Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:32:41 (1784686): wrapper (7.7.26015): starting
14:32:41 (1784686): wrapper: running run_atlas (--nthreads 6)
[2025-05-25 14:32:41] Arguments: --nthreads 6
[2025-05-25 14:32:41] Threads: 6
[2025-05-25 14:32:41] Checking for CVMFS
[2025-05-25 14:32:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 14:32:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 14:32:41] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 14:32:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 14:32:42] 2.11.5.0 1050432 1439 73536 146391 3 56 19237766 20971520 929 130560 0 1992619 99.993 387605 99 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-05-25 14:32:42] CVMFS is ok
[2025-05-25 14:32:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 14:32:42] Checking for apptainer binary...
[2025-05-25 14:32:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 14:32:42] Running /usr/bin/apptainer --version
[2025-05-25 14:32:42] apptainer version 1.3.6-1.el9
[2025-05-25 14:32:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 14:32:42] testio006
[2025-05-25 14:32:42] apptainer works
[2025-05-25 14:32:42] Set ATHENA_PROC_NUMBER=6
[2025-05-25 14:32:42] Set ATHENA_CORE_NUMBER=6
[2025-05-25 14:32:42] Starting ATLAS job with PandaID=6665675463
[2025-05-25 14:32:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 16:16:25]  *** The last 200 lines of the pilot log: ***
[2025-05-25 16:16:25] 2025-05-25 07:16:11,820 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6665675463/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,821 | INFO     | extracted standard info from prmon json
[2025-05-25 16:16:25] 2025-05-25 07:16:11,821 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 16:16:25] 2025-05-25 07:16:11,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 16:16:25] 2025-05-25 07:16:11,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 16:16:25] 2025-05-25 07:16:11,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | fitting pss+swap vs Time
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | sum of square deviations: 319447850.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | sum of deviations: 17802954066.000008
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | mean x: 1748154241.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | mean y: 2394772.6534653464
[2025-05-25 16:16:25] 2025-05-25 07:16:11,823 | INFO     | -- intersect: -97422927240.95879
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | intersect: -97422927240.95879
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | chi2: 4.22225788324095
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | sum of square deviations: 274312120.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | sum of deviations: 23254864567.999996
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | mean x: 1748154088.5
[2025-05-25 16:16:25] 2025-05-25 07:16:11,824 | INFO     | mean y: 2412368.1666666665
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | -- intersect: -148197698410.9815
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | intersect: -148197698410.9815
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | chi2: 3.5678322303575216
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | current chi2=3.5678322303575216 (change=15.4994240281008 %)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | right removable region: 95
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | sum of square deviations: 274312120.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,825 | INFO     | sum of deviations: -4048242887.500001
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | mean x: 1748154393.5
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | mean y: 2468124.3020833335
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | -- intersect: 25801377737.695225
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | intersect: 25801377737.695225
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | chi2: 1.9235679149498166
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | current chi2=1.9235679149498166 (change=54.44219732326461 %)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | sum of square deviations: 233641590.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,826 | INFO     | sum of deviations: -19385355798.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | mean x: 1748154546.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | mean y: 2525660.769230769
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | -- intersect: 145047754398.08932
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | intersect: 145047754398.08932
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | chi2: 0.8094387361145676
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | current chi2=0.8094387361145676 (change=57.919929427826574 %)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | sum of square deviations: 197203697.5
[2025-05-25 16:16:25] 2025-05-25 07:16:11,827 | INFO     | sum of deviations: -18154900398.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | mean x: 1748154698.5
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | mean y: 2520095.581395349
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | -- intersect: 160940549320.73434
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | intersect: 160940549320.73434
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | chi2: 0.7593840583127528
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | current chi2=0.7593840583127528 (change=6.1838747725473455 %)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | left removable region: 30
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | sum of square deviations: 85136480.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,828 | INFO     | sum of deviations: -4528012188.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | mean x: 1748154973.0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | mean y: 2506738.1384615386
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | -- intersect: 92978714167.16078
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | intersect: 92978714167.16078
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | chi2: 0.03715401912846821
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | -- intersect: 92978714167.16078
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | current memory leak: -53.19 B/s (using 65 data points, chi2=0.04)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,829 | INFO     | ..............................
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . Timing measurements:
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . get job = 0 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . initial setup = 4 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . payload setup = 3 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . stage-in = 0 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . payload execution = 6103 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . stage-out = 0 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | . log creation = 0 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,830 | INFO     | ..............................
[2025-05-25 16:16:25] 2025-05-25 07:16:11,885 | INFO     | 
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | job summary report
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | --------------------------------------------------
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | PanDA job id: 6665675463
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | task id: 44871837
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | errors: (none)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | pilot state: finished 
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | transexitcode: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | exeerrorcode: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | exeerrordiag: 
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | exitcode: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | exitmsg: OK
[2025-05-25 16:16:25] 2025-05-25 07:16:11,886 | INFO     | cpuconsumptiontime: 31982 s
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | nevents: 400
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | neventsw: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | pid: 1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | pgrp: 1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | corecount: 6
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | event service: False
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | sizes: {0: 2393568, 1: 2393767, 3: 2393973, 11: 2394001, 6110: 2420672, 6111: 2429613, 6112: 2429797, 6187: 2429967}
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | --------------------------------------------------
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | 
[2025-05-25 16:16:25] 2025-05-25 07:16:11,887 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | job 6665675463 has completed (purged errors)
[2025-05-25 16:16:25] 2025-05-25 07:16:11,902 | INFO     | overall cleanup function is called
[2025-05-25 16:16:25] 2025-05-25 07:16:12,908 | INFO     | --- collectZombieJob: --- 10, [1794971]
[2025-05-25 16:16:25] 2025-05-25 07:16:12,908 | INFO     | zombie collector waiting for pid 1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:12,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 16:16:25] 2025-05-25 07:16:12,909 | INFO     | collected zombie processes
[2025-05-25 16:16:25] 2025-05-25 07:16:12,909 | INFO     | will attempt to kill all subprocesses of pid=1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:12,973 | INFO     | process IDs to be killed: [1794971] (in reverse order)
[2025-05-25 16:16:25] 2025-05-25 07:16:13,010 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 16:16:25] 2025-05-25 07:16:13,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 16:16:25] 2025-05-25 07:16:13,013 | INFO     | did not find any defunct processes belonging to 1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:13,016 | INFO     | did not find any defunct processes belonging to 1794971
[2025-05-25 16:16:25] 2025-05-25 07:16:13,016 | INFO     | ready for new job
[2025-05-25 16:16:25] 2025-05-25 07:16:13,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 16:16:25] 2025-05-25 07:16:13,018 | INFO     | **************************************
[2025-05-25 16:16:25] 2025-05-25 07:16:13,018 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 16:16:25] 2025-05-25 07:16:13,018 | INFO     | **************************************
[2025-05-25 16:16:25] 2025-05-25 07:16:13,018 | INFO     | 
[2025-05-25 16:16:25] 2025-05-25 07:16:13,019 | INFO     | architecture information:
[2025-05-25 16:16:25] 2025-05-25 07:16:13,019 | INFO     | executing command: cat /etc/os-release
[2025-05-25 16:16:25] 2025-05-25 07:16:13,029 | INFO     | cat /etc/os-release:
[2025-05-25 16:16:25] NAME="CentOS Linux"
[2025-05-25 16:16:25] VERSION="7 (Core)"
[2025-05-25 16:16:25] ID="centos"
[2025-05-25 16:16:25] ID_LIKE="rhel fedora"
[2025-05-25 16:16:25] VERSION_ID="7"
[2025-05-25 16:16:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 16:16:25] ANSI_COLOR="0;31"
[2025-05-25 16:16:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 16:16:25] HOME_URL="https://www.centos.org/"
[2025-05-25 16:16:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 16:16:25] 
[2025-05-25 16:16:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 16:16:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 16:16:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 16:16:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 16:16:25] 
[2025-05-25 16:16:25] 2025-05-25 07:16:13,029 | INFO     | **************************************
[2025-05-25 16:16:25] 2025-05-25 07:16:13,532 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-05-25 16:16:25] 2025-05-25 07:16:13,541 | INFO     | sufficient remaining disk space (77402734592 B)
[2025-05-25 16:16:25] 2025-05-25 07:16:13,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 16:16:25] 2025-05-25 07:16:13,541 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 16:16:25] 2025-05-25 07:16:13,541 | INFO     | update_server=False
[2025-05-25 16:16:25] 2025-05-25 07:16:13,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | INFO     | aborting loop
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 16:16:25] 2025-05-25 07:16:13,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 16:16:25] 2025-05-25 07:16:14,014 | INFO     | all job control threads have been joined
[2025-05-25 16:16:25] 2025-05-25 07:16:14,376 | INFO     | all data control threads have been joined
[2025-05-25 16:16:25] 2025-05-25 07:16:14,547 | INFO     | [job] retrieve thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,547 | INFO     | [job] queue monitor thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,548 | INFO     | [job] job monitor thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,578 | INFO     | [job] validate thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,687 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 16:16:25] 2025-05-25 07:16:14,775 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,846 | INFO     | [payload] validate_post thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:14,944 | INFO     | all payload control threads have been joined
[2025-05-25 16:16:25] 2025-05-25 07:16:15,019 | INFO     | [job] control thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,381 | INFO     | [data] control thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 16:16:25] 2025-05-25 07:16:15,563 | INFO     | [payload] failed_post thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,654 | INFO     | [data] copytool_in thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,890 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:15,949 | INFO     | [payload] control thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:16,739 | INFO     | [data] copytool_out thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:19,424 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 16:16:25] 2025-05-25 07:16:20,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830025615168)>', '<ExcThread(monitor, started 139829077591808)>']
[2025-05-25 16:16:25] 2025-05-25 07:16:21,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 16:16:25] 2025-05-25 07:16:21,578 | INFO     | [monitor] control thread has ended
[2025-05-25 16:16:25] 2025-05-25 07:16:25,758 | INFO     | all workflow threads have been joined
[2025-05-25 16:16:25] 2025-05-25 07:16:25,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 16:16:25] 2025-05-25 07:16:25,759 | INFO     | traces error code: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:25,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 16:16:25] 2025-05-25 07:16:25,825 [wrapper] ==== pilot stdout END ====
[2025-05-25 16:16:25] 2025-05-25 07:16:25,827 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 16:16:25] 2025-05-25 07:16:25,829 [wrapper] pilotpid: 1788414
[2025-05-25 16:16:25] 2025-05-25 07:16:25,830 [wrapper] Pilot exit status: 0
[2025-05-25 16:16:25] 2025-05-25 07:16:25,837 [wrapper] pandaids: 6665675463
[2025-05-25 16:16:25] 2025-05-25 07:16:25,862 [wrapper] cleanup supervisor_pilot 1832941 1788415
[2025-05-25 16:16:25] 2025-05-25 07:16:25,864 [wrapper] Test setup, not cleaning
[2025-05-25 16:16:25] 2025-05-25 07:16:25,865 [wrapper] apfmon messages muted
[2025-05-25 16:16:25] 2025-05-25 07:16:25,867 [wrapper] ==== wrapper stdout END ====
[2025-05-25 16:16:25] 2025-05-25 07:16:25,869 [wrapper] ==== wrapper stderr END ====
[2025-05-25 16:16:25]  *** Error codes and diagnostics ***
[2025-05-25 16:16:25]     "exeErrorCode": 0,
[2025-05-25 16:16:25]     "exeErrorDiag": "",
[2025-05-25 16:16:25]     "pilotErrorCode": 0,
[2025-05-25 16:16:25]     "pilotErrorDiag": "",
[2025-05-25 16:16:25]  *** Listing of results directory ***
[2025-05-25 16:16:25] total 428464
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc    495897 May 25 01:47 pilot3.tar.gz
[2025-05-25 16:16:25] -rwx------. 1 boinc boinc     37140 May 25 02:20 runpilot2-wrapper.sh
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc      5111 May 25 02:20 queuedata.json
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc       100 May 25 14:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 16:16:25] -rwxr-xr-x. 1 boinc boinc      7986 May 25 14:32 run_atlas
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc       105 May 25 14:32 job.xml
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc 227587163 May 25 14:32 EVNT.44871834._000837.pool.root.1
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc     15093 May 25 14:32 start_atlas.sh
[2025-05-25 16:16:25] drwxrwx--x. 2 boinc boinc        68 May 25 14:32 shared
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc    508872 May 25 14:32 input.tar.gz
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc      9464 May 25 14:32 init_data.xml
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc         0 May 25 14:32 boinc_lockfile
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc      2558 May 25 14:32 pandaJob.out
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc    990811 May 25 14:32 agis_schedconf.cvmfs.json
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc   1596740 May 25 14:32 agis_ddmendpoints.agis.ALL.json
[2025-05-25 16:16:25] drwx------. 4 boinc boinc      4096 May 25 14:32 pilot3
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc 205547406 May 25 16:14 HITS.44871837._021017.pool.root.1
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc       529 May 25 16:14 boinc_task_state.xml
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc      1019 May 25 16:14 memory_monitor_summary.json
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc    298685 May 25 16:14 log.44871837._021017.job.log.tgz.1
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc        95 May 25 16:15 pilot_heartbeat.json
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc      8192 May 25 16:16 boinc_mmap_file
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc        27 May 25 16:16 wrapper_checkpoint.txt
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc      7673 May 25 16:16 heartbeat.json
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc      4476 May 25 16:16 pilotlog.txt
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc    594002 May 25 16:16 log.44871837._021017.job.log.1
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc       357 May 25 16:16 output.list
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc       620 May 25 16:16 runtime_log
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc    911360 May 25 16:16 result.tar.gz
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc      8617 May 25 16:16 runtime_log.err
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc       641 May 25 16:16 MqCMDm4i7c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT6RKDmCX6DUm.diag
[2025-05-25 16:16:25] -rw-r--r--. 1 boinc boinc     20535 May 25 16:16 stderr.txt
[2025-05-25 16:16:25] HITS file was successfully produced:
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc 205547406 May 25 16:14 shared/HITS.pool.root.1
[2025-05-25 16:16:25]  *** Contents of shared directory: ***
[2025-05-25 16:16:25] total 424400
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc 227587163 May 25 14:32 ATLAS.root_0
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc     15093 May 25 14:32 start_atlas.sh
[2025-05-25 16:16:25] -rw-r--r--. 2 boinc boinc    508872 May 25 14:32 input.tar.gz
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc 205547406 May 25 16:14 HITS.pool.root.1
[2025-05-25 16:16:25] -rw-------. 1 boinc boinc    911360 May 25 16:16 result.tar.gz
16:16:27 (1784686): run_atlas exited; CPU time 32036.208845
16:16:27 (1784686): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN