Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:32:34 (2675907): wrapper (7.7.26015): starting
12:32:34 (2675907): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 12:32:34] Arguments: --nthreads 8
[2025-05-24 12:32:34] Threads: 8
[2025-05-24 12:32:34] Checking for CVMFS
[2025-05-24 12:32:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 12:32:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 12:32:35] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 12:32:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 12:32:36] 2.12.6.0 2000804 7658 282860 146373 2 667 27351440 32935936 24920 16776704 0 32175068 99.570 36856610 24201 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 12:32:36] CVMFS is ok
[2025-05-24 12:32:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 12:32:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 12:32:36] Further information can be found at the LHC@home message board.
[2025-05-24 12:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 12:32:36] Checking for apptainer binary...
[2025-05-24 12:32:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 12:32:36] Running /usr/bin/apptainer --version
[2025-05-24 12:32:36] apptainer version 1.4.1-1.el9
[2025-05-24 12:32:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 12:32:36] c6-12-27-3.aglt2.org
[2025-05-24 12:32:36] apptainer works
[2025-05-24 12:32:36] Set ATHENA_PROC_NUMBER=8
[2025-05-24 12:32:36] Set ATHENA_CORE_NUMBER=8
[2025-05-24 12:32:36] Starting ATLAS job with PandaID=6665278093
[2025-05-24 12:32:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:40:06 (2675907): BOINC client no longer exists - exiting
15:40:06 (2675907): timer handler: client dead, exiting
15:45:28 (3981181): wrapper (7.7.26015): starting
15:45:28 (3981181): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 15:45:28] Arguments: --nthreads 8
[2025-05-24 15:45:28] Threads: 8
[2025-05-24 15:45:28] This job has been restarted, cleaning up previous attempt
[2025-05-24 15:45:28] Checking for CVMFS
[2025-05-24 15:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 15:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 15:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 15:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 15:45:28] 2.12.6.0 2000804 7851 284296 146377 2 661 28459022 32935937 24057 16776704 0 33290614 99.583 37125825 24192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 15:45:28] CVMFS is ok
[2025-05-24 15:45:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 15:45:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 15:45:28] Further information can be found at the LHC@home message board.
[2025-05-24 15:45:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 15:45:28] Checking for apptainer binary...
[2025-05-24 15:45:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 15:45:28] Running /usr/bin/apptainer --version
[2025-05-24 15:45:28] apptainer version 1.4.1-1.el9
[2025-05-24 15:45:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 15:45:28] c6-12-27-3.aglt2.org
[2025-05-24 15:45:28] apptainer works
[2025-05-24 15:45:28] Set ATHENA_PROC_NUMBER=8
[2025-05-24 15:45:28] Set ATHENA_CORE_NUMBER=8
[2025-05-24 15:45:28] Starting ATLAS job with PandaID=6665278093
[2025-05-24 15:45:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 22:17:41]  *** The last 200 lines of the pilot log: ***
[2025-05-24 22:17:41] 2025-05-25 02:17:25,250 | INFO     | extracted standard info from prmon json
[2025-05-24 22:17:41] 2025-05-25 02:17:25,250 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 22:17:41] 2025-05-25 02:17:25,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 22:17:41] 2025-05-25 02:17:25,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 22:17:41] 2025-05-25 02:17:25,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 22:17:41] 2025-05-25 02:17:25,296 | INFO     | fitting pss+swap vs Time
[2025-05-24 22:17:41] 2025-05-25 02:17:25,297 | INFO     | sum of square deviations: 17694843370.015617
[2025-05-24 22:17:41] 2025-05-25 02:17:25,309 | INFO     | sum of deviations: 62805107391.65973
[2025-05-24 22:17:41] 2025-05-25 02:17:25,309 | INFO     | mean x: 1748127691.238961
[2025-05-24 22:17:41] 2025-05-25 02:17:25,309 | INFO     | mean y: 2123059.4493506495
[2025-05-24 22:17:41] 2025-05-25 02:17:25,309 | INFO     | -- intersect: -6202585571.577104
[2025-05-24 22:17:41] 2025-05-25 02:17:25,309 | INFO     | intersect: -6202585571.577104
[2025-05-24 22:17:41] 2025-05-25 02:17:25,310 | INFO     | chi2: 2.6626133911271124
[2025-05-24 22:17:41] 2025-05-25 02:17:25,311 | INFO     | sum of square deviations: 17014356344.726246
[2025-05-24 22:17:41] 2025-05-25 02:17:25,318 | INFO     | sum of deviations: 83850962925.84744
[2025-05-24 22:17:41] 2025-05-25 02:17:25,319 | INFO     | mean x: 1748127538.7421052
[2025-05-24 22:17:41] 2025-05-25 02:17:25,319 | INFO     | mean y: 2127722.8657894735
[2025-05-24 22:17:41] 2025-05-25 02:17:25,319 | INFO     | -- intersect: -8613077840.6495
[2025-05-24 22:17:41] 2025-05-25 02:17:25,319 | INFO     | intersect: -8613077840.6495
[2025-05-24 22:17:41] 2025-05-25 02:17:25,324 | INFO     | chi2: 1.8955374184332854
[2025-05-24 22:17:41] 2025-05-25 02:17:25,324 | INFO     | current chi2=1.8955374184332854 (change=28.809138241775145 %)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,324 | INFO     | sum of square deviations: 16351544069.429344
[2025-05-24 22:17:41] 2025-05-25 02:17:25,336 | INFO     | sum of deviations: 80066436781.25598
[2025-05-24 22:17:41] 2025-05-25 02:17:25,336 | INFO     | mean x: 1748127386.2453334
[2025-05-24 22:17:41] 2025-05-25 02:17:25,337 | INFO     | mean y: 2126851.432
[2025-05-24 22:17:41] 2025-05-25 02:17:25,337 | INFO     | -- intersect: -8557696628.362404
[2025-05-24 22:17:41] 2025-05-25 02:17:25,337 | INFO     | intersect: -8557696628.362404
[2025-05-24 22:17:41] 2025-05-25 02:17:25,337 | INFO     | chi2: 1.8950004632012465
[2025-05-24 22:17:41] 2025-05-25 02:17:25,337 | INFO     | current chi2=1.8950004632012465 (change=0.028327334866472976 %)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,338 | INFO     | right removable region: 374
[2025-05-24 22:17:41] 2025-05-25 02:17:25,338 | INFO     | sum of square deviations: 17014300224.726238
[2025-05-24 22:17:41] 2025-05-25 02:17:25,364 | INFO     | sum of deviations: -1228026559.2421074
[2025-05-24 22:17:41] 2025-05-25 02:17:25,364 | INFO     | mean x: 1748127843.7421052
[2025-05-24 22:17:41] 2025-05-25 02:17:25,364 | INFO     | mean y: 2137356.252631579
[2025-05-24 22:17:41] 2025-05-25 02:17:25,364 | INFO     | -- intersect: 128310480.78385122
[2025-05-24 22:17:41] 2025-05-25 02:17:25,364 | INFO     | intersect: 128310480.78385122
[2025-05-24 22:17:41] 2025-05-25 02:17:25,365 | INFO     | chi2: 0.9586378590228749
[2025-05-24 22:17:41] 2025-05-25 02:17:25,365 | INFO     | current chi2=0.9586378590228749 (change=63.99635552733874 %)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,369 | INFO     | sum of square deviations: 16351501367.877365
[2025-05-24 22:17:41] 2025-05-25 02:17:25,380 | INFO     | sum of deviations: -8439080522.424
[2025-05-24 22:17:41] 2025-05-25 02:17:25,381 | INFO     | mean x: 1748127996.2373333
[2025-05-24 22:17:41] 2025-05-25 02:17:25,381 | INFO     | mean y: 2139000.016
[2025-05-24 22:17:41] 2025-05-25 02:17:25,381 | INFO     | -- intersect: 904355413.7779891
[2025-05-24 22:17:41] 2025-05-25 02:17:25,381 | INFO     | intersect: 904355413.7779891
[2025-05-24 22:17:41] 2025-05-25 02:17:25,431 | INFO     | chi2: 0.9036432907520097
[2025-05-24 22:17:41] 2025-05-25 02:17:25,431 | INFO     | current chi2=0.9036432907520097 (change=5.736740704870594 %)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,431 | INFO     | left removable region: 20
[2025-05-24 22:17:41] 2025-05-25 02:17:25,432 | INFO     | sum of square deviations: 13755513095.966015
[2025-05-24 22:17:41] 2025-05-25 02:17:25,479 | INFO     | sum of deviations: 11258888015.237282
[2025-05-24 22:17:41] 2025-05-25 02:17:25,479 | INFO     | mean x: 1748127965.7288136
[2025-05-24 22:17:41] 2025-05-25 02:17:25,479 | INFO     | mean y: 2142700.8983050846
[2025-05-24 22:17:41] 2025-05-25 02:17:25,479 | INFO     | -- intersect: -1428700108.4635112
[2025-05-24 22:17:41] 2025-05-25 02:17:25,479 | INFO     | intersect: -1428700108.4635112
[2025-05-24 22:17:41] 2025-05-25 02:17:25,480 | INFO     | chi2: 0.11731582424362298
[2025-05-24 22:17:41] 2025-05-25 02:17:25,480 | INFO     | -- intersect: -1428700108.4635112
[2025-05-24 22:17:41] 2025-05-25 02:17:25,480 | INFO     | current memory leak: 0.82 B/s (using 354 data points, chi2=0.12)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,481 | INFO     | ..............................
[2025-05-24 22:17:41] 2025-05-25 02:17:25,481 | INFO     | . Timing measurements:
[2025-05-24 22:17:41] 2025-05-25 02:17:25,481 | INFO     | . get job = 0 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,481 | INFO     | . initial setup = 2 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,481 | INFO     | . payload setup = 8 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,482 | INFO     | . stage-in = 0 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,482 | INFO     | . payload execution = 23450 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,482 | INFO     | . stage-out = 5 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,482 | INFO     | . log creation = 0 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,482 | INFO     | ..............................
[2025-05-24 22:17:41] 2025-05-25 02:17:25,742 | INFO     | 
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | job summary report
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | --------------------------------------------------
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | PanDA job id: 6665278093
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | task id: 44871837
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | errors: (none)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | pilot state: finished 
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | transexitcode: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | exeerrorcode: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | exeerrordiag: 
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | exitcode: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | exitmsg: OK
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | cpuconsumptiontime: 58934 s
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | nevents: 400
[2025-05-24 22:17:41] 2025-05-25 02:17:25,743 | INFO     | neventsw: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | pid: 4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | pgrp: 4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | corecount: 8
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | event service: False
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | sizes: {0: 2393565, 1: 2393764, 6: 2393970, 12: 2393998, 23463: 2428284, 23470: 2437225, 23471: 2437409, 23486: 2437579}
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | --------------------------------------------------
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | 
[2025-05-24 22:17:41] 2025-05-25 02:17:25,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 22:17:41] 2025-05-25 02:17:25,837 | INFO     | job 6665278093 has completed (purged errors)
[2025-05-24 22:17:41] 2025-05-25 02:17:25,838 | INFO     | overall cleanup function is called
[2025-05-24 22:17:41] 2025-05-25 02:17:26,847 | INFO     | --- collectZombieJob: --- 10, [4044129]
[2025-05-24 22:17:41] 2025-05-25 02:17:26,847 | INFO     | zombie collector waiting for pid 4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:26,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 22:17:41] 2025-05-25 02:17:26,847 | INFO     | collected zombie processes
[2025-05-24 22:17:41] 2025-05-25 02:17:26,847 | INFO     | will attempt to kill all subprocesses of pid=4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:27,545 | INFO     | process IDs to be killed: [4044129] (in reverse order)
[2025-05-24 22:17:41] 2025-05-25 02:17:27,802 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 22:17:41] 2025-05-25 02:17:27,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 22:17:41] 2025-05-25 02:17:27,825 | INFO     | did not find any defunct processes belonging to 4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:27,902 | INFO     | did not find any defunct processes belonging to 4044129
[2025-05-24 22:17:41] 2025-05-25 02:17:27,904 | INFO     | ready for new job
[2025-05-24 22:17:41] 2025-05-25 02:17:27,904 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 22:17:41] 2025-05-25 02:17:27,908 | INFO     | **************************************
[2025-05-24 22:17:41] 2025-05-25 02:17:27,908 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 22:17:41] 2025-05-25 02:17:27,908 | INFO     | **************************************
[2025-05-24 22:17:41] 2025-05-25 02:17:27,908 | INFO     | 
[2025-05-24 22:17:41] 2025-05-25 02:17:27,914 | INFO     | architecture information:
[2025-05-24 22:17:41] 2025-05-25 02:17:27,915 | INFO     | executing command: cat /etc/os-release
[2025-05-24 22:17:41] 2025-05-25 02:17:27,933 | INFO     | cat /etc/os-release:
[2025-05-24 22:17:41] NAME="CentOS Linux"
[2025-05-24 22:17:41] VERSION="7 (Core)"
[2025-05-24 22:17:41] ID="centos"
[2025-05-24 22:17:41] ID_LIKE="rhel fedora"
[2025-05-24 22:17:41] VERSION_ID="7"
[2025-05-24 22:17:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 22:17:41] ANSI_COLOR="0;31"
[2025-05-24 22:17:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 22:17:41] HOME_URL="https://www.centos.org/"
[2025-05-24 22:17:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 22:17:41] 
[2025-05-24 22:17:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 22:17:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 22:17:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 22:17:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 22:17:41] 
[2025-05-24 22:17:41] 2025-05-25 02:17:27,933 | INFO     | **************************************
[2025-05-24 22:17:41] 2025-05-25 02:17:28,438 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-24 22:17:41] 2025-05-25 02:17:28,509 | INFO     | sufficient remaining disk space (94062510080 B)
[2025-05-24 22:17:41] 2025-05-25 02:17:28,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 22:17:41] 2025-05-25 02:17:28,510 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 22:17:41] 2025-05-25 02:17:28,510 | INFO     | update_server=False
[2025-05-24 22:17:41] 2025-05-25 02:17:28,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 22:17:41] 2025-05-25 02:17:28,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 22:17:41] 2025-05-25 02:17:28,726 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 22:17:41] 2025-05-25 02:17:28,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 22:17:41] 2025-05-25 02:17:28,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 22:17:41] 2025-05-25 02:17:28,743 | INFO     | all job control threads have been joined
[2025-05-24 22:17:41] 2025-05-25 02:17:28,801 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-24 22:17:41] 2025-05-25 02:17:28,801 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-24 22:17:41] 2025-05-25 02:17:28,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 22:17:41] 2025-05-25 02:17:28,801 | INFO     | will abort loop
[2025-05-24 22:17:41] 2025-05-25 02:17:29,193 | INFO     | all payload control threads have been joined
[2025-05-24 22:17:41] 2025-05-25 02:17:29,516 | INFO     | [job] retrieve thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:29,574 | INFO     | all data control threads have been joined
[2025-05-24 22:17:41] 2025-05-25 02:17:29,628 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:29,749 | INFO     | [job] control thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:29,807 | INFO     | [job] job monitor thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:29,960 | INFO     | [job] validate thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,199 | INFO     | [payload] control thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,255 | INFO     | [payload] validate_post thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,255 | INFO     | [payload] failed_post thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,460 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,460 | INFO     | [data] copytool_in thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,519 | INFO     | [data] copytool_out thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 22:17:41] 2025-05-25 02:17:30,580 | INFO     | [data] control thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:30,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 22:17:41] 2025-05-25 02:17:30,866 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:31,782 | INFO     | [job] queue monitor thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:34,530 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 22:17:41] 2025-05-25 02:17:35,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721609525056)>', '<ExcThread(monitor, started 139720990390016)>']
[2025-05-24 22:17:41] 2025-05-25 02:17:36,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 22:17:41] 2025-05-25 02:17:36,774 | INFO     | [monitor] control thread has ended
[2025-05-24 22:17:41] 2025-05-25 02:17:40,896 | INFO     | all workflow threads have been joined
[2025-05-24 22:17:41] 2025-05-25 02:17:40,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 22:17:41] 2025-05-25 02:17:40,896 | INFO     | traces error code: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:40,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 22:17:41] 2025-05-25 02:17:41,193 [wrapper] ==== pilot stdout END ====
[2025-05-24 22:17:41] 2025-05-25 02:17:41,196 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 22:17:41] 2025-05-25 02:17:41,198 [wrapper] pilotpid: 4003671
[2025-05-24 22:17:41] 2025-05-25 02:17:41,200 [wrapper] Pilot exit status: 0
[2025-05-24 22:17:41] 2025-05-25 02:17:41,211 [wrapper] pandaids: 6665278093 6665278093
[2025-05-24 22:17:41] 2025-05-25 02:17:41,317 [wrapper] cleanup supervisor_pilot 2557403 4003673
[2025-05-24 22:17:41] 2025-05-25 02:17:41,325 [wrapper] Test setup, not cleaning
[2025-05-24 22:17:41] 2025-05-25 02:17:41,329 [wrapper] apfmon messages muted
[2025-05-24 22:17:41] 2025-05-25 02:17:41,332 [wrapper] ==== wrapper stdout END ====
[2025-05-24 22:17:41] 2025-05-25 02:17:41,335 [wrapper] ==== wrapper stderr END ====
[2025-05-24 22:17:41]  *** Error codes and diagnostics ***
[2025-05-24 22:17:41]     "exeErrorCode": 0,
[2025-05-24 22:17:41]     "exeErrorDiag": "",
[2025-05-24 22:17:41]     "pilotErrorCode": 0,
[2025-05-24 22:17:41]     "pilotErrorDiag": "",
[2025-05-24 22:17:41]  *** Listing of results directory ***
[2025-05-24 22:17:41] total 640404
[2025-05-24 22:17:41] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas    495897 May 24 03:04 pilot3.tar.gz
[2025-05-24 22:17:41] -rwx------. 1 boincer umatlas     37140 May 24 03:10 runpilot2-wrapper.sh
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas      5111 May 24 03:10 queuedata.json
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas       100 May 24 12:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 22:17:41] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 12:32 run_atlas
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas       105 May 24 12:32 job.xml
[2025-05-24 22:17:41] -rw-r--r--. 3 boincer umatlas 223137210 May 24 12:32 EVNT.44871834._000375.pool.root.1
[2025-05-24 22:17:41] -rw-r--r--. 3 boincer umatlas 223137210 May 24 12:32 ATLAS.root_0
[2025-05-24 22:17:41] -rw-r--r--. 2 boincer umatlas     15093 May 24 12:32 start_atlas.sh
[2025-05-24 22:17:41] drwxrwx--x. 2 boincer umatlas      4096 May 24 12:32 shared
[2025-05-24 22:17:41] -rw-r--r--. 2 boincer umatlas    508881 May 24 12:32 input.tar.gz
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas         0 May 24 12:32 boinc_lockfile
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas      2557 May 24 15:45 pandaJob.out
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas    988564 May 24 15:45 agis_schedconf.cvmfs.json
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas      6861 May 24 22:10 init_data.xml
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas 201127124 May 24 22:16 HITS.44871837._009371.pool.root.1
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas       532 May 24 22:16 boinc_task_state.xml
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas      1042 May 24 22:16 memory_monitor_summary.json
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas   1596740 May 24 22:17 agis_ddmendpoints.agis.ALL.json
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas    476353 May 24 22:17 log.44871837._009371.job.log.tgz.1
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas        96 May 24 22:17 pilot_heartbeat.json
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas      7723 May 24 22:17 heartbeat.json
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas      8192 May 24 22:17 boinc_mmap_file
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas        29 May 24 22:17 wrapper_checkpoint.txt
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas      4539 May 24 22:17 pilotlog.txt
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas   1792938 May 24 22:17 log.44871837._009371.job.log.1
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas       357 May 24 22:17 output.list
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas       620 May 24 22:17 runtime_log
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas   2283520 May 24 22:17 result.tar.gz
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas       783 May 24 22:17 yluNDmfCyc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgAQKDmvwEbMo.diag
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas      8755 May 24 22:17 runtime_log.err
[2025-05-24 22:17:41] -rw-r--r--. 1 boincer umatlas     23149 May 24 22:17 stderr.txt
[2025-05-24 22:17:41] HITS file was successfully produced:
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas 201127124 May 24 22:16 shared/HITS.pool.root.1
[2025-05-24 22:17:41]  *** Contents of shared directory: ***
[2025-05-24 22:17:41] total 417080
[2025-05-24 22:17:41] -rw-r--r--. 3 boincer umatlas 223137210 May 24 12:32 ATLAS.root_0
[2025-05-24 22:17:41] -rw-r--r--. 2 boincer umatlas     15093 May 24 12:32 start_atlas.sh
[2025-05-24 22:17:41] -rw-r--r--. 2 boincer umatlas    508881 May 24 12:32 input.tar.gz
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas 201127124 May 24 22:16 HITS.pool.root.1
[2025-05-24 22:17:41] -rw-------. 1 boincer umatlas   2283520 May 24 22:17 result.tar.gz
22:17:43 (3981181): run_atlas exited; CPU time 60198.497281
22:17:43 (3981181): called boinc_finish(0)

</stderr_txt>
]]>

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