Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:34 (26223): wrapper (7.7.26015): starting
08:29:34 (26223): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 08:29:34] Arguments: --nthreads 8
[2025-05-25 08:29:34] Threads: 8
[2025-05-25 08:29:34] Checking for CVMFS
[2025-05-25 08:29:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 08:29:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 08:29:35] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 08:29:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 08:29:36] 2.11.2.0 11919 18561 93956 146393 2 16 23795030 25165825 1774 130560 0 9961468 99.758 12407492 2184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-25 08:29:36] CVMFS is ok
[2025-05-25 08:29:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 08:29:36] Checking for apptainer binary...
[2025-05-25 08:29:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 08:29:36] Running /usr/bin/apptainer --version
[2025-05-25 08:29:36] apptainer version 1.3.2-1.el7
[2025-05-25 08:29:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 09:00:01] cg-vwn425.simple-grid.lan
[2025-05-25 09:00:01] apptainer works
[2025-05-25 09:00:01] Set ATHENA_PROC_NUMBER=8
[2025-05-25 09:00:01] Set ATHENA_CORE_NUMBER=8
[2025-05-25 09:00:01] Starting ATLAS job with PandaID=6665631360
[2025-05-25 09:00:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 14:29:38]  *** The last 200 lines of the pilot log: ***
[2025-05-25 14:29:38] 2025-05-25 12:17:26,278 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 14:29:38] 2025-05-25 12:17:26,278 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 14:29:38] 2025-05-25 12:17:26,278 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 14:29:38] 2025-05-25 12:17:26,278 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 14:29:38] 2025-05-25 12:17:26,285 | INFO     | fitting pss+swap vs Time
[2025-05-25 14:29:38] 2025-05-25 12:17:26,285 | INFO     | sum of square deviations: 8372156975.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,289 | INFO     | sum of deviations: 61379342591.000015
[2025-05-25 14:29:38] 2025-05-25 12:17:26,289 | INFO     | mean x: 1748166190.5
[2025-05-25 14:29:38] 2025-05-25 12:17:26,289 | INFO     | mean y: 2469287.08
[2025-05-25 14:29:38] 2025-05-25 12:17:26,290 | INFO     | -- intersect: -12813975965.09504
[2025-05-25 14:29:38] 2025-05-25 12:17:26,290 | INFO     | intersect: -12813975965.09504
[2025-05-25 14:29:38] 2025-05-25 12:17:26,290 | INFO     | chi2: 2.7262501466042623
[2025-05-25 14:29:38] 2025-05-25 12:17:26,291 | INFO     | sum of square deviations: 7960484140.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,294 | INFO     | sum of deviations: 79962400647.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,294 | INFO     | mean x: 1748166038.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,295 | INFO     | mean y: 2476071.2237288137
[2025-05-25 14:29:38] 2025-05-25 12:17:26,295 | INFO     | -- intersect: -17557706283.21717
[2025-05-25 14:29:38] 2025-05-25 12:17:26,295 | INFO     | intersect: -17557706283.21717
[2025-05-25 14:29:38] 2025-05-25 12:17:26,295 | INFO     | chi2: 1.9538243783113
[2025-05-25 14:29:38] 2025-05-25 12:17:26,296 | INFO     | current chi2=1.9538243783113 (change=28.332901485766936 %)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,296 | INFO     | sum of square deviations: 7562532492.5
[2025-05-25 14:29:38] 2025-05-25 12:17:26,307 | INFO     | sum of deviations: 78292024837.00002
[2025-05-25 14:29:38] 2025-05-25 12:17:26,307 | INFO     | mean x: 1748165885.5
[2025-05-25 14:29:38] 2025-05-25 12:17:26,307 | INFO     | mean y: 2475431.0551724136
[2025-05-25 14:29:38] 2025-05-25 12:17:26,307 | INFO     | -- intersect: -18095621610.1804
[2025-05-25 14:29:38] 2025-05-25 12:17:26,307 | INFO     | intersect: -18095621610.1804
[2025-05-25 14:29:38] 2025-05-25 12:17:26,308 | INFO     | chi2: 1.9541348185355758
[2025-05-25 14:29:38] 2025-05-25 12:17:26,308 | INFO     | current chi2=1.9541348185355758 (change=-0.015888849976580136 %)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,308 | INFO     | right removable region: 289
[2025-05-25 14:29:38] 2025-05-25 12:17:26,309 | INFO     | sum of square deviations: 7960484140.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,312 | INFO     | sum of deviations: 1679765601.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,312 | INFO     | mean x: 1748166343.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,312 | INFO     | mean y: 2491280.3966101697
[2025-05-25 14:29:38] 2025-05-25 12:17:26,313 | INFO     | -- intersect: -366394535.6107272
[2025-05-25 14:29:38] 2025-05-25 12:17:26,313 | INFO     | intersect: -366394535.6107272
[2025-05-25 14:29:38] 2025-05-25 12:17:26,313 | INFO     | chi2: 0.8105981028214392
[2025-05-25 14:29:38] 2025-05-25 12:17:26,313 | INFO     | current chi2=0.8105981028214392 (change=70.26692125698382 %)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,314 | INFO     | sum of square deviations: 7562532492.5
[2025-05-25 14:29:38] 2025-05-25 12:17:26,317 | INFO     | sum of deviations: -662673805.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,317 | INFO     | mean x: 1748166495.5
[2025-05-25 14:29:38] 2025-05-25 12:17:26,318 | INFO     | mean y: 2492167.206896552
[2025-05-25 14:29:38] 2025-05-25 12:17:26,323 | INFO     | -- intersect: 155676850.31343335
[2025-05-25 14:29:38] 2025-05-25 12:17:26,323 | INFO     | intersect: 155676850.31343335
[2025-05-25 14:29:38] 2025-05-25 12:17:26,324 | INFO     | chi2: 0.7959733463169401
[2025-05-25 14:29:38] 2025-05-25 12:17:26,324 | INFO     | current chi2=0.7959733463169401 (change=1.8041932806892726 %)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,324 | INFO     | left removable region: 20
[2025-05-25 14:29:38] 2025-05-25 12:17:26,325 | INFO     | sum of square deviations: 6035722470.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,327 | INFO     | sum of deviations: 12097663532.999998
[2025-05-25 14:29:38] 2025-05-25 12:17:26,327 | INFO     | mean x: 1748166465.0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,328 | INFO     | mean y: 2501697.282527881
[2025-05-25 14:29:38] 2025-05-25 12:17:26,328 | INFO     | -- intersect: -3501425098.28533
[2025-05-25 14:29:38] 2025-05-25 12:17:26,328 | INFO     | intersect: -3501425098.28533
[2025-05-25 14:29:38] 2025-05-25 12:17:26,328 | INFO     | chi2: 0.002107655879225877
[2025-05-25 14:29:38] 2025-05-25 12:17:26,329 | INFO     | -- intersect: -3501425098.28533
[2025-05-25 14:29:38] 2025-05-25 12:17:26,329 | INFO     | current memory leak: 2.00 B/s (using 269 data points, chi2=0.00)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | ..............................
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . Timing measurements:
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . get job = 0 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . initial setup = 3 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . payload setup = 152 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . stage-in = 0 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . payload execution = 18420 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,330 | INFO     | . stage-out = 1 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,331 | INFO     | . log creation = 0 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,331 | INFO     | ..............................
[2025-05-25 14:29:38] 2025-05-25 12:17:26,559 | INFO     | 
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | job summary report
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | --------------------------------------------------
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | PanDA job id: 6665631360
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | task id: 44871837
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | errors: (none)
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | pilot state: finished 
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | transexitcode: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | exeerrorcode: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,560 | INFO     | exeerrordiag: 
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | exitcode: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | exitmsg: OK
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | cpuconsumptiontime: 70319 s
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | nevents: 400
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | neventsw: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | pid: 24380
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | pgrp: 24380
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | corecount: 8
[2025-05-25 14:29:38] 2025-05-25 12:17:26,561 | INFO     | event service: False
[2025-05-25 14:29:38] 2025-05-25 12:17:26,566 | INFO     | sizes: {0: 2393518, 1: 2393717, 12: 2393717, 22: 2393745, 33: 2393773, 44: 2393829, 55: 2393985, 65: 2394013, 76: 2394041, 80: 2394303, 87: 2394331, 18577: 2426207
[2025-05-25 14:29:38] 2025-05-25 12:17:26,566 | INFO     | --------------------------------------------------
[2025-05-25 14:29:38] 2025-05-25 12:17:26,566 | INFO     | 
[2025-05-25 14:29:38] 2025-05-25 12:17:26,566 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-05-25 14:29:38] 2025-05-25 12:17:27,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | job 6665631360 has completed (purged errors)
[2025-05-25 14:29:38] 2025-05-25 12:17:27,218 | INFO     | overall cleanup function is called
[2025-05-25 14:29:38] 2025-05-25 12:17:28,227 | INFO     | --- collectZombieJob: --- 10, [24380]
[2025-05-25 14:29:38] 2025-05-25 12:17:28,227 | INFO     | zombie collector waiting for pid 24380
[2025-05-25 14:29:38] 2025-05-25 12:17:28,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 14:29:38] 2025-05-25 12:17:28,227 | INFO     | collected zombie processes
[2025-05-25 14:29:38] 2025-05-25 12:17:28,228 | INFO     | will attempt to kill all subprocesses of pid=24380
[2025-05-25 14:29:38] 2025-05-25 12:17:28,348 | INFO     | process IDs to be killed: [24380] (in reverse order)
[2025-05-25 14:29:38] 2025-05-25 12:17:28,995 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 14:29:38] 2025-05-25 12:17:28,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 14:29:38] 2025-05-25 12:17:28,999 | INFO     | did not find any defunct processes belonging to 24380
[2025-05-25 14:29:38] 2025-05-25 12:17:29,007 | INFO     | did not find any defunct processes belonging to 24380
[2025-05-25 14:29:38] 2025-05-25 12:17:29,008 | INFO     | ready for new job
[2025-05-25 14:29:38] 2025-05-25 12:17:29,008 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 14:29:38] 2025-05-25 12:17:29,010 | INFO     | **************************************
[2025-05-25 14:29:38] 2025-05-25 12:17:29,010 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 14:29:38] 2025-05-25 12:17:29,010 | INFO     | **************************************
[2025-05-25 14:29:38] 2025-05-25 12:17:29,010 | INFO     | 
[2025-05-25 14:29:38] 2025-05-25 12:17:29,011 | INFO     | pilot is running in a VM
[2025-05-25 14:29:38] 2025-05-25 12:17:29,011 | INFO     | architecture information:
[2025-05-25 14:29:38] 2025-05-25 12:17:29,031 | INFO     | executing command: cat /etc/os-release
[2025-05-25 14:29:38] 2025-05-25 12:17:29,343 | INFO     | cat /etc/os-release:
[2025-05-25 14:29:38] NAME="CentOS Linux"
[2025-05-25 14:29:38] VERSION="7 (Core)"
[2025-05-25 14:29:38] ID="centos"
[2025-05-25 14:29:38] ID_LIKE="rhel fedora"
[2025-05-25 14:29:38] VERSION_ID="7"
[2025-05-25 14:29:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 14:29:38] ANSI_COLOR="0;31"
[2025-05-25 14:29:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 14:29:38] HOME_URL="https://www.centos.org/"
[2025-05-25 14:29:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 14:29:38] 
[2025-05-25 14:29:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 14:29:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 14:29:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 14:29:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 14:29:38] 
[2025-05-25 14:29:38] 2025-05-25 12:17:29,344 | INFO     | **************************************
[2025-05-25 14:29:38] 2025-05-25 12:17:29,847 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-05-25 14:29:38] 2025-05-25 12:17:30,057 | INFO     | sufficient remaining disk space (495507734528 B)
[2025-05-25 14:29:38] 2025-05-25 12:17:30,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 14:29:38] 2025-05-25 12:17:30,058 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 14:29:38] 2025-05-25 12:17:30,058 | INFO     | update_server=False
[2025-05-25 14:29:38] 2025-05-25 12:17:30,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 14:29:38] 2025-05-25 12:17:30,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 14:29:38] 2025-05-25 12:17:30,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 14:29:38] 2025-05-25 12:17:30,061 | INFO     | aborting loop
[2025-05-25 14:29:38] 2025-05-25 12:17:30,066 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 14:29:38] 2025-05-25 12:17:30,066 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 14:29:38] 2025-05-25 12:17:30,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 14:29:38] 2025-05-25 12:17:30,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 14:29:38] 2025-05-25 12:17:30,404 | INFO     | all data control threads have been joined
[2025-05-25 14:29:38] 2025-05-25 12:17:30,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 14:29:38] 2025-05-25 12:17:30,902 | INFO     | all payload control threads have been joined
[2025-05-25 14:29:38] 2025-05-25 12:17:31,064 | INFO     | [job] retrieve thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,067 | INFO     | [job] job monitor thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,094 | INFO     | [payload] failed_post thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,228 | INFO     | [job] validate thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,410 | INFO     | [data] control thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,414 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,432 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,515 | INFO     | all job control threads have been joined
[2025-05-25 14:29:38] 2025-05-25 12:17:31,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 14:29:38] 2025-05-25 12:17:31,868 | INFO     | [data] copytool_in thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,908 | INFO     | [payload] control thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:31,989 | INFO     | [payload] validate_post thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:32,066 | INFO     | [data] copytool_out thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:32,185 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:32,521 | INFO     | [job] control thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:32,582 | INFO     | [job] queue monitor thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:34,624 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:40,587 | INFO     | job.realtimelogging is not enabled
[2025-05-25 14:29:38] 2025-05-25 12:17:41,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 14:29:38] 2025-05-25 12:17:42,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298905737024)>', '<ExcThread(monitor, started 140298319554304)>']
[2025-05-25 14:29:38] 2025-05-25 12:17:43,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 14:29:38] 2025-05-25 12:17:43,142 | INFO     | [monitor] control thread has ended
[2025-05-25 14:29:38] 2025-05-25 12:17:47,780 | INFO     | all workflow threads have been joined
[2025-05-25 14:29:38] 2025-05-25 12:17:47,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 14:29:38] 2025-05-25 12:17:47,780 | INFO     | traces error code: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:47,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 14:29:38] 2025-05-25 12:17:48,075 [wrapper] ==== pilot stdout END ====
[2025-05-25 14:29:38] 2025-05-25 12:17:48,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 14:29:38] 2025-05-25 12:17:48,209 [wrapper] pilotpid: 17788
[2025-05-25 14:29:38] 2025-05-25 12:17:48,270 [wrapper] Pilot exit status: 0
[2025-05-25 14:29:38] 2025-05-25 12:17:48,651 [wrapper] pandaids: 6665631360
[2025-05-25 14:29:38] 2025-05-25 12:17:49,387 [wrapper] cleanup supervisor_pilot 24761 17789
[2025-05-25 14:29:38] 2025-05-25 12:17:49,439 [wrapper] Test setup, not cleaning
[2025-05-25 14:29:38] 2025-05-25 12:17:49,496 [wrapper] apfmon messages muted
[2025-05-25 14:29:38] 2025-05-25 12:17:49,606 [wrapper] ==== wrapper stdout END ====
[2025-05-25 14:29:38] 2025-05-25 12:17:49,710 [wrapper] ==== wrapper stderr END ====
[2025-05-25 14:29:38]  *** Error codes and diagnostics ***
[2025-05-25 14:29:38]     "exeErrorCode": 0,
[2025-05-25 14:29:38]     "exeErrorDiag": "",
[2025-05-25 14:29:38]     "pilotErrorCode": 0,
[2025-05-25 14:29:38]     "pilotErrorDiag": "",
[2025-05-25 14:29:38]  *** Listing of results directory ***
[2025-05-25 14:29:38] total 413372
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc      5111 May 24 17:15 queuedata.json
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc    495897 May 24 17:15 pilot3.tar.gz
[2025-05-25 14:29:38] -rwx------. 1 boinc boinc     37140 May 24 17:16 runpilot2-wrapper.sh
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc       100 May 25 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 14:29:38] -rwxr-xr-x. 1 boinc boinc      7986 May 25 08:29 run_atlas
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc       105 May 25 08:29 job.xml
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc 222618463 May 25 08:29 EVNT.44871834._000778.pool.root.1
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc     15093 May 25 08:29 start_atlas.sh
[2025-05-25 14:29:38] drwxrwx--x. 2 boinc boinc        68 May 25 08:29 shared
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc    508882 May 25 08:29 input.tar.gz
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc      6373 May 25 08:29 init_data.xml
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc         0 May 25 08:29 boinc_lockfile
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc      2557 May 25 09:00 pandaJob.out
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc    990811 May 25 09:03 agis_schedconf.cvmfs.json
[2025-05-25 14:29:38] drwx------. 4 boinc boinc      4096 May 25 09:03 pilot3
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc 192768852 May 25 14:14 HITS.44871837._019511.pool.root.1
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc       531 May 25 14:14 boinc_task_state.xml
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc      1019 May 25 14:15 memory_monitor_summary.json
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc   1596740 May 25 14:15 agis_ddmendpoints.agis.ALL.json
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc    430389 May 25 14:15 log.44871837._019511.job.log.tgz.1
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc        95 May 25 14:16 pilot_heartbeat.json
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc      7692 May 25 14:17 heartbeat.json
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc      4612 May 25 14:17 pilotlog.txt
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc   1610261 May 25 14:17 log.44871837._019511.job.log.1
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc       357 May 25 14:17 output.list
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc       620 May 25 14:17 runtime_log
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc   2058240 May 25 14:17 result.tar.gz
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc       657 May 25 14:17 VGQMDmVn5c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOwMKDmzE4x4n.diag
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc      8673 May 25 14:17 runtime_log.err
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc      8192 May 25 14:29 boinc_mmap_file
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc        28 May 25 14:29 wrapper_checkpoint.txt
[2025-05-25 14:29:38] -rw-r--r--. 1 boinc boinc     20493 May 25 14:29 stderr.txt
[2025-05-25 14:29:38] HITS file was successfully produced:
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc 192768852 May 25 14:14 shared/HITS.pool.root.1
[2025-05-25 14:29:38]  *** Contents of shared directory: ***
[2025-05-25 14:29:38] total 408184
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc 222618463 May 25 08:29 ATLAS.root_0
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc     15093 May 25 08:29 start_atlas.sh
[2025-05-25 14:29:38] -rw-r--r--. 2 boinc boinc    508882 May 25 08:29 input.tar.gz
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc 192768852 May 25 14:14 HITS.pool.root.1
[2025-05-25 14:29:38] -rw-------. 1 boinc boinc   2058240 May 25 14:17 result.tar.gz
14:29:40 (26223): run_atlas exited; CPU time 70572.238768
14:29:40 (26223): called boinc_finish(0)

</stderr_txt>
]]>

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