Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:11:22 (680969): wrapper (7.7.26015): starting
10:11:22 (680969): wrapper: running run_atlas (--nthreads 4)
[2025-05-27 10:11:22] Arguments: --nthreads 4
[2025-05-27 10:11:22] Threads: 4
[2025-05-27 10:11:22] Checking for CVMFS
[2025-05-27 10:11:22] No cvmfs_config command found, will try listing directly
[2025-05-27 10:11:22] CVMFS is ok
[2025-05-27 10:11:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-27 10:11:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-27 10:11:22] Further information can be found at the LHC@home message board.
[2025-05-27 10:11:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 10:11:22] Checking for apptainer binary...
[2025-05-27 10:11:22] which: no apptainer in ((null))
[2025-05-27 10:11:22] apptainer is not installed, using version from CVMFS
[2025-05-27 10:11:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 10:11:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-05-27 10:11:22] apptainer works
[2025-05-27 10:11:22] Set ATHENA_PROC_NUMBER=4
[2025-05-27 10:11:22] Set ATHENA_CORE_NUMBER=4
[2025-05-27 10:11:22] Starting ATLAS job with PandaID=6665629835
[2025-05-27 10:11:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 14:12:18]  *** The last 200 lines of the pilot log: ***
[2025-05-27 14:12:18] 2025-05-27 12:11:58,199 | INFO     | chi2: 1.699552079126947
[2025-05-27 14:12:18] 2025-05-27 12:11:58,199 | INFO     | sum of square deviations: 3822136780.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,200 | INFO     | sum of deviations: 44621150591.99999
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | mean x: 1748340532.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | mean y: 2303459.645021645
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | -- intersect: -20408521860.02587
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | intersect: -20408521860.02587
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | chi2: 1.7002033888664685
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | current chi2=1.7002033888664685 (change=-0.03832243492391943 %)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,201 | INFO     | right removable region: 230
[2025-05-27 14:12:18] 2025-05-27 12:11:58,202 | INFO     | sum of square deviations: 3822136780.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,203 | INFO     | sum of deviations: 6422323085.000001
[2025-05-27 14:12:18] 2025-05-27 12:11:58,203 | INFO     | mean x: 1748340837.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,203 | INFO     | mean y: 2327682.445887446
[2025-05-27 14:12:18] 2025-05-27 12:11:58,203 | INFO     | -- intersect: -2935403320.9729185
[2025-05-27 14:12:18] 2025-05-27 12:11:58,203 | INFO     | intersect: -2935403320.9729185
[2025-05-27 14:12:18] 2025-05-27 12:11:58,204 | INFO     | chi2: 0.012662818896560147
[2025-05-27 14:12:18] 2025-05-27 12:11:58,204 | INFO     | current chi2=0.012662818896560147 (change=99.25493198754668 %)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,204 | INFO     | sum of square deviations: 3579276412.5
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | sum of deviations: 3772783815.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | mean x: 1748340989.5
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | mean y: 2329327.4867256638
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | -- intersect: -1840532700.5061138
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | intersect: -1840532700.5061138
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | chi2: 0.0013684075423451962
[2025-05-27 14:12:18] 2025-05-27 12:11:58,206 | INFO     | current chi2=0.0013684075423451962 (change=89.19349985557383 %)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,207 | INFO     | sum of square deviations: 3346927870.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,208 | INFO     | sum of deviations: 3967785992.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,208 | INFO     | mean x: 1748341142.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,208 | INFO     | mean y: 2329204.1719457014
[2025-05-27 14:12:18] 2025-05-27 12:11:58,208 | INFO     | -- intersect: -2070330787.8896348
[2025-05-27 14:12:18] 2025-05-27 12:11:58,208 | INFO     | intersect: -2070330787.8896348
[2025-05-27 14:12:18] 2025-05-27 12:11:58,209 | INFO     | chi2: 0.0007963255264656422
[2025-05-27 14:12:18] 2025-05-27 12:11:58,209 | INFO     | current chi2=0.0007963255264656422 (change=41.806406218655574 %)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,209 | INFO     | sum of square deviations: 3124858590.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | sum of deviations: 3761901994.500001
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | mean x: 1748341294.5
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | mean y: 2329345.087962963
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | -- intersect: -2102434250.9012764
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | intersect: -2102434250.9012764
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | chi2: 0.0007899938083861432
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | current chi2=0.0007899938083861432 (change=0.7951168045059768 %)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,211 | INFO     | left removable region: 40
[2025-05-27 14:12:18] 2025-05-27 12:11:58,212 | INFO     | sum of square deviations: 2126802667.5
[2025-05-27 14:12:18] 2025-05-27 12:11:58,213 | INFO     | sum of deviations: 3064726864.0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,213 | INFO     | mean x: 1748341721.5
[2025-05-27 14:12:18] 2025-05-27 12:11:58,213 | INFO     | mean y: 2329420.084210526
[2025-05-27 14:12:18] 2025-05-27 12:11:58,213 | INFO     | -- intersect: -2517034469.7643323
[2025-05-27 14:12:18] 2025-05-27 12:11:58,213 | INFO     | intersect: -2517034469.7643323
[2025-05-27 14:12:18] 2025-05-27 12:11:58,214 | INFO     | chi2: 0.0006741322617412863
[2025-05-27 14:12:18] 2025-05-27 12:11:58,214 | INFO     | -- intersect: -2517034469.7643323
[2025-05-27 14:12:18] 2025-05-27 12:11:58,214 | INFO     | current memory leak: 1.44 B/s (using 190 data points, chi2=0.00)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | ..............................
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . Timing measurements:
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . get job = 0 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . initial setup = 1 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . payload setup = 6 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . stage-in = 0 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . payload execution = 14392 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . stage-out = 1 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | . log creation = 0 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,215 | INFO     | ..............................
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | 
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | job summary report
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | --------------------------------------------------
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | PanDA job id: 6665629835
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | task id: 44871837
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | errors: (none)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 14:12:18] 2025-05-27 12:11:58,318 | INFO     | pilot state: finished 
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | transexitcode: 0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | exeerrorcode: 0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | exeerrordiag: 
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | exitcode: 0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | exitmsg: OK
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | cpuconsumptiontime: 55132 s
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | nevents: 400
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | neventsw: 0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | pid: 691552
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | pgrp: 691552
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | corecount: 4
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | event service: False
[2025-05-27 14:12:18] 2025-05-27 12:11:58,319 | INFO     | sizes: {0: 2404404, 1: 2405271, 5: 2405477, 12: 2405533, 14402: 2436089, 14403: 2436088, 14404: 2445235, 14406: 2445291, 14411: 2445461}
[2025-05-27 14:12:18] 2025-05-27 12:11:58,320 | INFO     | --------------------------------------------------
[2025-05-27 14:12:18] 2025-05-27 12:11:58,320 | INFO     | 
[2025-05-27 14:12:18] 2025-05-27 12:11:58,320 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-05-27 14:12:18] 2025-05-27 12:11:58,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 14:12:18] 2025-05-27 12:11:58,341 | INFO     | job 6665629835 has completed (purged errors)
[2025-05-27 14:12:18] 2025-05-27 12:11:58,342 | INFO     | overall cleanup function is called
[2025-05-27 14:12:18] 2025-05-27 12:11:59,350 | INFO     | --- collectZombieJob: --- 10, [691552]
[2025-05-27 14:12:18] 2025-05-27 12:11:59,350 | INFO     | zombie collector waiting for pid 691552
[2025-05-27 14:12:18] 2025-05-27 12:11:59,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 14:12:18] 2025-05-27 12:11:59,350 | INFO     | collected zombie processes
[2025-05-27 14:12:18] 2025-05-27 12:11:59,350 | INFO     | will attempt to kill all subprocesses of pid=691552
[2025-05-27 14:12:18] 2025-05-27 12:11:59,847 | INFO     | process IDs to be killed: [691552] (in reverse order)
[2025-05-27 14:12:18] 2025-05-27 12:11:59,962 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 14:12:18] 2025-05-27 12:11:59,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 14:12:18] 2025-05-27 12:11:59,992 | INFO     | did not find any defunct processes belonging to 691552
[2025-05-27 14:12:18] 2025-05-27 12:12:00,016 | INFO     | did not find any defunct processes belonging to 691552
[2025-05-27 14:12:18] 2025-05-27 12:12:00,016 | INFO     | ready for new job
[2025-05-27 14:12:18] 2025-05-27 12:12:00,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 14:12:18] 2025-05-27 12:12:00,019 | INFO     | **************************************
[2025-05-27 14:12:18] 2025-05-27 12:12:00,019 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 14:12:18] 2025-05-27 12:12:00,019 | INFO     | **************************************
[2025-05-27 14:12:18] 2025-05-27 12:12:00,019 | INFO     | 
[2025-05-27 14:12:18] 2025-05-27 12:12:00,023 | INFO     | architecture information:
[2025-05-27 14:12:18] 2025-05-27 12:12:00,023 | INFO     | executing command: cat /etc/os-release
[2025-05-27 14:12:18] 2025-05-27 12:12:00,039 | INFO     | cat /etc/os-release:
[2025-05-27 14:12:18] NAME="CentOS Linux"
[2025-05-27 14:12:18] VERSION="7 (Core)"
[2025-05-27 14:12:18] ID="centos"
[2025-05-27 14:12:18] ID_LIKE="rhel fedora"
[2025-05-27 14:12:18] VERSION_ID="7"
[2025-05-27 14:12:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 14:12:18] ANSI_COLOR="0;31"
[2025-05-27 14:12:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 14:12:18] HOME_URL="https://www.centos.org/"
[2025-05-27 14:12:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 14:12:18] 
[2025-05-27 14:12:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 14:12:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 14:12:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 14:12:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 14:12:18] 
[2025-05-27 14:12:18] 2025-05-27 12:12:00,039 | INFO     | **************************************
[2025-05-27 14:12:18] 2025-05-27 12:12:00,153 | INFO     | PID=684633 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-27 14:12:18] 2025-05-27 12:12:00,153 | INFO     | .. there are 15 such processes running
[2025-05-27 14:12:18] 2025-05-27 12:12:00,542 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-05-27 14:12:18] 2025-05-27 12:12:00,557 | INFO     | sufficient remaining disk space (671716737024 B)
[2025-05-27 14:12:18] 2025-05-27 12:12:00,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 14:12:18] 2025-05-27 12:12:00,557 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 14:12:18] 2025-05-27 12:12:00,557 | INFO     | update_server=False
[2025-05-27 14:12:18] 2025-05-27 12:12:00,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 14:12:18] 2025-05-27 12:12:00,558 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-27 14:12:18] 2025-05-27 12:12:00,558 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 14:12:18] 2025-05-27 12:12:00,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 14:12:18] 2025-05-27 12:12:00,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 14:12:18] 2025-05-27 12:12:00,970 | INFO     | all job control threads have been joined
[2025-05-27 14:12:18] 2025-05-27 12:12:01,040 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-27 14:12:18] 2025-05-27 12:12:01,041 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-27 14:12:18] 2025-05-27 12:12:01,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 14:12:18] 2025-05-27 12:12:01,041 | INFO     | will abort loop
[2025-05-27 14:12:18] 2025-05-27 12:12:01,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 14:12:18] 2025-05-27 12:12:01,473 | INFO     | all payload control threads have been joined
[2025-05-27 14:12:18] 2025-05-27 12:12:01,484 | INFO     | all data control threads have been joined
[2025-05-27 14:12:18] 2025-05-27 12:12:01,562 | INFO     | [job] retrieve thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:01,677 | INFO     | [payload] validate_post thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:01,926 | INFO     | [payload] failed_post thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:01,974 | INFO     | [job] control thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:01,995 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:01,998 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,046 | INFO     | [job] job monitor thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,075 | INFO     | [job] validate thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,471 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,471 | INFO     | [data] copytool_in thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,477 | INFO     | [payload] control thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:02,489 | INFO     | [data] control thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:03,075 | INFO     | [data] copytool_out thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:03,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 14:12:18] 2025-05-27 12:12:03,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 14:12:18] 2025-05-27 12:12:04,332 | INFO     | [job] queue monitor thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:07,170 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:11,372 | INFO     | job.realtimelogging is not enabled
[2025-05-27 14:12:18] 2025-05-27 12:12:12,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 14:12:18] 2025-05-27 12:12:13,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22864222680896)>', '<ExcThread(monitor, started 22863778129664)>']
[2025-05-27 14:12:18] 2025-05-27 12:12:14,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 14:12:18] 2025-05-27 12:12:14,624 | INFO     | [monitor] control thread has ended
[2025-05-27 14:12:18] 2025-05-27 12:12:18,676 | INFO     | all workflow threads have been joined
[2025-05-27 14:12:18] 2025-05-27 12:12:18,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 14:12:18] 2025-05-27 12:12:18,677 | INFO     | traces error code: 0
[2025-05-27 14:12:18] 2025-05-27 12:12:18,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 14:12:18] 2025-05-27 12:12:18,825 [wrapper] ==== pilot stdout END ====
[2025-05-27 14:12:18] 2025-05-27 12:12:18,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 14:12:18] 2025-05-27 12:12:18,830 [wrapper] pilotpid: 684633
[2025-05-27 14:12:18] 2025-05-27 12:12:18,833 [wrapper] Pilot exit status: 0
[2025-05-27 14:12:18] 2025-05-27 12:12:18,843 [wrapper] pandaids: 6665629835
[2025-05-27 14:12:18] 2025-05-27 12:12:18,902 [wrapper] cleanup supervisor_pilot 1287510 684634
[2025-05-27 14:12:18] 2025-05-27 12:12:18,905 [wrapper] Test setup, not cleaning
[2025-05-27 14:12:18] 2025-05-27 12:12:18,908 [wrapper] apfmon messages muted
[2025-05-27 14:12:18] 2025-05-27 12:12:18,910 [wrapper] ==== wrapper stdout END ====
[2025-05-27 14:12:18] 2025-05-27 12:12:18,912 [wrapper] ==== wrapper stderr END ====
[2025-05-27 14:12:18]  *** Error codes and diagnostics ***
[2025-05-27 14:12:18]     "exeErrorCode": 0,
[2025-05-27 14:12:18]     "exeErrorDiag": "",
[2025-05-27 14:12:18]     "pilotErrorCode": 0,
[2025-05-27 14:12:18]     "pilotErrorDiag": "",
[2025-05-27 14:12:18]  *** Listing of results directory ***
[2025-05-27 14:12:18] total 424784
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc    495897 May 24 15:46 pilot3.tar.gz
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc      5111 May 24 16:11 queuedata.json
[2025-05-27 14:12:18] -rwx------ 1 boinc boinc     37140 May 24 16:12 runpilot2-wrapper.sh
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc       100 May 27 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 14:12:18] -rwxr-xr-x 1 boinc boinc      7986 May 27 10:11 run_atlas
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc       105 May 27 10:11 job.xml
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc      6636 May 27 10:11 init_data.xml
[2025-05-27 14:12:18] -rw-r--r-- 2 boinc boinc 227219792 May 27 10:11 EVNT.44871834._000745.pool.root.1
[2025-05-27 14:12:18] -rw-r--r-- 2 boinc boinc     15093 May 27 10:11 start_atlas.sh
[2025-05-27 14:12:18] drwxrwx--x 2 boinc boinc      4096 May 27 10:11 shared
[2025-05-27 14:12:18] -rw-r--r-- 2 boinc boinc    508878 May 27 10:11 input.tar.gz
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc         0 May 27 10:11 boinc_lockfile
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc      2558 May 27 10:11 pandaJob.out
[2025-05-27 14:12:18] -rw------- 1 boinc boinc    990418 May 27 10:11 agis_schedconf.cvmfs.json
[2025-05-27 14:12:18] drwx------ 4 boinc boinc      4096 May 27 10:11 pilot3
[2025-05-27 14:12:18] -rw------- 1 boinc boinc 200577564 May 27 14:11 HITS.44871837._018681.pool.root.1
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc       531 May 27 14:11 boinc_task_state.xml
[2025-05-27 14:12:18] -rw------- 1 boinc boinc        95 May 27 14:11 pilot_heartbeat.json
[2025-05-27 14:12:18] -rw------- 1 boinc boinc      1031 May 27 14:11 memory_monitor_summary.json
[2025-05-27 14:12:18] -rw------- 1 boinc boinc   1603667 May 27 14:11 agis_ddmendpoints.agis.ALL.json
[2025-05-27 14:12:18] -rw------- 1 boinc boinc    333445 May 27 14:11 log.44871837._018681.job.log.tgz.1
[2025-05-27 14:12:18] -rw------- 1 boinc boinc      7717 May 27 14:11 heartbeat.json
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc      8192 May 27 14:12 boinc_mmap_file
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc        28 May 27 14:12 wrapper_checkpoint.txt
[2025-05-27 14:12:18] -rw------- 1 boinc boinc      5139 May 27 14:12 pilotlog.txt
[2025-05-27 14:12:18] -rw------- 1 boinc boinc   1338353 May 27 14:12 log.44871837._018681.job.log.1
[2025-05-27 14:12:18] -rw------- 1 boinc boinc       357 May 27 14:12 output.list
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc       620 May 27 14:12 runtime_log
[2025-05-27 14:12:18] -rw------- 1 boinc boinc   1689600 May 27 14:12 result.tar.gz
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc      9026 May 27 14:12 runtime_log.err
[2025-05-27 14:12:18] -rw------- 1 boinc boinc       665 May 27 14:12 fTRNDmfm4c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmfsMKDmgD75Ao.diag
[2025-05-27 14:12:18] -rw-r--r-- 1 boinc boinc     20772 May 27 14:12 stderr.txt
[2025-05-27 14:12:18] HITS file was successfully produced:
[2025-05-27 14:12:18] -rw------- 1 boinc boinc 200577564 May 27 14:11 shared/HITS.pool.root.1
[2025-05-27 14:12:18]  *** Contents of shared directory: ***
[2025-05-27 14:12:19] total 419948
[2025-05-27 14:12:19] -rw-r--r-- 2 boinc boinc 227219792 May 27 10:11 ATLAS.root_0
[2025-05-27 14:12:19] -rw-r--r-- 2 boinc boinc     15093 May 27 10:11 start_atlas.sh
[2025-05-27 14:12:19] -rw-r--r-- 2 boinc boinc    508878 May 27 10:11 input.tar.gz
[2025-05-27 14:12:19] -rw------- 1 boinc boinc 200577564 May 27 14:11 HITS.pool.root.1
[2025-05-27 14:12:19] -rw------- 1 boinc boinc   1689600 May 27 14:12 result.tar.gz
14:12:20 (680969): run_atlas exited; CPU time 55617.192259
14:12:20 (680969): called boinc_finish(0)

</stderr_txt>
]]>

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