Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:42:32 (454520): wrapper (7.7.26015): starting
18:42:32 (454520): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 18:42:32] Arguments: --nthreads 8
[2025-05-24 18:42:32] Threads: 8
[2025-05-24 18:42:32] Checking for CVMFS
[2025-05-24 18:42:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 18:42:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 18:42:33] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 18:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 18:42:34] 2.12.6.0 9858 16177 441724 146382 1 521 24575009 32935936 23265 16776704 1 57968801 99.517 73380077 21754 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 18:42:34] CVMFS is ok
[2025-05-24 18:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 18:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 18:42:34] Further information can be found at the LHC@home message board.
[2025-05-24 18:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 18:42:34] Checking for apptainer binary...
[2025-05-24 18:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 18:42:34] Running /usr/bin/apptainer --version
[2025-05-24 18:42:34] apptainer version 1.4.1-1.el9
[2025-05-24 18:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 18:42:34] c6-2-11-2.aglt2.org
[2025-05-24 18:42:34] apptainer works
[2025-05-24 18:42:35] Set ATHENA_PROC_NUMBER=8
[2025-05-24 18:42:35] Set ATHENA_CORE_NUMBER=8
[2025-05-24 18:42:35] Starting ATLAS job with PandaID=6665675372
[2025-05-24 18:42:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:46:14 (2001184): wrapper (7.7.26015): starting
00:46:14 (2001184): wrapper: running run_atlas (--nthreads 8)
[2025-05-25 00:46:14] Arguments: --nthreads 8
[2025-05-25 00:46:14] Threads: 8
[2025-05-25 00:46:14] This job has been restarted, cleaning up previous attempt
[2025-05-25 00:46:14] Checking for CVMFS
[2025-05-25 00:46:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 00:46:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 00:46:14] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 00:46:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 00:46:15] 2.12.6.0 9858 16541 426624 146390 2 305 25389551 32935936 22866 16776704 1 59394859 99.527 73745253 21787 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-25 00:46:15] CVMFS is ok
[2025-05-25 00:46:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 00:46:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 00:46:15] Further information can be found at the LHC@home message board.
[2025-05-25 00:46:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 00:46:15] Checking for apptainer binary...
[2025-05-25 00:46:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 00:46:15] Running /usr/bin/apptainer --version
[2025-05-25 00:46:15] apptainer version 1.4.1-1.el9
[2025-05-25 00:46:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 00:46:15] c6-2-11-2.aglt2.org
[2025-05-25 00:46:15] apptainer works
[2025-05-25 00:46:15] Set ATHENA_PROC_NUMBER=8
[2025-05-25 00:46:15] Set ATHENA_CORE_NUMBER=8
[2025-05-25 00:46:15] Starting ATLAS job with PandaID=6665675372
[2025-05-25 00:46:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 06:33:50]  *** The last 200 lines of the pilot log: ***
[2025-05-25 06:33:50] 2025-05-25 10:33:36,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-25 06:33:50] 2025-05-25 10:33:36,885 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6665675372/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,886 | INFO     | extracted standard info from prmon json
[2025-05-25 06:33:50] 2025-05-25 10:33:36,886 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 06:33:50] 2025-05-25 10:33:36,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 06:33:50] 2025-05-25 10:33:36,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 06:33:50] 2025-05-25 10:33:36,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 06:33:50] 2025-05-25 10:33:36,895 | INFO     | fitting pss+swap vs Time
[2025-05-25 06:33:50] 2025-05-25 10:33:36,895 | INFO     | sum of square deviations: 12295186002.152468
[2025-05-25 06:33:50] 2025-05-25 10:33:36,898 | INFO     | sum of deviations: 89525414821.23154
[2025-05-25 06:33:50] 2025-05-25 10:33:36,898 | INFO     | mean x: 1748158814.0498533
[2025-05-25 06:33:50] 2025-05-25 10:33:36,899 | INFO     | mean y: 2098869.633431085
[2025-05-25 06:33:50] 2025-05-25 10:33:36,899 | INFO     | -- intersect: -12726837721.794033
[2025-05-25 06:33:50] 2025-05-25 10:33:36,899 | INFO     | intersect: -12726837721.794033
[2025-05-25 06:33:50] 2025-05-25 10:33:36,899 | INFO     | chi2: 2.804635007351031
[2025-05-25 06:33:50] 2025-05-25 10:33:36,900 | INFO     | sum of square deviations: 11762232357.139849
[2025-05-25 06:33:50] 2025-05-25 10:33:36,903 | INFO     | sum of deviations: 107041459945.05359
[2025-05-25 06:33:50] 2025-05-25 10:33:36,903 | INFO     | mean x: 1748158661.5505953
[2025-05-25 06:33:50] 2025-05-25 10:33:36,903 | INFO     | mean y: 2103815.2321428573
[2025-05-25 06:33:50] 2025-05-25 10:33:36,903 | INFO     | -- intersect: -15906904752.718702
[2025-05-25 06:33:50] 2025-05-25 10:33:36,903 | INFO     | intersect: -15906904752.718702
[2025-05-25 06:33:50] 2025-05-25 10:33:36,904 | INFO     | chi2: 1.996648376849902
[2025-05-25 06:33:50] 2025-05-25 10:33:36,904 | INFO     | current chi2=1.996648376849902 (change=28.80897615494966 %)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,904 | INFO     | sum of square deviations: 11244906912.126846
[2025-05-25 06:33:50] 2025-05-25 10:33:36,907 | INFO     | sum of deviations: 103164342644.52263
[2025-05-25 06:33:50] 2025-05-25 10:33:36,907 | INFO     | mean x: 1748158509.0513594
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | mean y: 2102670.6163141993
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | -- intersect: -16036057968.154287
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | intersect: -16036057968.154287
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | chi2: 1.9966969338574827
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | current chi2=1.9966969338574827 (change=-0.0024319258284917454 %)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,908 | INFO     | right removable region: 330
[2025-05-25 06:33:50] 2025-05-25 10:33:36,909 | INFO     | sum of square deviations: 11762221987.139849
[2025-05-25 06:33:50] 2025-05-25 10:33:36,912 | INFO     | sum of deviations: 30909976267.866123
[2025-05-25 06:33:50] 2025-05-25 10:33:36,912 | INFO     | mean x: 1748158966.5505953
[2025-05-25 06:33:50] 2025-05-25 10:33:36,912 | INFO     | mean y: 2115580.9196428573
[2025-05-25 06:33:50] 2025-05-25 10:33:36,912 | INFO     | -- intersect: -4591876287.930962
[2025-05-25 06:33:50] 2025-05-25 10:33:36,912 | INFO     | intersect: -4591876287.930962
[2025-05-25 06:33:50] 2025-05-25 10:33:36,913 | INFO     | chi2: 1.0457333468942356
[2025-05-25 06:33:50] 2025-05-25 10:33:36,913 | INFO     | current chi2=1.0457333468942356 (change=62.714102043462425 %)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,913 | INFO     | sum of square deviations: 11244906667.22657
[2025-05-25 06:33:50] 2025-05-25 10:33:36,916 | INFO     | sum of deviations: 16391842660.329308
[2025-05-25 06:33:50] 2025-05-25 10:33:36,916 | INFO     | mean x: 1748159119.0483384
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | mean y: 2119848.416918429
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | -- intersect: -2546193807.949589
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | intersect: -2546193807.949589
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | chi2: 0.9379028586291138
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | current chi2=0.9379028586291138 (change=10.311470757375362 %)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,917 | INFO     | left removable region: 20
[2025-05-25 06:33:50] 2025-05-25 10:33:36,918 | INFO     | sum of square deviations: 9237628005.109735
[2025-05-25 06:33:50] 2025-05-25 10:33:36,920 | INFO     | sum of deviations: 24225496913.09031
[2025-05-25 06:33:50] 2025-05-25 10:33:36,920 | INFO     | mean x: 1748159088.5354838
[2025-05-25 06:33:50] 2025-05-25 10:33:36,921 | INFO     | mean y: 2126708.264516129
[2025-05-25 06:33:50] 2025-05-25 10:33:36,921 | INFO     | -- intersect: -4582385958.783939
[2025-05-25 06:33:50] 2025-05-25 10:33:36,921 | INFO     | intersect: -4582385958.783939
[2025-05-25 06:33:50] 2025-05-25 10:33:36,921 | INFO     | chi2: 0.10623692876738174
[2025-05-25 06:33:50] 2025-05-25 10:33:36,921 | INFO     | -- intersect: -4582385958.783939
[2025-05-25 06:33:50] 2025-05-25 10:33:36,922 | INFO     | current memory leak: 2.62 B/s (using 310 data points, chi2=0.11)
[2025-05-25 06:33:50] 2025-05-25 10:33:36,922 | INFO     | ..............................
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . Timing measurements:
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . get job = 0 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . initial setup = 3 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . payload setup = 13 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . stage-in = 0 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . payload execution = 20769 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . stage-out = 2 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | . log creation = 0 s
[2025-05-25 06:33:50] 2025-05-25 10:33:36,923 | INFO     | ..............................
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | 
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | job summary report
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | --------------------------------------------------
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | PanDA job id: 6665675372
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | task id: 44871837
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | errors: (none)
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 06:33:50] 2025-05-25 10:33:37,487 | INFO     | pilot state: finished 
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | transexitcode: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | exeerrorcode: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | exeerrordiag: 
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | exitcode: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | exitmsg: OK
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | cpuconsumptiontime: 53554 s
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | nevents: 400
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | neventsw: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | pid: 2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | pgrp: 2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | corecount: 8
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | event service: False
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | sizes: {0: 2392911, 1: 2393596, 2: 2393795, 11: 2394001, 13: 2394029, 20787: 2427264, 20790: 2436205, 20793: 2436261, 20802: 2436431}
[2025-05-25 06:33:50] 2025-05-25 10:33:37,488 | INFO     | --------------------------------------------------
[2025-05-25 06:33:50] 2025-05-25 10:33:37,489 | INFO     | 
[2025-05-25 06:33:50] 2025-05-25 10:33:37,489 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 06:33:50] 2025-05-25 10:33:37,535 | INFO     | job 6665675372 has completed (purged errors)
[2025-05-25 06:33:50] 2025-05-25 10:33:37,535 | INFO     | overall cleanup function is called
[2025-05-25 06:33:50] 2025-05-25 10:33:38,545 | INFO     | --- collectZombieJob: --- 10, [2063405]
[2025-05-25 06:33:50] 2025-05-25 10:33:38,545 | INFO     | zombie collector waiting for pid 2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:38,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 06:33:50] 2025-05-25 10:33:38,545 | INFO     | collected zombie processes
[2025-05-25 06:33:50] 2025-05-25 10:33:38,545 | INFO     | will attempt to kill all subprocesses of pid=2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:38,977 | INFO     | process IDs to be killed: [2063405] (in reverse order)
[2025-05-25 06:33:50] 2025-05-25 10:33:39,138 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 06:33:50] 2025-05-25 10:33:39,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 06:33:50] 2025-05-25 10:33:39,158 | INFO     | did not find any defunct processes belonging to 2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:39,189 | INFO     | did not find any defunct processes belonging to 2063405
[2025-05-25 06:33:50] 2025-05-25 10:33:39,190 | INFO     | ready for new job
[2025-05-25 06:33:50] 2025-05-25 10:33:39,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 06:33:50] 2025-05-25 10:33:39,192 | INFO     | **************************************
[2025-05-25 06:33:50] 2025-05-25 10:33:39,192 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 06:33:50] 2025-05-25 10:33:39,192 | INFO     | **************************************
[2025-05-25 06:33:50] 2025-05-25 10:33:39,192 | INFO     | 
[2025-05-25 06:33:50] 2025-05-25 10:33:39,212 | INFO     | architecture information:
[2025-05-25 06:33:50] 2025-05-25 10:33:39,213 | INFO     | executing command: cat /etc/os-release
[2025-05-25 06:33:50] 2025-05-25 10:33:39,242 | INFO     | cat /etc/os-release:
[2025-05-25 06:33:50] NAME="CentOS Linux"
[2025-05-25 06:33:50] VERSION="7 (Core)"
[2025-05-25 06:33:50] ID="centos"
[2025-05-25 06:33:50] ID_LIKE="rhel fedora"
[2025-05-25 06:33:50] VERSION_ID="7"
[2025-05-25 06:33:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 06:33:50] ANSI_COLOR="0;31"
[2025-05-25 06:33:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 06:33:50] HOME_URL="https://www.centos.org/"
[2025-05-25 06:33:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 06:33:50] 
[2025-05-25 06:33:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 06:33:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 06:33:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 06:33:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 06:33:50] 
[2025-05-25 06:33:50] 2025-05-25 10:33:39,249 | INFO     | **************************************
[2025-05-25 06:33:50] 2025-05-25 10:33:39,754 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-25 06:33:50] 2025-05-25 10:33:39,783 | INFO     | sufficient remaining disk space (93782540288 B)
[2025-05-25 06:33:50] 2025-05-25 10:33:39,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 06:33:50] 2025-05-25 10:33:39,784 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 06:33:50] 2025-05-25 10:33:39,785 | INFO     | update_server=False
[2025-05-25 06:33:50] 2025-05-25 10:33:39,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 06:33:50] 2025-05-25 10:33:39,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 06:33:50] 2025-05-25 10:33:39,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 06:33:50] 2025-05-25 10:33:39,787 | INFO     | aborting loop
[2025-05-25 06:33:50] 2025-05-25 10:33:39,841 | INFO     | all job control threads have been joined
[2025-05-25 06:33:50] 2025-05-25 10:33:40,052 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 06:33:50] 2025-05-25 10:33:40,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 06:33:50] 2025-05-25 10:33:40,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 06:33:50] 2025-05-25 10:33:40,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 06:33:50] 2025-05-25 10:33:40,305 | INFO     | all payload control threads have been joined
[2025-05-25 06:33:50] 2025-05-25 10:33:40,606 | INFO     | all data control threads have been joined
[2025-05-25 06:33:50] 2025-05-25 10:33:40,792 | INFO     | [job] job monitor thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:40,799 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:40,809 | INFO     | [job] retrieve thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:40,847 | INFO     | [job] control thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,075 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,311 | INFO     | [payload] control thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,329 | INFO     | [payload] failed_post thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,573 | INFO     | [job] validate thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,616 | INFO     | [data] control thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,872 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:41,996 | INFO     | [data] copytool_in thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:42,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 06:33:50] 2025-05-25 10:33:42,149 | INFO     | [payload] validate_post thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:42,225 | INFO     | [data] copytool_out thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:43,050 | INFO     | [job] queue monitor thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:43,795 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 06:33:50] 2025-05-25 10:33:44,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843008988992)>', '<ExcThread(monitor, started 139842356754176)>']
[2025-05-25 06:33:50] 2025-05-25 10:33:45,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 06:33:50] 2025-05-25 10:33:45,081 | INFO     | [monitor] control thread has ended
[2025-05-25 06:33:50] 2025-05-25 10:33:49,274 | INFO     | all workflow threads have been joined
[2025-05-25 06:33:50] 2025-05-25 10:33:49,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 06:33:50] 2025-05-25 10:33:49,275 | INFO     | traces error code: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:49,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 06:33:50] 2025-05-25 10:33:49,473 [wrapper] ==== pilot stdout END ====
[2025-05-25 06:33:50] 2025-05-25 10:33:49,475 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 06:33:50] 2025-05-25 10:33:49,482 [wrapper] pilotpid: 2022945
[2025-05-25 06:33:50] 2025-05-25 10:33:49,490 [wrapper] Pilot exit status: 0
[2025-05-25 06:33:50] 2025-05-25 10:33:49,504 [wrapper] pandaids: 6665675372 6665675372
[2025-05-25 06:33:50] 2025-05-25 10:33:49,610 [wrapper] cleanup supervisor_pilot 3819171 2022947
[2025-05-25 06:33:50] 2025-05-25 10:33:49,614 [wrapper] Test setup, not cleaning
[2025-05-25 06:33:50] 2025-05-25 10:33:49,619 [wrapper] apfmon messages muted
[2025-05-25 06:33:50] 2025-05-25 10:33:49,628 [wrapper] ==== wrapper stdout END ====
[2025-05-25 06:33:50] 2025-05-25 10:33:49,648 [wrapper] ==== wrapper stderr END ====
[2025-05-25 06:33:50]  *** Error codes and diagnostics ***
[2025-05-25 06:33:50]     "exeErrorCode": 0,
[2025-05-25 06:33:50]     "exeErrorDiag": "",
[2025-05-25 06:33:50]     "pilotErrorCode": 0,
[2025-05-25 06:33:50]     "pilotErrorDiag": "",
[2025-05-25 06:33:50]  *** Listing of results directory ***
[2025-05-25 06:33:50] total 644552
[2025-05-25 06:33:50] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas    495897 May 24 12:47 pilot3.tar.gz
[2025-05-25 06:33:50] -rwx------. 1 boincer umatlas     37140 May 24 13:08 runpilot2-wrapper.sh
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas      5111 May 24 13:08 queuedata.json
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas       100 May 24 18:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 06:33:50] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 18:42 run_atlas
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas       105 May 24 18:42 job.xml
[2025-05-25 06:33:50] -rw-r--r--. 3 boincer umatlas 224347711 May 24 18:42 EVNT.44871834._000834.pool.root.1
[2025-05-25 06:33:50] -rw-r--r--. 3 boincer umatlas 224347711 May 24 18:42 ATLAS.root_0
[2025-05-25 06:33:50] -rw-r--r--. 2 boincer umatlas     15093 May 24 18:42 start_atlas.sh
[2025-05-25 06:33:50] drwxrwx--x. 2 boincer umatlas      4096 May 24 18:42 shared
[2025-05-25 06:33:50] -rw-r--r--. 2 boincer umatlas    508878 May 24 18:42 input.tar.gz
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas         0 May 24 18:42 boinc_lockfile
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas      2558 May 25 00:46 pandaJob.out
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas    990803 May 25 00:46 agis_schedconf.cvmfs.json
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas      6858 May 25 06:31 init_data.xml
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas 203200540 May 25 06:32 HITS.44871837._020926.pool.root.1
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas       532 May 25 06:32 boinc_task_state.xml
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas        96 May 25 06:33 pilot_heartbeat.json
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas      1045 May 25 06:33 memory_monitor_summary.json
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas   1596740 May 25 06:33 agis_ddmendpoints.agis.ALL.json
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas    445000 May 25 06:33 log.44871837._020926.job.log.tgz.1
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas      7724 May 25 06:33 heartbeat.json
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas        29 May 25 06:33 wrapper_checkpoint.txt
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas      4353 May 25 06:33 pilotlog.txt
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas      8192 May 25 06:33 boinc_mmap_file
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas   1696272 May 25 06:33 log.44871837._020926.job.log.1
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas       357 May 25 06:33 output.list
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas       620 May 25 06:33 runtime_log
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas   2160640 May 25 06:33 result.tar.gz
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas      8750 May 25 06:33 runtime_log.err
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas       781 May 25 06:33 h4RNDm8W7c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmW5RKDmAH8qIn.diag
[2025-05-25 06:33:50] -rw-r--r--. 1 boincer umatlas     23089 May 25 06:33 stderr.txt
[2025-05-25 06:33:50] HITS file was successfully produced:
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas 203200540 May 25 06:32 shared/HITS.pool.root.1
[2025-05-25 06:33:50]  *** Contents of shared directory: ***
[2025-05-25 06:33:50] total 420168
[2025-05-25 06:33:50] -rw-r--r--. 3 boincer umatlas 224347711 May 24 18:42 ATLAS.root_0
[2025-05-25 06:33:50] -rw-r--r--. 2 boincer umatlas     15093 May 24 18:42 start_atlas.sh
[2025-05-25 06:33:50] -rw-r--r--. 2 boincer umatlas    508878 May 24 18:42 input.tar.gz
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas 203200540 May 25 06:32 HITS.pool.root.1
[2025-05-25 06:33:50] -rw-------. 1 boincer umatlas   2160640 May 25 06:33 result.tar.gz
06:33:52 (2001184): run_atlas exited; CPU time 54453.436668
06:33:52 (2001184): called boinc_finish(0)

</stderr_txt>
]]>

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