Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:51 (1753227): wrapper (7.7.26015): starting
20:40:51 (1753227): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 20:40:51] Arguments: --nthreads 8
[2025-05-24 20:40:51] Threads: 8
[2025-05-24 20:40:51] Checking for CVMFS
[2025-05-24 20:40:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 20:40:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 20:40:52] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 20:40:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 20:40:53] 2.12.6.0 7828 22202 485264 146384 2 458 25029313 32935936 31747 16776704 0 188446153 99.644 168987792 21542 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 20:40:53] CVMFS is ok
[2025-05-24 20:40:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 20:40:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 20:40:53] Further information can be found at the LHC@home message board.
[2025-05-24 20:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 20:40:53] Checking for apptainer binary...
[2025-05-24 20:40:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 20:40:53] Running /usr/bin/apptainer --version
[2025-05-24 20:40:53] apptainer version 1.4.1-1.el9
[2025-05-24 20:40:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 20:40:54] c7-3-29.aglt2.org
[2025-05-24 20:40:54] apptainer works
[2025-05-24 20:40:54] Set ATHENA_PROC_NUMBER=8
[2025-05-24 20:40:54] Set ATHENA_CORE_NUMBER=8
[2025-05-24 20:40:54] Starting ATLAS job with PandaID=6665677384
[2025-05-24 20:40:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 23:32:01]  *** The last 200 lines of the pilot log: ***
[2025-05-24 23:32:01] 2025-05-25 03:31:39,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 23:32:01] 2025-05-25 03:31:39,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 23:32:01] 2025-05-25 03:31:39,515 | INFO     | fitting pss+swap vs Time
[2025-05-24 23:32:01] 2025-05-25 03:31:39,515 | INFO     | sum of square deviations: 1367795971.7256165
[2025-05-24 23:32:01] 2025-05-25 03:31:39,516 | INFO     | sum of deviations: 23901362084.304874
[2025-05-24 23:32:01] 2025-05-25 03:31:39,516 | INFO     | mean x: 1748138881.737805
[2025-05-24 23:32:01] 2025-05-25 03:31:39,516 | INFO     | mean y: 2086855.4024390243
[2025-05-24 23:32:01] 2025-05-25 03:31:39,516 | INFO     | -- intersect: -30545524959.35794
[2025-05-24 23:32:01] 2025-05-25 03:31:39,516 | INFO     | intersect: -30545524959.35794
[2025-05-24 23:32:01] 2025-05-25 03:31:39,517 | INFO     | chi2: 4.651211305232442
[2025-05-24 23:32:01] 2025-05-25 03:31:39,517 | INFO     | sum of square deviations: 1246484661.433966
[2025-05-24 23:32:01] 2025-05-25 03:31:39,517 | INFO     | sum of deviations: 32559187109.32077
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | mean x: 1748138729.2452831
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | mean y: 2097454.0943396227
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | -- intersect: -45660699481.62448
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | intersect: -45660699481.62448
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | chi2: 4.028319149079341
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | current chi2=4.028319149079341 (change=13.392041669927371 %)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,541 | INFO     | right removable region: 158
[2025-05-24 23:32:01] 2025-05-25 03:31:39,542 | INFO     | sum of square deviations: 1246460871.433966
[2025-05-24 23:32:01] 2025-05-25 03:31:39,542 | INFO     | sum of deviations: -17306301932.396225
[2025-05-24 23:32:01] 2025-05-25 03:31:39,542 | INFO     | mean x: 1748139034.2452831
[2025-05-24 23:32:01] 2025-05-25 03:31:39,542 | INFO     | mean y: 2138462.4716981133
[2025-05-24 23:32:01] 2025-05-25 03:31:39,543 | INFO     | -- intersect: 24273916774.81576
[2025-05-24 23:32:01] 2025-05-25 03:31:39,543 | INFO     | intersect: 24273916774.81576
[2025-05-24 23:32:01] 2025-05-25 03:31:39,543 | INFO     | chi2: 1.0622038314044175
[2025-05-24 23:32:01] 2025-05-25 03:31:39,543 | INFO     | current chi2=1.0622038314044175 (change=77.16285583049135 %)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,543 | INFO     | sum of square deviations: 1132530713.1233716
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | sum of deviations: -23764325153.298695
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | mean x: 1748139186.7467532
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | mean y: 2146972.4025974027
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | -- intersect: 36684020201.69619
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | intersect: 36684020201.69619
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | chi2: 0.8810157951314064
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | current chi2=0.8810157951314064 (change=17.057746443396763 %)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | left removable region: 20
[2025-05-24 23:32:01] 2025-05-25 03:31:39,544 | INFO     | sum of square deviations: 814950986.5797094
[2025-05-24 23:32:01] 2025-05-25 03:31:39,553 | INFO     | sum of deviations: -2971532024.652173
[2025-05-24 23:32:01] 2025-05-25 03:31:39,553 | INFO     | mean x: 1748139308.768116
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | mean y: 2142188.7608695654
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | -- intersect: 6376331588.002351
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | intersect: 6376331588.002351
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | chi2: 0.08419612659064171
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | -- intersect: 6376331588.002351
[2025-05-24 23:32:01] 2025-05-25 03:31:39,554 | INFO     | current memory leak: -3.65 B/s (using 138 data points, chi2=0.08)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | ..............................
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . Timing measurements:
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . get job = 0 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . initial setup = 8 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . payload setup = 64 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . stage-in = 0 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . payload execution = 9999 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . stage-out = 0 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | . log creation = 0 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,555 | INFO     | ..............................
[2025-05-24 23:32:01] 2025-05-25 03:31:39,631 | INFO     | sufficient remaining disk space (74086088704 B)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,631 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,632 | INFO     | size of work directory /tmp/boinchome/slots/5/PanDA_Pilot-6665677384: 3753700 B (within 2537553920 B limit)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,632 | INFO     | pfn file=/tmp/boinchome/slots/5/PanDA_Pilot-6665677384/HITS.44871837._022136.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,632 | INFO     | total size of present files: 0 B (workdir size: 3753700 B)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,632 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/5/PanDA_Pilot-6665677384/HITS.44871837._022136.pool.root.1 since it does not exist
[2025-05-24 23:32:01] 2025-05-25 03:31:39,788 | INFO     | 
[2025-05-24 23:32:01] 2025-05-25 03:31:39,788 | INFO     | job summary report
[2025-05-24 23:32:01] 2025-05-25 03:31:39,790 | INFO     | --------------------------------------------------
[2025-05-24 23:32:01] 2025-05-25 03:31:39,790 | INFO     | PanDA job id: 6665677384
[2025-05-24 23:32:01] 2025-05-25 03:31:39,790 | INFO     | task id: 44871837
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | errors: (none)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | pilot state: finished 
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | transexitcode: 0
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | exeerrorcode: 0
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | exeerrordiag: 
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | exitcode: 0
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | exitmsg: OK
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | cpuconsumptiontime: 36868 s
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | nevents: 400
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | neventsw: 0
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | pid: 1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | pgrp: 1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | corecount: 8
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | event service: False
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | sizes: {0: 2392911, 1: 2393596, 2: 2393795, 13: 2393795, 24: 2393851, 35: 2393879, 36: 2394241, 46: 2394269, 10068: 2422390, 10070: 2431387, 10089: 2431529}
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | --------------------------------------------------
[2025-05-24 23:32:01] 2025-05-25 03:31:39,791 | INFO     | 
[2025-05-24 23:32:01] 2025-05-25 03:31:39,792 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-24 23:32:01] 2025-05-25 03:31:39,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 23:32:01] 2025-05-25 03:31:39,858 | INFO     | job 6665677384 has completed (purged errors)
[2025-05-24 23:32:01] 2025-05-25 03:31:39,858 | INFO     | overall cleanup function is called
[2025-05-24 23:32:01] 2025-05-25 03:31:40,319 | INFO     | number of running child processes to parent process 1785399: 1
[2025-05-24 23:32:01] 2025-05-25 03:31:40,320 | INFO     | maximum number of monitored processes: 7
[2025-05-24 23:32:01] 2025-05-25 03:31:40,320 | INFO     | aborting job monitoring since job object (job id=6665677384) has expired
[2025-05-24 23:32:01] 2025-05-25 03:31:40,874 | INFO     | --- collectZombieJob: --- 10, [1785399]
[2025-05-24 23:32:01] 2025-05-25 03:31:40,876 | INFO     | zombie collector waiting for pid 1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:40,876 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 23:32:01] 2025-05-25 03:31:40,876 | INFO     | collected zombie processes
[2025-05-24 23:32:01] 2025-05-25 03:31:40,876 | INFO     | will attempt to kill all subprocesses of pid=1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:41,545 | INFO     | process IDs to be killed: [1785399] (in reverse order)
[2025-05-24 23:32:01] 2025-05-25 03:31:41,875 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 23:32:01] 2025-05-25 03:31:41,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 23:32:01] 2025-05-25 03:31:41,901 | INFO     | did not find any defunct processes belonging to 1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:41,928 | INFO     | did not find any defunct processes belonging to 1785399
[2025-05-24 23:32:01] 2025-05-25 03:31:41,928 | INFO     | ready for new job
[2025-05-24 23:32:01] 2025-05-25 03:31:41,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 23:32:01] 2025-05-25 03:31:41,930 | INFO     | **************************************
[2025-05-24 23:32:01] 2025-05-25 03:31:41,930 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 23:32:01] 2025-05-25 03:31:41,930 | INFO     | **************************************
[2025-05-24 23:32:01] 2025-05-25 03:31:41,930 | INFO     | 
[2025-05-24 23:32:01] 2025-05-25 03:31:41,957 | INFO     | architecture information:
[2025-05-24 23:32:01] 2025-05-25 03:31:41,969 | INFO     | executing command: cat /etc/os-release
[2025-05-24 23:32:01] 2025-05-25 03:31:42,046 | INFO     | cat /etc/os-release:
[2025-05-24 23:32:01] NAME="CentOS Linux"
[2025-05-24 23:32:01] VERSION="7 (Core)"
[2025-05-24 23:32:01] ID="centos"
[2025-05-24 23:32:01] ID_LIKE="rhel fedora"
[2025-05-24 23:32:01] VERSION_ID="7"
[2025-05-24 23:32:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 23:32:01] ANSI_COLOR="0;31"
[2025-05-24 23:32:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 23:32:01] HOME_URL="https://www.centos.org/"
[2025-05-24 23:32:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 23:32:01] 
[2025-05-24 23:32:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 23:32:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 23:32:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 23:32:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 23:32:01] 
[2025-05-24 23:32:01] 2025-05-25 03:31:42,046 | INFO     | **************************************
[2025-05-24 23:32:01] 2025-05-25 03:31:42,550 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-24 23:32:01] 2025-05-25 03:31:42,635 | INFO     | sufficient remaining disk space (74090283008 B)
[2025-05-24 23:32:01] 2025-05-25 03:31:42,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 23:32:01] 2025-05-25 03:31:42,636 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 23:32:01] 2025-05-25 03:31:42,636 | INFO     | update_server=False
[2025-05-24 23:32:01] 2025-05-25 03:31:42,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 23:32:01] 2025-05-25 03:31:42,637 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 23:32:01] 2025-05-25 03:31:42,637 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 23:32:01] 2025-05-25 03:31:42,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 23:32:01] 2025-05-25 03:31:42,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 23:32:01] 2025-05-25 03:31:42,787 | INFO     | all data control threads have been joined
[2025-05-24 23:32:01] 2025-05-25 03:31:42,828 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-24 23:32:01] 2025-05-25 03:31:42,828 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-24 23:32:01] 2025-05-25 03:31:42,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 23:32:01] 2025-05-25 03:31:42,828 | INFO     | will abort loop
[2025-05-24 23:32:01] 2025-05-25 03:31:43,642 | INFO     | [job] retrieve thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:43,659 | INFO     | all payload control threads have been joined
[2025-05-24 23:32:01] 2025-05-25 03:31:43,693 | INFO     | [payload] failed_post thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:43,793 | INFO     | [data] control thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:43,834 | INFO     | [job] job monitor thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,007 | INFO     | all job control threads have been joined
[2025-05-24 23:32:01] 2025-05-25 03:31:44,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 23:32:01] 2025-05-25 03:31:44,445 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,463 | INFO     | [payload] validate_post thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,465 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 23:32:01] 2025-05-25 03:31:44,664 | INFO     | [payload] control thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,853 | INFO     | [data] copytool_in thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:44,886 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:45,013 | INFO     | [job] control thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:45,020 | INFO     | [job] validate thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:45,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 23:32:01] 2025-05-25 03:31:45,670 | INFO     | [job] queue monitor thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:46,023 | INFO     | [data] copytool_out thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:49,212 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:53,055 | INFO     | job.realtimelogging is not enabled
[2025-05-24 23:32:01] 2025-05-25 03:31:54,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 23:32:01] 2025-05-25 03:31:56,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003565446976)>', '<ExcThread(monitor, started 140002688222976)>']
[2025-05-24 23:32:01] 2025-05-25 03:31:56,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 23:32:01] 2025-05-25 03:31:56,721 | INFO     | [monitor] control thread has ended
[2025-05-24 23:32:01] 2025-05-25 03:32:01,183 | INFO     | all workflow threads have been joined
[2025-05-24 23:32:01] 2025-05-25 03:32:01,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 23:32:01] 2025-05-25 03:32:01,183 | INFO     | traces error code: 0
[2025-05-24 23:32:01] 2025-05-25 03:32:01,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 23:32:01] 2025-05-25 03:32:01,344 [wrapper] ==== pilot stdout END ====
[2025-05-24 23:32:01] 2025-05-25 03:32:01,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 23:32:01] 2025-05-25 03:32:01,356 [wrapper] pilotpid: 1762082
[2025-05-24 23:32:01] 2025-05-25 03:32:01,390 [wrapper] Pilot exit status: 0
[2025-05-24 23:32:01] 2025-05-25 03:32:01,455 [wrapper] pandaids: 6665677384
[2025-05-24 23:32:01] 2025-05-25 03:32:01,662 [wrapper] cleanup supervisor_pilot 3358150 1762083
[2025-05-24 23:32:01] 2025-05-25 03:32:01,676 [wrapper] Test setup, not cleaning
[2025-05-24 23:32:01] 2025-05-25 03:32:01,681 [wrapper] apfmon messages muted
[2025-05-24 23:32:01] 2025-05-25 03:32:01,683 [wrapper] ==== wrapper stdout END ====
[2025-05-24 23:32:01] 2025-05-25 03:32:01,686 [wrapper] ==== wrapper stderr END ====
[2025-05-24 23:32:01]  *** Error codes and diagnostics ***
[2025-05-24 23:32:01]     "exeErrorCode": 0,
[2025-05-24 23:32:01]     "exeErrorDiag": "",
[2025-05-24 23:32:01]     "pilotErrorCode": 0,
[2025-05-24 23:32:01]     "pilotErrorDiag": "",
[2025-05-24 23:32:01]  *** Listing of results directory ***
[2025-05-24 23:32:01] total 409092
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas    495897 May 24 14:37 pilot3.tar.gz
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas      5111 May 24 14:44 queuedata.json
[2025-05-24 23:32:01] -rwx------. 1 boincer umatlas     37140 May 24 14:45 runpilot2-wrapper.sh
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas       100 May 24 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 23:32:01] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 20:40 run_atlas
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas       105 May 24 20:40 job.xml
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas 222968416 May 24 20:40 EVNT.44871834._000882.pool.root.1
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas    508876 May 24 20:40 input.tar.gz
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas     15093 May 24 20:40 start_atlas.sh
[2025-05-24 23:32:01] drwxrwx--x. 2 boincer umatlas      4096 May 24 20:40 shared
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas         0 May 24 20:40 boinc_lockfile
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas      2558 May 24 20:40 pandaJob.out
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas    990811 May 24 20:42 agis_schedconf.cvmfs.json
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas   1596740 May 24 20:42 agis_ddmendpoints.agis.ALL.json
[2025-05-24 23:32:01] drwx------. 4 boincer umatlas      4096 May 24 20:42 pilot3
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas      6933 May 24 23:29 init_data.xml
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas 189787317 May 24 23:30 HITS.44871837._022136.pool.root.1
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas       530 May 24 23:30 boinc_task_state.xml
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas        95 May 24 23:30 pilot_heartbeat.json
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas      1033 May 24 23:31 memory_monitor_summary.json
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas    355134 May 24 23:31 log.44871837._022136.job.log.tgz.1
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas      7702 May 24 23:31 heartbeat.json
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas        27 May 24 23:31 wrapper_checkpoint.txt
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas      4734 May 24 23:32 pilotlog.txt
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas      8192 May 24 23:32 boinc_mmap_file
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas    808405 May 24 23:32 log.44871837._022136.job.log.1
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas       357 May 24 23:32 output.list
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas       620 May 24 23:32 runtime_log
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas   1177600 May 24 23:32 result.tar.gz
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas       653 May 24 23:32 tuILDmV38c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtHSKDmxsVnhn.diag
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas      8655 May 24 23:32 runtime_log.err
[2025-05-24 23:32:01] -rw-r--r--. 1 boincer umatlas     21382 May 24 23:32 stderr.txt
[2025-05-24 23:32:01] HITS file was successfully produced:
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas 189787317 May 24 23:30 shared/HITS.pool.root.1
[2025-05-24 23:32:01]  *** Contents of shared directory: ***
[2025-05-24 23:32:01] total 404760
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas 222968416 May 24 20:40 ATLAS.root_0
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas    508876 May 24 20:40 input.tar.gz
[2025-05-24 23:32:01] -rw-r--r--. 2 boincer umatlas     15093 May 24 20:40 start_atlas.sh
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas 189787317 May 24 23:30 HITS.pool.root.1
[2025-05-24 23:32:01] -rw-------. 1 boincer umatlas   1177600 May 24 23:32 result.tar.gz
23:32:03 (1753227): run_atlas exited; CPU time 37270.883206
23:32:03 (1753227): called boinc_finish(0)

</stderr_txt>
]]>

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