Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:16:16 (293236): wrapper (7.7.26015): starting
16:16:16 (293236): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 16:16:16] Arguments: --nthreads 8
[2025-05-24 16:16:16] Threads: 8
[2025-05-24 16:16:16] Checking for CVMFS
[2025-05-24 16:16:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 16:16:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 16:16:17] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 16:16:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 16:16:18] 2.12.6.0 1723263 8172 267052 146378 2 426 35818829 40960001 42593 16776704 0 98682909 99.691 78793629 38822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 16:16:18] CVMFS is ok
[2025-05-24 16:16:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 16:16:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 16:16:18] Further information can be found at the LHC@home message board.
[2025-05-24 16:16:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 16:16:18] Checking for apptainer binary...
[2025-05-24 16:16:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 16:16:18] Running /usr/bin/apptainer --version
[2025-05-24 16:16:18] apptainer version 1.4.1-1.el9
[2025-05-24 16:16:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 16:16:18] c8-16-2.aglt2.org
[2025-05-24 16:16:18] apptainer works
[2025-05-24 16:16:18] Set ATHENA_PROC_NUMBER=8
[2025-05-24 16:16:18] Set ATHENA_CORE_NUMBER=8
[2025-05-24 16:16:18] Starting ATLAS job with PandaID=6665630817
[2025-05-24 16:16:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 18:38:08]  *** The last 200 lines of the pilot log: ***
[2025-05-24 18:38:08] 2025-05-24 22:37:40,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 18:38:08] 2025-05-24 22:37:43,349 | INFO     | monitor loop #500: job 0:6665630817 is in state 'finished'
[2025-05-24 18:38:08] 2025-05-24 22:37:43,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 18:38:08] 2025-05-24 22:37:45,959 | INFO     | monitor loop #501: job 0:6665630817 is in state 'finished'
[2025-05-24 18:38:08] 2025-05-24 22:37:45,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,293 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-24 18:38:08] 2025-05-24 22:37:47,293 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6665630817/memory_monitor_summary.json (trf name=prmon)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,293 | INFO     | extracted standard info from prmon json
[2025-05-24 18:38:08] 2025-05-24 22:37:47,294 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 18:38:08] 2025-05-24 22:37:47,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 18:38:08] 2025-05-24 22:37:47,294 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 18:38:08] 2025-05-24 22:37:47,294 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 18:38:08] 2025-05-24 22:37:47,295 | INFO     | fitting pss+swap vs Time
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | sum of square deviations: 762879063.2592596
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | sum of deviations: 13846816406.555561
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | mean x: 1748122096.074074
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | mean y: 2497245.2444444443
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | -- intersect: -31727205254.605854
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | intersect: -31727205254.605854
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | chi2: 2.2027215219767062
[2025-05-24 18:38:08] 2025-05-24 22:37:47,296 | INFO     | sum of square deviations: 681215465.7307714
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | sum of deviations: 13588264220.26924
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | mean x: 1748121943.5769231
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | mean y: 2496769.023076923
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | -- intersect: -34867443879.038795
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | intersect: -34867443879.038795
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | chi2: 2.2068068538530214
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | current chi2=2.2068068538530214 (change=-0.1854674699255249 %)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | right removable region: 129
[2025-05-24 18:38:08] 2025-05-24 22:37:47,327 | INFO     | sum of square deviations: 681209365.7307714
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | sum of deviations: -13438977609.423073
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | mean x: 1748122248.5769231
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | mean y: 2547509.9923076923
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | -- intersect: 34489706581.79596
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | intersect: 34489706581.79596
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | chi2: 0.019479334743444404
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | current chi2=0.019479334743444404 (change=99.11566965914221 %)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | sum of square deviations: 605586293.2
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | sum of deviations: -12240991389.839989
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | mean x: 1748122401.08
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | mean y: 2545089.184
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | -- intersect: 35338138877.03673
[2025-05-24 18:38:08] 2025-05-24 22:37:47,328 | INFO     | intersect: 35338138877.03673
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | chi2: 0.0191604046285519
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | current chi2=0.0191604046285519 (change=1.637274163070876 %)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | left removable region: 20
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | sum of square deviations: 401524213.0825698
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | sum of deviations: -9303211370.064219
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | mean x: 1748122523.0917432
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | mean y: 2541592.7064220184
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | -- intersect: 40506084849.132866
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | intersect: 40506084849.132866
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | chi2: 0.016971669760368686
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | -- intersect: 40506084849.132866
[2025-05-24 18:38:08] 2025-05-24 22:37:47,329 | INFO     | current memory leak: -23.17 B/s (using 109 data points, chi2=0.02)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | ..............................
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . Timing measurements:
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . get job = 0 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . initial setup = 4 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . payload setup = 54 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . stage-in = 0 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . payload execution = 8236 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . stage-out = 2 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | . log creation = 0 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,334 | INFO     | ..............................
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | 
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | job summary report
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | --------------------------------------------------
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | PanDA job id: 6665630817
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | task id: 44871837
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | errors: (none)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,452 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | pilot state: finished 
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | transexitcode: 0
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | exeerrorcode: 0
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | exeerrordiag: 
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | exitcode: 0
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | exitmsg: OK
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | cpuconsumptiontime: 28994 s
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | nevents: 400
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | neventsw: 0
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | pid: 371996
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | pgrp: 371996
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | corecount: 8
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | event service: False
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | sizes: {0: 2393568, 1: 2393767, 12: 2393767, 22: 2393795, 33: 2393823, 34: 2394085, 44: 2394241, 8296: 2421721, 8297: 2421720, 8300: 2430773, 8340: 2430887}
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | --------------------------------------------------
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | 
[2025-05-24 18:38:08] 2025-05-24 22:37:47,453 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-05-24 18:38:08] 2025-05-24 22:37:47,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | job 6665630817 has completed (purged errors)
[2025-05-24 18:38:08] 2025-05-24 22:37:47,622 | INFO     | overall cleanup function is called
[2025-05-24 18:38:08] 2025-05-24 22:37:48,199 | INFO     | PID=324736 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-24 18:38:08] 2025-05-24 22:37:48,199 | INFO     | .. there are 66 such processes running
[2025-05-24 18:38:08] 2025-05-24 22:37:48,754 | INFO     | --- collectZombieJob: --- 10, [371996]
[2025-05-24 18:38:08] 2025-05-24 22:37:48,754 | INFO     | zombie collector waiting for pid 371996
[2025-05-24 18:38:08] 2025-05-24 22:37:48,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 18:38:08] 2025-05-24 22:37:48,754 | INFO     | collected zombie processes
[2025-05-24 18:38:08] 2025-05-24 22:37:48,754 | INFO     | will attempt to kill all subprocesses of pid=371996
[2025-05-24 18:38:08] 2025-05-24 22:37:51,042 | INFO     | process IDs to be killed: [371996] (in reverse order)
[2025-05-24 18:38:08] 2025-05-24 22:37:51,775 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 18:38:08] 2025-05-24 22:37:51,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 18:38:08] 2025-05-24 22:37:51,972 | INFO     | did not find any defunct processes belonging to 371996
[2025-05-24 18:38:08] 2025-05-24 22:37:52,072 | INFO     | did not find any defunct processes belonging to 371996
[2025-05-24 18:38:08] 2025-05-24 22:37:52,073 | INFO     | ready for new job
[2025-05-24 18:38:08] 2025-05-24 22:37:52,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 18:38:08] 2025-05-24 22:37:52,096 | INFO     | **************************************
[2025-05-24 18:38:08] 2025-05-24 22:37:52,096 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 18:38:08] 2025-05-24 22:37:52,096 | INFO     | **************************************
[2025-05-24 18:38:08] 2025-05-24 22:37:52,096 | INFO     | 
[2025-05-24 18:38:08] 2025-05-24 22:37:52,131 | INFO     | architecture information:
[2025-05-24 18:38:08] 2025-05-24 22:37:52,136 | INFO     | executing command: cat /etc/os-release
[2025-05-24 18:38:08] 2025-05-24 22:37:52,192 | INFO     | cat /etc/os-release:
[2025-05-24 18:38:08] NAME="CentOS Linux"
[2025-05-24 18:38:08] VERSION="7 (Core)"
[2025-05-24 18:38:08] ID="centos"
[2025-05-24 18:38:08] ID_LIKE="rhel fedora"
[2025-05-24 18:38:08] VERSION_ID="7"
[2025-05-24 18:38:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 18:38:08] ANSI_COLOR="0;31"
[2025-05-24 18:38:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 18:38:08] HOME_URL="https://www.centos.org/"
[2025-05-24 18:38:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 18:38:08] 
[2025-05-24 18:38:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 18:38:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 18:38:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 18:38:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 18:38:08] 
[2025-05-24 18:38:08] 2025-05-24 22:37:52,192 | INFO     | **************************************
[2025-05-24 18:38:08] 2025-05-24 22:37:52,727 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | INFO     | sufficient remaining disk space (169594585088 B)
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | INFO     | update_server=False
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 18:38:08] 2025-05-24 22:37:52,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 18:38:08] 2025-05-24 22:37:52,812 | INFO     | aborting loop
[2025-05-24 18:38:08] 2025-05-24 22:37:52,812 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 18:38:08] 2025-05-24 22:37:52,812 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 18:38:08] 2025-05-24 22:37:52,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 18:38:08] 2025-05-24 22:37:52,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 18:38:08] 2025-05-24 22:37:52,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 18:38:08] 2025-05-24 22:37:53,084 | INFO     | all data control threads have been joined
[2025-05-24 18:38:08] 2025-05-24 22:37:53,257 | INFO     | all job control threads have been joined
[2025-05-24 18:38:08] 2025-05-24 22:37:53,817 | INFO     | [job] retrieve thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:53,817 | INFO     | [job] job monitor thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:53,823 | INFO     | [job] queue monitor thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:53,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 18:38:08] 2025-05-24 22:37:54,057 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,094 | INFO     | [data] control thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,148 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,265 | INFO     | [job] control thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,303 | INFO     | all payload control threads have been joined
[2025-05-24 18:38:08] 2025-05-24 22:37:54,369 | INFO     | [payload] validate_post thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,620 | INFO     | [payload] failed_post thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,680 | INFO     | [data] copytool_in thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,688 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:54,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 18:38:08] 2025-05-24 22:37:55,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:55,193 | INFO     | [job] validate thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:55,309 | INFO     | [payload] control thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:55,900 | INFO     | [data] copytool_out thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:58,850 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 18:38:08] 2025-05-24 22:37:59,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530467714880)>', '<ExcThread(monitor, started 140529970960128)>']
[2025-05-24 18:38:08] 2025-05-24 22:37:59,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 18:38:08] 2025-05-24 22:37:59,883 | INFO     | [monitor] control thread has ended
[2025-05-24 18:38:08] 2025-05-24 22:38:04,828 | INFO     | all workflow threads have been joined
[2025-05-24 18:38:08] 2025-05-24 22:38:04,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 18:38:08] 2025-05-24 22:38:04,829 | INFO     | traces error code: 0
[2025-05-24 18:38:08] 2025-05-24 22:38:04,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 18:38:08] 2025-05-24 22:38:06,549 [wrapper] ==== pilot stdout END ====
[2025-05-24 18:38:08] 2025-05-24 22:38:06,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 18:38:08] 2025-05-24 22:38:06,650 [wrapper] pilotpid: 324736
[2025-05-24 18:38:08] 2025-05-24 22:38:06,693 [wrapper] Pilot exit status: 0
[2025-05-24 18:38:08] 2025-05-24 22:38:06,838 [wrapper] pandaids: 6665630817
[2025-05-24 18:38:08] 2025-05-24 22:38:07,306 [wrapper] cleanup supervisor_pilot 3342431 324737
[2025-05-24 18:38:08] 2025-05-24 22:38:07,333 [wrapper] Test setup, not cleaning
[2025-05-24 18:38:08] 2025-05-24 22:38:07,356 [wrapper] apfmon messages muted
[2025-05-24 18:38:08] 2025-05-24 22:38:07,392 [wrapper] ==== wrapper stdout END ====
[2025-05-24 18:38:08] 2025-05-24 22:38:07,415 [wrapper] ==== wrapper stderr END ====
[2025-05-24 18:38:08]  *** Error codes and diagnostics ***
[2025-05-24 18:38:08]     "exeErrorCode": 0,
[2025-05-24 18:38:08]     "exeErrorDiag": "",
[2025-05-24 18:38:08]     "pilotErrorCode": 0,
[2025-05-24 18:38:08]     "pilotErrorDiag": "",
[2025-05-24 18:38:08]  *** Listing of results directory ***
[2025-05-24 18:38:08] total 423684
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas    495897 May 24 10:30 pilot3.tar.gz
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas      5111 May 24 10:54 queuedata.json
[2025-05-24 18:38:08] -rwx------. 1 boincer umatlas     37140 May 24 10:57 runpilot2-wrapper.sh
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas       100 May 24 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 18:38:08] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 16:16 run_atlas
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas       105 May 24 16:16 job.xml
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas 225941608 May 24 16:16 EVNT.44871834._000768.pool.root.1
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas     15093 May 24 16:16 start_atlas.sh
[2025-05-24 18:38:08] drwxrwx--x. 2 boincer umatlas      4096 May 24 16:16 shared
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas    508875 May 24 16:16 input.tar.gz
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas         0 May 24 16:16 boinc_lockfile
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas      2558 May 24 16:16 pandaJob.out
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas    990811 May 24 16:17 agis_schedconf.cvmfs.json
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas   1596740 May 24 16:17 agis_ddmendpoints.agis.ALL.json
[2025-05-24 18:38:08] drwx------. 4 boincer umatlas      4096 May 24 16:17 pilot3
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas      7160 May 24 18:30 init_data.xml
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas 202089882 May 24 18:36 HITS.44871837._019258.pool.root.1
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas       529 May 24 18:36 boinc_task_state.xml
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas      1039 May 24 18:36 memory_monitor_summary.json
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas    331185 May 24 18:37 log.44871837._019258.job.log.tgz.1
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas      7699 May 24 18:37 heartbeat.json
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas        95 May 24 18:37 pilot_heartbeat.json
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas        27 May 24 18:38 wrapper_checkpoint.txt
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas      4477 May 24 18:38 pilotlog.txt
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas    665085 May 24 18:38 log.44871837._019258.job.log.1
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas       357 May 24 18:38 output.list
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas       620 May 24 18:38 runtime_log
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas   1013760 May 24 18:38 result.tar.gz
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas      8654 May 24 18:38 runtime_log.err
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas       652 May 24 18:38 N3rLDmZU5c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFnRKDmbhbN1m.diag
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas      8192 May 24 18:38 boinc_mmap_file
[2025-05-24 18:38:08] -rw-r--r--. 1 boincer umatlas     21280 May 24 18:38 stderr.txt
[2025-05-24 18:38:08] HITS file was successfully produced:
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas 202089882 May 24 18:36 shared/HITS.pool.root.1
[2025-05-24 18:38:08]  *** Contents of shared directory: ***
[2025-05-24 18:38:08] total 419516
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas 225941608 May 24 16:16 ATLAS.root_0
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas     15093 May 24 16:16 start_atlas.sh
[2025-05-24 18:38:08] -rw-r--r--. 2 boincer umatlas    508875 May 24 16:16 input.tar.gz
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas 202089882 May 24 18:36 HITS.pool.root.1
[2025-05-24 18:38:08] -rw-------. 1 boincer umatlas   1013760 May 24 18:38 result.tar.gz
18:38:09 (293236): run_atlas exited; CPU time 29199.697922
18:38:09 (293236): called boinc_finish(0)

</stderr_txt>
]]>

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