | INFO     | -- intersect: -10147618206.920536
[2025-05-25 12:07:42] 2025-05-25 16:07:28,506 | INFO     | intersect: -10147618206.920536
[2025-05-25 12:07:42] 2025-05-25 16:07:28,507 | INFO     | chi2: 0.09193829970666122
[2025-05-25 12:07:42] 2025-05-25 16:07:28,507 | INFO     | -- intersect: -10147618206.920536
[2025-05-25 12:07:42] 2025-05-25 16:07:28,507 | INFO     | current memory leak: 5.81 B/s (using 285 data points, chi2=0.09)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | ..............................
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . Timing measurements:
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . get job = 0 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . initial setup = 1 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . payload setup = 7 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . stage-in = 0 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . payload execution = 19224 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . stage-out = 5 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | . log creation = 0 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,508 | INFO     | ..............................
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | 
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | job summary report
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | --------------------------------------------------
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | PanDA job id: 6665679199
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | task id: 44871837
[2025-05-25 12:07:42] 2025-05-25 16:07:28,769 | INFO     | errors: (none)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | pilot state: finished 
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | transexitcode: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | exeerrorcode: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | exeerrordiag: 
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | exitcode: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | exitmsg: OK
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | cpuconsumptiontime: 50494 s
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | nevents: 400
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | neventsw: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | pid: 398246
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | pgrp: 398246
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | corecount: 9
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | event service: False
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | sizes: {0: 2393739, 5: 2393945, 11: 2394001, 19236: 2426705, 19242: 2435646, 19245: 2435702, 19257: 2436000}
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | --------------------------------------------------
[2025-05-25 12:07:42] 2025-05-25 16:07:28,770 | INFO     | 
[2025-05-25 12:07:42] 2025-05-25 16:07:28,771 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-25 12:07:42] 2025-05-25 16:07:28,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 12:07:42] 2025-05-25 16:07:28,885 | INFO     | job 6665679199 has completed (purged errors)
[2025-05-25 12:07:42] 2025-05-25 16:07:28,885 | INFO     | overall cleanup function is called
[2025-05-25 12:07:42] 2025-05-25 16:07:29,894 | INFO     | --- collectZombieJob: --- 10, [398246]
[2025-05-25 12:07:42] 2025-05-25 16:07:29,894 | INFO     | zombie collector waiting for pid 398246
[2025-05-25 12:07:42] 2025-05-25 16:07:29,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 12:07:42] 2025-05-25 16:07:29,894 | INFO     | collected zombie processes
[2025-05-25 12:07:42] 2025-05-25 16:07:29,894 | INFO     | will attempt to kill all subprocesses of pid=398246
[2025-05-25 12:07:42] 2025-05-25 16:07:31,067 | INFO     | process IDs to be killed: [398246] (in reverse order)
[2025-05-25 12:07:42] 2025-05-25 16:07:31,438 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 12:07:42] 2025-05-25 16:07:31,439 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 12:07:42] 2025-05-25 16:07:31,489 | INFO     | did not find any defunct processes belonging to 398246
[2025-05-25 12:07:42] 2025-05-25 16:07:31,503 | INFO     | did not find any defunct processes belonging to 398246
[2025-05-25 12:07:42] 2025-05-25 16:07:31,504 | INFO     | ready for new job
[2025-05-25 12:07:42] 2025-05-25 16:07:31,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 12:07:42] 2025-05-25 16:07:31,506 | INFO     | **************************************
[2025-05-25 12:07:42] 2025-05-25 16:07:31,506 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 12:07:42] 2025-05-25 16:07:31,506 | INFO     | **************************************
[2025-05-25 12:07:42] 2025-05-25 16:07:31,506 | INFO     | 
[2025-05-25 12:07:42] 2025-05-25 16:07:31,509 | INFO     | architecture information:
[2025-05-25 12:07:42] 2025-05-25 16:07:31,510 | INFO     | executing command: cat /etc/os-release
[2025-05-25 12:07:42] 2025-05-25 16:07:31,605 | INFO     | cat /etc/os-release:
[2025-05-25 12:07:42] NAME="CentOS Linux"
[2025-05-25 12:07:42] VERSION="7 (Core)"
[2025-05-25 12:07:42] ID="centos"
[2025-05-25 12:07:42] ID_LIKE="rhel fedora"
[2025-05-25 12:07:42] VERSION_ID="7"
[2025-05-25 12:07:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 12:07:42] ANSI_COLOR="0;31"
[2025-05-25 12:07:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 12:07:42] HOME_URL="https://www.centos.org/"
[2025-05-25 12:07:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 12:07:42] 
[2025-05-25 12:07:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 12:07:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 12:07:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 12:07:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 12:07:42] 
[2025-05-25 12:07:42] 2025-05-25 16:07:31,606 | INFO     | **************************************
[2025-05-25 12:07:42] 2025-05-25 16:07:32,110 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-25 12:07:42] 2025-05-25 16:07:32,288 | INFO     | sufficient remaining disk space (74685874176 B)
[2025-05-25 12:07:42] 2025-05-25 16:07:32,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 12:07:42] 2025-05-25 16:07:32,289 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 12:07:42] 2025-05-25 16:07:32,289 | INFO     | update_server=False
[2025-05-25 12:07:42] 2025-05-25 16:07:32,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 12:07:42] 2025-05-25 16:07:32,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 12:07:42] 2025-05-25 16:07:32,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 12:07:42] 2025-05-25 16:07:32,881 | INFO     | all data control threads have been joined
[2025-05-25 12:07:42] 2025-05-25 16:07:32,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 12:07:42] 2025-05-25 16:07:32,923 | INFO     | aborting loop
[2025-05-25 12:07:42] 2025-05-25 16:07:33,181 | INFO     | all payload control threads have been joined
[2025-05-25 12:07:42] 2025-05-25 16:07:33,246 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 12:07:42] 2025-05-25 16:07:33,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 12:07:42] 2025-05-25 16:07:33,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 12:07:42] 2025-05-25 16:07:33,295 | INFO     | [job] retrieve thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,528 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,557 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,601 | INFO     | all job control threads have been joined
[2025-05-25 12:07:42] 2025-05-25 16:07:33,635 | INFO     | [data] copytool_in thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 12:07:42] 2025-05-25 16:07:33,887 | INFO     | [data] control thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:33,929 | INFO     | [job] job monitor thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,189 | INFO     | [payload] control thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,327 | INFO     | [data] copytool_out thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,443 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,467 | INFO     | [job] validate thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,502 | INFO     | [payload] failed_post thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,607 | INFO     | [job] control thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,794 | INFO     | [job] queue monitor thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:34,871 | INFO     | [payload] validate_post thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:36,329 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 12:07:42] 2025-05-25 16:07:36,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436080940864)>', '<ExcThread(monitor, started 140435162920704)>']
[2025-05-25 12:07:42] 2025-05-25 16:07:37,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 12:07:42] 2025-05-25 16:07:37,270 | INFO     | [monitor] control thread has ended
[2025-05-25 12:07:42] 2025-05-25 16:07:41,423 | INFO     | all workflow threads have been joined
[2025-05-25 12:07:42] 2025-05-25 16:07:41,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 12:07:42] 2025-05-25 16:07:41,424 | INFO     | traces error code: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:41,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 12:07:42] 2025-05-25 16:07:42,075 [wrapper] ==== pilot stdout END ====
[2025-05-25 12:07:42] 2025-05-25 16:07:42,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 12:07:42] 2025-05-25 16:07:42,119 [wrapper] pilotpid: 378836
[2025-05-25 12:07:42] 2025-05-25 16:07:42,126 [wrapper] Pilot exit status: 0
[2025-05-25 12:07:42] 2025-05-25 16:07:42,172 [wrapper] pandaids: 6665679199 6665679199
[2025-05-25 12:07:42] 2025-05-25 16:07:42,266 [wrapper] cleanup supervisor_pilot 1789001 378837
[2025-05-25 12:07:42] 2025-05-25 16:07:42,274 [wrapper] Test setup, not cleaning
[2025-05-25 12:07:42] 2025-05-25 16:07:42,288 [wrapper] apfmon messages muted
[2025-05-25 12:07:42] 2025-05-25 16:07:42,291 [wrapper] ==== wrapper stdout END ====
[2025-05-25 12:07:42] 2025-05-25 16:07:42,293 [wrapper] ==== wrapper stderr END ====
[2025-05-25 12:07:42]  *** Error codes and diagnostics ***
[2025-05-25 12:07:42]     "exeErrorCode": 0,
[2025-05-25 12:07:42]     "exeErrorDiag": "",
[2025-05-25 12:07:42]     "pilotErrorCode": 0,
[2025-05-25 12:07:42]     "pilotErrorDiag": "",
[2025-05-25 12:07:42]  *** Listing of results directory ***
[2025-05-25 12:07:42] total 635720
[2025-05-25 12:07:42] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas    495897 May 24 15:53 pilot3.tar.gz
[2025-05-25 12:07:42] -rwx------. 1 boincer umatlas     37140 May 24 16:22 runpilot2-wrapper.sh
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas      5111 May 24 16:22 queuedata.json
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas       100 May 25 03:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 12:07:42] -rwxr-xr-x. 1 boincer umatlas      7986 May 25 03:53 run_atlas
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas       105 May 25 03:53 job.xml
[2025-05-25 12:07:42] -rw-r--r--. 3 boincer umatlas 224197969 May 25 03:53 EVNT.44871834._000933.pool.root.1
[2025-05-25 12:07:42] -rw-r--r--. 3 boincer umatlas 224197969 May 25 03:53 ATLAS.root_0
[2025-05-25 12:07:42] drwxrwx--x. 2 boincer umatlas      4096 May 25 03:53 shared
[2025-05-25 12:07:42] -rw-r--r--. 2 boincer umatlas    508877 May 25 03:53 input.tar.gz
[2025-05-25 12:07:42] -rw-r--r--. 2 boincer umatlas     15093 May 25 03:53 start_atlas.sh
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas         0 May 25 03:53 boinc_lockfile
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas      2558 May 25 06:46 pandaJob.out
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas    990811 May 25 06:46 agis_schedconf.cvmfs.json
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas      6841 May 25 12:03 init_data.xml
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas 194596746 May 25 12:06 HITS.44871837._023422.pool.root.1
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas       531 May 25 12:06 boinc_task_state.xml
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas        96 May 25 12:06 pilot_heartbeat.json
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas      1054 May 25 12:07 memory_monitor_summary.json
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas   1596740 May 25 12:07 agis_ddmendpoints.agis.ALL.json
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas    466922 May 25 12:07 log.44871837._023422.job.log.tgz.1
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas      7722 May 25 12:07 heartbeat.json
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas      8192 May 25 12:07 boinc_mmap_file
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas        28 May 25 12:07 wrapper_checkpoint.txt
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas      4353 May 25 12:07 pilotlog.txt
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas   1611918 May 25 12:07 log.44871837._023422.job.log.1
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas       357 May 25 12:07 output.list
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas       620 May 25 12:07 runtime_log
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas   2099200 May 25 12:07 result.tar.gz
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas      8750 May 25 12:07 runtime_log.err
[2025-05-25 12:07:42] -rw-------. 1 boincer umatlas       782 May 25 12:07 dV3MDmrYAd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZUSKDmEP9zYn.diag
[2025-05-25 12:07:42] -rw-r--r--. 1 boincer umatlas     23045 May 25 12:07 stderr.txt
[2025-05-25 12:07:43] HITS file was successfully produced:
[2025-05-25 12:07:43] -rw-------. 1 boincer umatlas 194596746 May 25 12:06 shared/HITS.pool.root.1
[2025-05-25 12:07:43]  *** Contents of shared directory: ***
[2025-05-25 12:07:43] total 411552
[2025-05-25 12:07:43] -rw-r--r--. 3 boincer umatlas 224197969 May 25 03:53 ATLAS.root_0
[2025-05-25 12:07:43] -rw-r--r--. 2 boincer umatlas    508877 May 25 03:53 input.tar.gz
[2025-05-25 12:07:43] -rw-r--r--. 2 boincer umatlas     15093 May 25 03:53 start_atlas.sh
[2025-05-25 12:07:43] -rw-------. 1 boincer umatlas 194596746 May 25 12:06 HITS.pool.root.1
[2025-05-25 12:07:43] -rw-------. 1 boincer umatlas   2099200 May 25 12:07 result.tar.gz
12:07:44 (367047): run_atlas exited; CPU time 51005.090344
12:07:44 (367047): called boinc_finish(0)

</stderr_txt>
]]>

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