Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:58:09 (1891271): wrapper (7.7.26015): starting
17:58:09 (1891271): wrapper: running run_atlas (--nthreads 6)
[2025-05-25 17:58:09] Arguments: --nthreads 6
[2025-05-25 17:58:09] Threads: 6
[2025-05-25 17:58:09] Checking for CVMFS
[2025-05-25 17:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 17:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 17:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 17:58:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 17:58:10] 2.11.5.0 1050432 1645 74068 146395 1 56 19295263 20971520 929 130560 0 2278883 99.994 391575 90 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-05-25 17:58:10] CVMFS is ok
[2025-05-25 17:58:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 17:58:10] Checking for apptainer binary...
[2025-05-25 17:58:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 17:58:10] Running /usr/bin/apptainer --version
[2025-05-25 17:58:10] apptainer version 1.3.6-1.el9
[2025-05-25 17:58:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 17:58:10] testio006
[2025-05-25 17:58:10] apptainer works
[2025-05-25 17:58:10] Set ATHENA_PROC_NUMBER=6
[2025-05-25 17:58:10] Set ATHENA_CORE_NUMBER=6
[2025-05-25 17:58:10] Starting ATLAS job with PandaID=6665679752
[2025-05-25 17:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 19:50:23]  *** The last 200 lines of the pilot log: ***
[2025-05-25 19:50:23] 2025-05-25 10:48:44,054 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6665679752/log.44871837._023726.job.log.tgz.1 /var/lib/boinc/slots/0/log.44871837._023726.job
[2025-05-25 19:50:23] 2025-05-25 10:48:44,066 | INFO     | adding to output.list: log.44871837._023726.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/49/log.44871837._023726.job.log.tg
[2025-05-25 19:50:23] 2025-05-25 10:48:44,066 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-25 19:50:23] 2025-05-25 10:48:44,066 | INFO     | summary of transferred files:
[2025-05-25 19:50:23] 2025-05-25 10:48:44,066 | INFO     |  -- lfn=log.44871837._023726.job.log.tgz.1, status_code=0, status=transferred
[2025-05-25 19:50:23] 2025-05-25 10:48:44,066 | INFO     | stage-out finished correctly
[2025-05-25 19:50:23] 2025-05-25 10:48:45,092 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,301 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-25 19:50:23] 2025-05-25 10:48:47,351 | INFO     | job 6665679752 has state=finished
[2025-05-25 19:50:23] 2025-05-25 10:48:47,351 | INFO     | preparing for final server update for job 6665679752 in state='finished'
[2025-05-25 19:50:23] 2025-05-25 10:48:47,351 | INFO     | this job has now completed (state=finished)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,351 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,352 | INFO     | log transfer has been attempted: DONE
[2025-05-25 19:50:23] 2025-05-25 10:48:47,352 | INFO     | job 6665679752 has finished - writing final server update
[2025-05-25 19:50:23] 2025-05-25 10:48:47,352 | INFO     | total number of processed events: 400 (read)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,353 | INFO     | executing command: lscpu
[2025-05-25 19:50:23] 2025-05-25 10:48:47,372 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-25 19:50:23] 2025-05-25 10:48:47,432 | WARNING  | process 1901548 can no longer be monitored (due to stat problems) - aborting
[2025-05-25 19:50:23] 2025-05-25 10:48:47,432 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6665679752/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,432 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6665679752/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 19:50:23] 2025-05-25 10:48:47,433 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2533183 B
[2025-05-25 19:50:23] 2025-05-25 10:48:47,433 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16024 B
[2025-05-25 19:50:23] 2025-05-25 10:48:47,433 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-05-25 19:50:23] 2025-05-25 10:48:53,457 | INFO     | PID=1894990 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-25 19:50:23] 2025-05-25 10:48:53,457 | INFO     | .. there are 2 such processes running
[2025-05-25 19:50:23] 2025-05-25 10:49:15,588 | INFO     | PID=1894990 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-25 19:50:23] 2025-05-25 10:49:15,588 | INFO     | .. there are 2 such processes running
[2025-05-25 19:50:23] 2025-05-25 10:49:37,733 | INFO     | PID=1894990 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-25 19:50:23] 2025-05-25 10:49:37,733 | INFO     | .. there are 2 such processes running
[2025-05-25 19:50:23] 2025-05-25 10:49:59,886 | INFO     | PID=1894990 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-25 19:50:23] 2025-05-25 10:49:59,886 | INFO     | .. there are 2 such processes running
[2025-05-25 19:50:23] 2025-05-25 10:50:03,939 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 19:50:23] 2025-05-25 10:50:03,939 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6665679752/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 19:50:23] 2025-05-25 10:50:03,943 | INFO     | extracted standard info from prmon json
[2025-05-25 19:50:23] 2025-05-25 10:50:03,943 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 19:50:23] 2025-05-25 10:50:03,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 19:50:23] 2025-05-25 10:50:03,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 19:50:23] 2025-05-25 10:50:03,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 19:50:23] 2025-05-25 10:50:03,945 | INFO     | fitting pss+swap vs Time
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | sum of square deviations: 296901284.9891298
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | sum of deviations: 12659872383.293476
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | mean x: 1748167096.5108695
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | mean y: 2418989.2065217393
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | -- intersect: -74539435375.99295
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | intersect: -74539435375.99295
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | chi2: 0.971239078686526
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | -- intersect: -74539435375.99295
[2025-05-25 19:50:23] 2025-05-25 10:50:03,946 | INFO     | current memory leak: 42.64 B/s (using 92 data points, chi2=0.97)
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | ..............................
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . Timing measurements:
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . get job = 0 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . initial setup = 4 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . payload setup = 3 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . stage-in = 0 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . payload execution = 6603 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . stage-out = 0 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | . log creation = 0 s
[2025-05-25 19:50:23] 2025-05-25 10:50:03,947 | INFO     | ..............................
[2025-05-25 19:50:23] 2025-05-25 10:50:03,974 | INFO     | sufficient remaining disk space (77203505152 B)
[2025-05-25 19:50:23] 2025-05-25 10:50:03,990 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | 
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | job summary report
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | --------------------------------------------------
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | PanDA job id: 6665679752
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | task id: 44871837
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | errors: (none)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 19:50:23] 2025-05-25 10:50:04,001 | INFO     | pilot state: finished 
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | transexitcode: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | exeerrorcode: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | exeerrordiag: 
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | exitcode: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | exitmsg: OK
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | cpuconsumptiontime: 30853 s
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | nevents: 400
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | neventsw: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | pid: 1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | pgrp: 1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:04,002 | INFO     | corecount: 6
[2025-05-25 19:50:23] 2025-05-25 10:50:04,003 | INFO     | event service: False
[2025-05-25 19:50:23] 2025-05-25 10:50:04,003 | INFO     | sizes: {0: 2393461, 1: 2393716, 3: 2393922, 11: 2393950, 6609: 2420537, 6611: 2429478, 6614: 2429662, 6691: 2429832}
[2025-05-25 19:50:23] 2025-05-25 10:50:04,003 | INFO     | --------------------------------------------------
[2025-05-25 19:50:23] 2025-05-25 10:50:04,003 | INFO     | 
[2025-05-25 19:50:23] 2025-05-25 10:50:04,003 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-05-25 19:50:23] 2025-05-25 10:50:04,007 | INFO     | size of work directory /var/lib/boinc/slots/0/PanDA_Pilot-6665679752: 2837797 B (within 2537553920 B limit)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,007 | INFO     | pfn file=/var/lib/boinc/slots/0/PanDA_Pilot-6665679752/HITS.44871837._023726.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,007 | INFO     | total size of present files: 0 B (workdir size: 2837797 B)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,007 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/0/PanDA_Pilot-6665679752/HITS.44871837._023726.pool.root.1 since it does not exist
[2025-05-25 19:50:23] 2025-05-25 10:50:04,015 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,015 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,017 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,018 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 19:50:23] 2025-05-25 10:50:04,018 | INFO     | job 6665679752 has completed (purged errors)
[2025-05-25 19:50:23] 2025-05-25 10:50:04,018 | INFO     | overall cleanup function is called
[2025-05-25 19:50:23] 2025-05-25 10:50:04,077 | INFO     | number of running child processes to parent process 1901548: 1
[2025-05-25 19:50:23] 2025-05-25 10:50:04,078 | INFO     | maximum number of monitored processes: 6
[2025-05-25 19:50:23] 2025-05-25 10:50:04,078 | INFO     | aborting job monitoring since job object (job id=6665679752) has expired
[2025-05-25 19:50:23] 2025-05-25 10:50:05,025 | INFO     | --- collectZombieJob: --- 10, [1901548]
[2025-05-25 19:50:23] 2025-05-25 10:50:05,025 | INFO     | zombie collector waiting for pid 1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:05,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 19:50:23] 2025-05-25 10:50:05,026 | INFO     | collected zombie processes
[2025-05-25 19:50:23] 2025-05-25 10:50:05,026 | INFO     | will attempt to kill all subprocesses of pid=1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:05,096 | INFO     | process IDs to be killed: [1901548] (in reverse order)
[2025-05-25 19:50:23] 2025-05-25 10:50:05,127 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 19:50:23] 2025-05-25 10:50:05,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 19:50:23] 2025-05-25 10:50:05,129 | INFO     | did not find any defunct processes belonging to 1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:05,131 | INFO     | did not find any defunct processes belonging to 1901548
[2025-05-25 19:50:23] 2025-05-25 10:50:05,132 | INFO     | ready for new job
[2025-05-25 19:50:23] 2025-05-25 10:50:05,132 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 19:50:23] 2025-05-25 10:50:05,133 | INFO     | **************************************
[2025-05-25 19:50:23] 2025-05-25 10:50:05,133 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 19:50:23] 2025-05-25 10:50:05,133 | INFO     | **************************************
[2025-05-25 19:50:23] 2025-05-25 10:50:05,133 | INFO     | 
[2025-05-25 19:50:23] 2025-05-25 10:50:05,133 | INFO     | architecture information:
[2025-05-25 19:50:23] 2025-05-25 10:50:05,134 | INFO     | executing command: cat /etc/os-release
[2025-05-25 19:50:23] 2025-05-25 10:50:05,143 | INFO     | cat /etc/os-release:
[2025-05-25 19:50:23] NAME="CentOS Linux"
[2025-05-25 19:50:23] VERSION="7 (Core)"
[2025-05-25 19:50:23] ID="centos"
[2025-05-25 19:50:23] ID_LIKE="rhel fedora"
[2025-05-25 19:50:23] VERSION_ID="7"
[2025-05-25 19:50:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 19:50:23] ANSI_COLOR="0;31"
[2025-05-25 19:50:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 19:50:23] HOME_URL="https://www.centos.org/"
[2025-05-25 19:50:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 19:50:23] 
[2025-05-25 19:50:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 19:50:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 19:50:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 19:50:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 19:50:23] 
[2025-05-25 19:50:23] 2025-05-25 10:50:05,143 | INFO     | **************************************
[2025-05-25 19:50:23] 2025-05-25 10:50:05,646 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | INFO     | sufficient remaining disk space (77206650880 B)
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | INFO     | update_server=False
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 19:50:23] 2025-05-25 10:50:05,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 19:50:23] 2025-05-25 10:50:05,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 19:50:23] 2025-05-25 10:50:05,659 | INFO     | aborting loop
[2025-05-25 19:50:23] 2025-05-25 10:50:05,901 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 19:50:23] 2025-05-25 10:50:05,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 19:50:23] 2025-05-25 10:50:05,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 19:50:23] 2025-05-25 10:50:06,125 | INFO     | all payload control threads have been joined
[2025-05-25 19:50:23] 2025-05-25 10:50:06,364 | INFO     | all job control threads have been joined
[2025-05-25 19:50:23] 2025-05-25 10:50:06,663 | INFO     | [job] retrieve thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:06,664 | INFO     | [job] queue monitor thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:06,664 | INFO     | [job] job monitor thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:06,755 | INFO     | all data control threads have been joined
[2025-05-25 19:50:23] 2025-05-25 10:50:07,011 | INFO     | [payload] validate_post thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,130 | INFO     | [payload] control thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,204 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,257 | INFO     | [job] validate thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,275 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,287 | INFO     | [data] copytool_in thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,369 | INFO     | [job] control thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,664 | INFO     | [data] copytool_out thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,747 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,761 | INFO     | [data] control thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:07,979 | INFO     | [payload] failed_post thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:09,664 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:16,444 | INFO     | job.realtimelogging is not enabled
[2025-05-25 19:50:23] 2025-05-25 10:50:17,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 19:50:23] 2025-05-25 10:50:18,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629755631424)>', '<ExcThread(monitor, started 140629032036096)>']
[2025-05-25 19:50:23] 2025-05-25 10:50:18,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 19:50:23] 2025-05-25 10:50:18,960 | INFO     | [monitor] control thread has ended
[2025-05-25 19:50:23] 2025-05-25 10:50:23,562 | INFO     | all workflow threads have been joined
[2025-05-25 19:50:23] 2025-05-25 10:50:23,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 19:50:23] 2025-05-25 10:50:23,562 | INFO     | traces error code: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:23,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 19:50:23] 2025-05-25 10:50:23,637 [wrapper] ==== pilot stdout END ====
[2025-05-25 19:50:23] 2025-05-25 10:50:23,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 19:50:23] 2025-05-25 10:50:23,641 [wrapper] pilotpid: 1894990
[2025-05-25 19:50:23] 2025-05-25 10:50:23,643 [wrapper] Pilot exit status: 0
[2025-05-25 19:50:23] 2025-05-25 10:50:23,650 [wrapper] pandaids: 6665679752
[2025-05-25 19:50:23] 2025-05-25 10:50:23,675 [wrapper] cleanup supervisor_pilot 1942934 1894991
[2025-05-25 19:50:23] 2025-05-25 10:50:23,677 [wrapper] Test setup, not cleaning
[2025-05-25 19:50:23] 2025-05-25 10:50:23,678 [wrapper] apfmon messages muted
[2025-05-25 19:50:23] 2025-05-25 10:50:23,680 [wrapper] ==== wrapper stdout END ====
[2025-05-25 19:50:23] 2025-05-25 10:50:23,682 [wrapper] ==== wrapper stderr END ====
[2025-05-25 19:50:23]  *** Error codes and diagnostics ***
[2025-05-25 19:50:23]     "exeErrorCode": 0,
[2025-05-25 19:50:23]     "exeErrorDiag": "",
[2025-05-25 19:50:23]     "pilotErrorCode": 0,
[2025-05-25 19:50:23]     "pilotErrorDiag": "",
[2025-05-25 19:50:23]  *** Listing of results directory ***
[2025-05-25 19:50:23] total 417472
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc    495897 May 25 04:53 pilot3.tar.gz
[2025-05-25 19:50:23] -rwx------. 1 boinc boinc     37140 May 25 05:35 runpilot2-wrapper.sh
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc      5111 May 25 05:35 queuedata.json
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc       100 May 25 17:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 19:50:23] -rwxr-xr-x. 1 boinc boinc      7986 May 25 17:58 run_atlas
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc       105 May 25 17:58 job.xml
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc 225759825 May 25 17:58 EVNT.44871834._000946.pool.root.1
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc     15093 May 25 17:58 start_atlas.sh
[2025-05-25 19:50:23] drwxrwx--x. 2 boinc boinc        68 May 25 17:58 shared
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc    508873 May 25 17:58 input.tar.gz
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc      9464 May 25 17:58 init_data.xml
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc         0 May 25 17:58 boinc_lockfile
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc      2557 May 25 17:58 pandaJob.out
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc    990811 May 25 17:58 agis_schedconf.cvmfs.json
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc   1596740 May 25 17:58 agis_ddmendpoints.agis.ALL.json
[2025-05-25 19:50:23] drwx------. 4 boinc boinc      4096 May 25 17:58 pilot3
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc 196236295 May 25 19:48 HITS.44871837._023726.pool.root.1
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc       529 May 25 19:48 boinc_task_state.xml
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc      1018 May 25 19:48 memory_monitor_summary.json
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc    275097 May 25 19:48 log.44871837._023726.job.log.tgz.1
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc        96 May 25 19:49 pilot_heartbeat.json
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc      8192 May 25 19:49 boinc_mmap_file
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc        27 May 25 19:49 wrapper_checkpoint.txt
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc      7669 May 25 19:50 heartbeat.json
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc      4425 May 25 19:50 pilotlog.txt
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc    560812 May 25 19:50 log.44871837._023726.job.log.1
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc       357 May 25 19:50 output.list
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc       620 May 25 19:50 runtime_log
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc    849920 May 25 19:50 result.tar.gz
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc      8617 May 25 19:50 runtime_log.err
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc       643 May 25 19:50 8VENDmKlAd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvJNKDmfXFZ7m.diag
[2025-05-25 19:50:23] -rw-r--r--. 1 boinc boinc     22522 May 25 19:50 stderr.txt
[2025-05-25 19:50:23] HITS file was successfully produced:
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc 196236295 May 25 19:48 shared/HITS.pool.root.1
[2025-05-25 19:50:23]  *** Contents of shared directory: ***
[2025-05-25 19:50:23] total 413464
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc 225759825 May 25 17:58 ATLAS.root_0
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc     15093 May 25 17:58 start_atlas.sh
[2025-05-25 19:50:23] -rw-r--r--. 2 boinc boinc    508873 May 25 17:58 input.tar.gz
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc 196236295 May 25 19:48 HITS.pool.root.1
[2025-05-25 19:50:23] -rw-------. 1 boinc boinc    849920 May 25 19:50 result.tar.gz
19:50:25 (1891271): run_atlas exited; CPU time 30909.271389
19:50:25 (1891271): called boinc_finish(0)

</stderr_txt>
]]>

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