Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:34:57 (3791748): wrapper (7.7.26015): starting
17:34:57 (3791748): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 17:34:57] Arguments: --nthreads 8
[2025-05-24 17:34:57] Threads: 8
[2025-05-24 17:34:57] Checking for CVMFS
[2025-05-24 17:34:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 17:34:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 17:34:57] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 17:34:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 17:34:58] 2.12.6.0 267692 9178 152372 146380 2 453 31176863 40960001 43061 16776704 0 99649099 99.775 65159512 37839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 17:34:58] CVMFS is ok
[2025-05-24 17:34:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 17:34:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 17:34:58] Further information can be found at the LHC@home message board.
[2025-05-24 17:34:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 17:34:58] Checking for apptainer binary...
[2025-05-24 17:34:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 17:34:58] Running /usr/bin/apptainer --version
[2025-05-24 17:34:59] apptainer version 1.4.1-1.el9
[2025-05-24 17:34:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 17:34:59] c8-16-1.aglt2.org
[2025-05-24 17:34:59] apptainer works
[2025-05-24 17:34:59] Set ATHENA_PROC_NUMBER=8
[2025-05-24 17:34:59] Set ATHENA_CORE_NUMBER=8
[2025-05-24 17:34:59] Starting ATLAS job with PandaID=6665632176
[2025-05-24 17:34:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 20:53:07]  *** The last 200 lines of the pilot log: ***
[2025-05-24 20:53:07] 2025-05-25 00:52:46,865 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 20:53:07] 2025-05-25 00:52:46,865 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 20:53:07] 2025-05-25 00:52:46,865 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 20:53:07] 2025-05-25 00:52:46,865 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 20:53:07] 2025-05-25 00:52:46,872 | INFO     | fitting pss+swap vs Time
[2025-05-24 20:53:07] 2025-05-25 00:52:46,872 | INFO     | sum of square deviations: 2126832993.0736806
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | sum of deviations: 71851222482.81055
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | mean x: 1748128530.5473685
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | mean y: 2076727.5210526315
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | -- intersect: -59055297493.19016
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | intersect: -59055297493.19016
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | chi2: 6.770471845746755
[2025-05-24 20:53:07] 2025-05-25 00:52:46,873 | INFO     | sum of square deviations: 1963307090.562164
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | sum of deviations: 83119057293.67567
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | mean x: 1748128378.0486486
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | mean y: 2087009.7027027027
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | -- intersect: -74007110792.42036
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | intersect: -74007110792.42036
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | chi2: 6.041702841443219
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | current chi2=6.041702841443219 (change=10.76393227691143 %)
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | right removable region: 184
[2025-05-24 20:53:07] 2025-05-25 00:52:46,874 | INFO     | sum of square deviations: 1963301600.562164
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | sum of deviations: 19520508427.281094
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | mean x: 1748128683.0486486
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | mean y: 2125451.5243243244
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | -- intersect: -17378984348.23946
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | intersect: -17378984348.23946
[2025-05-24 20:53:07] 2025-05-25 00:52:46,875 | INFO     | chi2: 2.4738267649320713
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | current chi2=2.4738267649320713 (change=63.461530875634 %)
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | sum of square deviations: 1808375020.5499957
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | sum of deviations: -9021853043.7
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | mean x: 1748128835.55
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | mean y: 2153403.7444444443
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | -- intersect: 8723442559.23711
[2025-05-24 20:53:07] 2025-05-25 00:52:46,876 | INFO     | intersect: 8723442559.23711
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | chi2: 1.1602619625730517
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | current chi2=1.1602619625730517 (change=53.09849585991883 %)
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | sum of square deviations: 1661820690.537146
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | sum of deviations: -13070867711.611427
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | mean x: 1748128988.0514286
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | mean y: 2157562.8457142855
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | -- intersect: 13751873687.915604
[2025-05-24 20:53:07] 2025-05-25 00:52:46,877 | INFO     | intersect: 13751873687.915604
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | chi2: 1.1050552224205368
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | current chi2=1.1050552224205368 (change=4.75812721034876 %)
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | left removable region: 30
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | sum of square deviations: 1132495598.1818213
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | sum of deviations: 13579218179.90909
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | mean x: 1748129262.5454545
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | mean y: 2152000.512987013
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | -- intersect: -20958837782.49291
[2025-05-24 20:53:07] 2025-05-25 00:52:46,878 | INFO     | intersect: -20958837782.49291
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | chi2: 0.050355317380137626
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | -- intersect: -20958837782.49291
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | current memory leak: 11.99 B/s (using 154 data points, chi2=0.05)
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | ..............................
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . Timing measurements:
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . get job = 0 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . initial setup = 9 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . payload setup = 73 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . stage-in = 0 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . payload execution = 11572 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . stage-out = 4 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | . log creation = 0 s
[2025-05-24 20:53:07] 2025-05-25 00:52:46,879 | INFO     | ..............................
[2025-05-24 20:53:07] 2025-05-25 00:52:47,095 | INFO     | 
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | job summary report
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | --------------------------------------------------
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | PanDA job id: 6665632176
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | task id: 44871837
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | errors: (none)
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | pilot state: finished 
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | transexitcode: 0
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | exeerrorcode: 0
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | exeerrordiag: 
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | exitcode: 0
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | exitmsg: OK
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | cpuconsumptiontime: 28916 s
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | nevents: 400
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | neventsw: 0
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | pid: 3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | pgrp: 3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | corecount: 8
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | event service: False
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | sizes: {0: 2393512, 1: 2393767, 12: 2393767, 23: 2393795, 34: 2393823, 37: 2394057, 45: 2394213, 11647: 2423162, 11648: 2423161, 11655: 2432158, 11656: 2432214, 11
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | --------------------------------------------------
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | 
[2025-05-24 20:53:07] 2025-05-25 00:52:47,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | job 6665632176 has completed (purged errors)
[2025-05-24 20:53:07] 2025-05-25 00:52:47,329 | INFO     | overall cleanup function is called
[2025-05-24 20:53:07] 2025-05-25 00:52:48,346 | INFO     | --- collectZombieJob: --- 10, [3858814]
[2025-05-24 20:53:07] 2025-05-25 00:52:48,347 | INFO     | zombie collector waiting for pid 3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:48,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 20:53:07] 2025-05-25 00:52:48,347 | INFO     | collected zombie processes
[2025-05-24 20:53:07] 2025-05-25 00:52:48,347 | INFO     | will attempt to kill all subprocesses of pid=3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:51,211 | INFO     | process IDs to be killed: [3858814] (in reverse order)
[2025-05-24 20:53:07] 2025-05-25 00:52:51,453 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 20:53:07] 2025-05-25 00:52:51,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 20:53:07] 2025-05-25 00:52:51,557 | INFO     | PID=3808862 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-24 20:53:07] 2025-05-25 00:52:51,559 | INFO     | .. there are 69 such processes running
[2025-05-24 20:53:07] 2025-05-25 00:52:51,570 | INFO     | did not find any defunct processes belonging to 3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:51,601 | INFO     | did not find any defunct processes belonging to 3858814
[2025-05-24 20:53:07] 2025-05-25 00:52:51,601 | INFO     | ready for new job
[2025-05-24 20:53:07] 2025-05-25 00:52:51,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 20:53:07] 2025-05-25 00:52:51,603 | INFO     | **************************************
[2025-05-24 20:53:07] 2025-05-25 00:52:51,603 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 20:53:07] 2025-05-25 00:52:51,603 | INFO     | **************************************
[2025-05-24 20:53:07] 2025-05-25 00:52:51,603 | INFO     | 
[2025-05-24 20:53:07] 2025-05-25 00:52:51,608 | INFO     | architecture information:
[2025-05-24 20:53:07] 2025-05-25 00:52:51,608 | INFO     | executing command: cat /etc/os-release
[2025-05-24 20:53:07] 2025-05-25 00:52:51,692 | INFO     | cat /etc/os-release:
[2025-05-24 20:53:07] NAME="CentOS Linux"
[2025-05-24 20:53:07] VERSION="7 (Core)"
[2025-05-24 20:53:07] ID="centos"
[2025-05-24 20:53:07] ID_LIKE="rhel fedora"
[2025-05-24 20:53:07] VERSION_ID="7"
[2025-05-24 20:53:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 20:53:07] ANSI_COLOR="0;31"
[2025-05-24 20:53:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 20:53:07] HOME_URL="https://www.centos.org/"
[2025-05-24 20:53:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 20:53:07] 
[2025-05-24 20:53:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 20:53:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 20:53:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 20:53:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 20:53:07] 
[2025-05-24 20:53:07] 2025-05-25 00:52:51,692 | INFO     | **************************************
[2025-05-24 20:53:07] 2025-05-25 00:52:52,201 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-24 20:53:07] 2025-05-25 00:52:52,297 | INFO     | sufficient remaining disk space (169468755968 B)
[2025-05-24 20:53:07] 2025-05-25 00:52:52,297 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 20:53:07] 2025-05-25 00:52:52,297 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 20:53:07] 2025-05-25 00:52:52,297 | INFO     | update_server=False
[2025-05-24 20:53:07] 2025-05-25 00:52:52,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 20:53:07] 2025-05-25 00:52:52,300 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 20:53:07] 2025-05-25 00:52:52,300 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 20:53:07] 2025-05-25 00:52:52,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 20:53:07] 2025-05-25 00:52:52,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 20:53:07] 2025-05-25 00:52:52,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 20:53:07] 2025-05-25 00:52:52,307 | INFO     | all data control threads have been joined
[2025-05-24 20:53:07] 2025-05-25 00:52:53,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 20:53:07] 2025-05-25 00:52:53,195 | INFO     | aborting loop
[2025-05-24 20:53:07] 2025-05-25 00:52:53,310 | INFO     | [job] retrieve thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,311 | INFO     | [job] queue monitor thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,318 | INFO     | [data] control thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,590 | INFO     | [payload] failed_post thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,630 | INFO     | all job control threads have been joined
[2025-05-24 20:53:07] 2025-05-25 00:52:53,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 20:53:07] 2025-05-25 00:52:53,791 | INFO     | [payload] validate_post thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,804 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:53,832 | INFO     | all payload control threads have been joined
[2025-05-24 20:53:07] 2025-05-25 00:52:54,200 | INFO     | [job] job monitor thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,475 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,554 | INFO     | [data] copytool_in thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,577 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,578 | INFO     | [job] validate thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,616 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 20:53:07] 2025-05-25 00:52:54,635 | INFO     | [job] control thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:54,838 | INFO     | [payload] control thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:55,686 | INFO     | [data] copytool_out thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:58,641 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 20:53:07] 2025-05-25 00:52:59,637 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592786003776)>', '<ExcThread(monitor, started 140592415741696)>']
[2025-05-24 20:53:07] 2025-05-25 00:53:00,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 20:53:07] 2025-05-25 00:53:00,384 | INFO     | [monitor] control thread has ended
[2025-05-24 20:53:07] 2025-05-25 00:53:04,665 | INFO     | all workflow threads have been joined
[2025-05-24 20:53:07] 2025-05-25 00:53:04,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 20:53:07] 2025-05-25 00:53:04,666 | INFO     | traces error code: 0
[2025-05-24 20:53:07] 2025-05-25 00:53:04,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 20:53:07] 2025-05-25 00:53:05,111 [wrapper] ==== pilot stdout END ====
[2025-05-24 20:53:07] 2025-05-25 00:53:05,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 20:53:07] 2025-05-25 00:53:05,135 [wrapper] pilotpid: 3808862
[2025-05-24 20:53:07] 2025-05-25 00:53:05,166 [wrapper] Pilot exit status: 0
[2025-05-24 20:53:07] 2025-05-25 00:53:05,393 [wrapper] pandaids: 6665632176
[2025-05-24 20:53:07] 2025-05-25 00:53:05,620 [wrapper] cleanup supervisor_pilot 3267651 3808863
[2025-05-24 20:53:07] 2025-05-25 00:53:05,716 [wrapper] Test setup, not cleaning
[2025-05-24 20:53:07] 2025-05-25 00:53:05,759 [wrapper] apfmon messages muted
[2025-05-24 20:53:07] 2025-05-25 00:53:05,803 [wrapper] ==== wrapper stdout END ====
[2025-05-24 20:53:07] 2025-05-25 00:53:05,884 [wrapper] ==== wrapper stderr END ====
[2025-05-24 20:53:07]  *** Error codes and diagnostics ***
[2025-05-24 20:53:07]     "exeErrorCode": 0,
[2025-05-24 20:53:07]     "exeErrorDiag": "",
[2025-05-24 20:53:07]     "pilotErrorCode": 0,
[2025-05-24 20:53:07]     "pilotErrorDiag": "",
[2025-05-24 20:53:07]  *** Listing of results directory ***
[2025-05-24 20:53:07] total 416264
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas    495897 May 24 12:09 pilot3.tar.gz
[2025-05-24 20:53:07] -rwx------. 1 boincer umatlas     37140 May 24 12:15 runpilot2-wrapper.sh
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas      5111 May 24 12:15 queuedata.json
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas       100 May 24 17:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 20:53:07] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 17:34 run_atlas
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas       105 May 24 17:34 job.xml
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas 223285875 May 24 17:34 EVNT.44871834._000802.pool.root.1
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas     15093 May 24 17:34 start_atlas.sh
[2025-05-24 20:53:07] drwxrwx--x. 2 boincer umatlas      4096 May 24 17:34 shared
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas    508876 May 24 17:34 input.tar.gz
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas         0 May 24 17:34 boinc_lockfile
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas      2558 May 24 17:34 pandaJob.out
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas    990803 May 24 17:36 agis_schedconf.cvmfs.json
[2025-05-24 20:53:07] drwx------. 4 boincer umatlas      4096 May 24 17:36 pilot3
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas      7162 May 24 20:45 init_data.xml
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas 196505958 May 24 20:50 HITS.44871837._020104.pool.root.1
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas       530 May 24 20:50 boinc_task_state.xml
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas      1053 May 24 20:51 memory_monitor_summary.json
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas   1596740 May 24 20:51 agis_ddmendpoints.agis.ALL.json
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas    361966 May 24 20:51 log.44871837._020104.job.log.tgz.1
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas        95 May 24 20:52 pilot_heartbeat.json
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas      7724 May 24 20:52 heartbeat.json
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas        28 May 24 20:53 wrapper_checkpoint.txt
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas      4477 May 24 20:53 pilotlog.txt
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas    951762 May 24 20:53 log.44871837._020104.job.log.1
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas       357 May 24 20:53 output.list
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas       620 May 24 20:53 runtime_log
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas   1331200 May 24 20:53 result.tar.gz
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas      8655 May 24 20:53 runtime_log.err
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas       659 May 24 20:53 gYOKDm0h6c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmg0MKDmOWjt8m.diag
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas      8192 May 24 20:53 boinc_mmap_file
[2025-05-24 20:53:07] -rw-r--r--. 1 boincer umatlas     21039 May 24 20:53 stderr.txt
[2025-05-24 20:53:07] HITS file was successfully produced:
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas 196505958 May 24 20:50 shared/HITS.pool.root.1
[2025-05-24 20:53:07]  *** Contents of shared directory: ***
[2025-05-24 20:53:07] total 411784
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas 223285875 May 24 17:34 ATLAS.root_0
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas     15093 May 24 17:34 start_atlas.sh
[2025-05-24 20:53:07] -rw-r--r--. 2 boincer umatlas    508876 May 24 17:34 input.tar.gz
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas 196505958 May 24 20:50 HITS.pool.root.1
[2025-05-24 20:53:07] -rw-------. 1 boincer umatlas   1331200 May 24 20:53 result.tar.gz
20:53:09 (3791748): run_atlas exited; CPU time 29361.624048
20:53:09 (3791748): called boinc_finish(0)

</stderr_txt>
]]>

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