Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:12:21 (2518595): wrapper (7.7.26015): starting
12:12:21 (2518595): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 12:12:21] Arguments: --nthreads 8
[2025-05-24 12:12:21] Threads: 8
[2025-05-24 12:12:21] Checking for CVMFS
[2025-05-24 12:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 12:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 12:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 12:12:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 12:12:23] 2.12.6.0 2000804 7638 262260 146372 2 299 27338703 32935936 23403 16776704 0 31988707 99.567 36855240 24201 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 12:12:23] CVMFS is ok
[2025-05-24 12:12:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 12:12:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 12:12:23] Further information can be found at the LHC@home message board.
[2025-05-24 12:12:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 12:12:23] Checking for apptainer binary...
[2025-05-24 12:12:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 12:12:23] Running /usr/bin/apptainer --version
[2025-05-24 12:12:23] apptainer version 1.4.1-1.el9
[2025-05-24 12:12:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 12:12:23] c6-12-27-3.aglt2.org
[2025-05-24 12:12:23] apptainer works
[2025-05-24 12:12:23] Set ATHENA_PROC_NUMBER=8
[2025-05-24 12:12:23] Set ATHENA_CORE_NUMBER=8
[2025-05-24 12:12:24] Starting ATLAS job with PandaID=6665381043
[2025-05-24 12:12:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:40:06 (2518595): BOINC client no longer exists - exiting
15:40:06 (2518595): timer handler: client dead, exiting
15:45:28 (3981174): wrapper (7.7.26015): starting
15:45:28 (3981174): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 15:45:28] Arguments: --nthreads 8
[2025-05-24 15:45:28] Threads: 8
[2025-05-24 15:45:28] This job has been restarted, cleaning up previous attempt
[2025-05-24 15:45:28] Checking for CVMFS
[2025-05-24 15:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 15:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 15:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 15:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 15:45:28] 2.12.6.0 2000804 7851 284296 146377 2 661 28459022 32935937 24057 16776704 0 33290614 99.583 37125825 24192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 15:45:28] CVMFS is ok
[2025-05-24 15:45:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 15:45:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 15:45:28] Further information can be found at the LHC@home message board.
[2025-05-24 15:45:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 15:45:28] Checking for apptainer binary...
[2025-05-24 15:45:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 15:45:28] Running /usr/bin/apptainer --version
[2025-05-24 15:45:28] apptainer version 1.4.1-1.el9
[2025-05-24 15:45:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 15:45:28] c6-12-27-3.aglt2.org
[2025-05-24 15:45:28] apptainer works
[2025-05-24 15:45:28] Set ATHENA_PROC_NUMBER=8
[2025-05-24 15:45:28] Set ATHENA_CORE_NUMBER=8
[2025-05-24 15:45:28] Starting ATLAS job with PandaID=6665381043
[2025-05-24 15:45:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 20:32:26]  *** The last 200 lines of the pilot log: ***
[2025-05-24 20:32:26] 2025-05-25 00:32:08,261 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 20:32:26] 2025-05-25 00:32:08,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 20:32:26] 2025-05-25 00:32:08,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 20:32:26] 2025-05-25 00:32:08,276 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 20:32:26] 2025-05-25 00:32:08,324 | INFO     | fitting pss+swap vs Time
[2025-05-24 20:32:26] 2025-05-25 00:32:08,325 | INFO     | sum of square deviations: 6879712920.320262
[2025-05-24 20:32:26] 2025-05-25 00:32:08,327 | INFO     | sum of deviations: 31809632730.305984
[2025-05-24 20:32:26] 2025-05-25 00:32:08,327 | INFO     | mean x: 1748124519.2206407
[2025-05-24 20:32:26] 2025-05-25 00:32:08,327 | INFO     | mean y: 2104202.1886120997
[2025-05-24 20:32:26] 2025-05-25 00:32:08,327 | INFO     | -- intersect: -8080674769.446545
[2025-05-24 20:32:26] 2025-05-25 00:32:08,353 | INFO     | intersect: -8080674769.446545
[2025-05-24 20:32:26] 2025-05-25 00:32:08,354 | INFO     | chi2: 3.3903900847864636
[2025-05-24 20:32:26] 2025-05-25 00:32:08,354 | INFO     | sum of square deviations: 6518945133.518088
[2025-05-24 20:32:26] 2025-05-25 00:32:08,378 | INFO     | sum of deviations: 65394424781.43839
[2025-05-24 20:32:26] 2025-05-25 00:32:08,379 | INFO     | mean x: 1748124366.7210145
[2025-05-24 20:32:26] 2025-05-25 00:32:08,379 | INFO     | mean y: 2118270.1485507246
[2025-05-24 20:32:26] 2025-05-25 00:32:08,379 | INFO     | -- intersect: -17534091203.42974
[2025-05-24 20:32:26] 2025-05-25 00:32:08,379 | INFO     | intersect: -17534091203.42974
[2025-05-24 20:32:26] 2025-05-25 00:32:08,379 | INFO     | chi2: 1.877670302242939
[2025-05-24 20:32:26] 2025-05-25 00:32:08,380 | INFO     | current chi2=1.877670302242939 (change=44.6178682898903 %)
[2025-05-24 20:32:26] 2025-05-25 00:32:08,380 | INFO     | sum of square deviations: 6171031633.269349
[2025-05-24 20:32:26] 2025-05-25 00:32:08,403 | INFO     | sum of deviations: 64299116106.33584
[2025-05-24 20:32:26] 2025-05-25 00:32:08,403 | INFO     | mean x: 1748124214.2250922
[2025-05-24 20:32:26] 2025-05-25 00:32:08,403 | INFO     | mean y: 2117789.5682656826
[2025-05-24 20:32:26] 2025-05-25 00:32:08,404 | INFO     | -- intersect: -18212477192.05014
[2025-05-24 20:32:26] 2025-05-25 00:32:08,404 | INFO     | intersect: -18212477192.05014
[2025-05-24 20:32:26] 2025-05-25 00:32:08,404 | INFO     | chi2: 1.8763292712074031
[2025-05-24 20:32:26] 2025-05-25 00:32:08,404 | INFO     | current chi2=1.8763292712074031 (change=0.07141994171895086 %)
[2025-05-24 20:32:26] 2025-05-25 00:32:08,404 | INFO     | right removable region: 270
[2025-05-24 20:32:26] 2025-05-25 00:32:08,405 | INFO     | sum of square deviations: 6518924455.072448
[2025-05-24 20:32:26] 2025-05-25 00:32:08,430 | INFO     | sum of deviations: -14211041685.855074
[2025-05-24 20:32:26] 2025-05-25 00:32:08,443 | INFO     | mean x: 1748124671.7246377
[2025-05-24 20:32:26] 2025-05-25 00:32:08,443 | INFO     | mean y: 2123554.4492753623
[2025-05-24 20:32:26] 2025-05-25 00:32:08,443 | INFO     | -- intersect: 3812978052.4823346
[2025-05-24 20:32:26] 2025-05-25 00:32:08,443 | INFO     | intersect: 3812978052.4823346
[2025-05-24 20:32:26] 2025-05-25 00:32:08,444 | INFO     | chi2: 1.6971633254229228
[2025-05-24 20:32:26] 2025-05-25 00:32:08,444 | INFO     | current chi2=1.6971633254229228 (change=49.94194523401531 %)
[2025-05-24 20:32:26] 2025-05-25 00:32:08,444 | INFO     | sum of square deviations: 6170990153.26935
[2025-05-24 20:32:26] 2025-05-25 00:32:08,446 | INFO     | sum of deviations: -20744223477.1107
[2025-05-24 20:32:26] 2025-05-25 00:32:08,446 | INFO     | mean x: 1748124824.2250922
[2025-05-24 20:32:26] 2025-05-25 00:32:08,446 | INFO     | mean y: 2126393.4280442805
[2025-05-24 20:32:26] 2025-05-25 00:32:08,446 | INFO     | -- intersect: 5878572655.523928
[2025-05-24 20:32:26] 2025-05-25 00:32:08,470 | INFO     | intersect: 5878572655.523928
[2025-05-24 20:32:26] 2025-05-25 00:32:08,470 | INFO     | chi2: 1.6507117779868263
[2025-05-24 20:32:26] 2025-05-25 00:32:08,471 | INFO     | current chi2=1.6507117779868263 (change=2.737011031305489 %)
[2025-05-24 20:32:26] 2025-05-25 00:32:08,471 | INFO     | left removable region: 20
[2025-05-24 20:32:26] 2025-05-25 00:32:08,471 | INFO     | sum of square deviations: 4844741894.095992
[2025-05-24 20:32:26] 2025-05-25 00:32:08,473 | INFO     | sum of deviations: 12428487727.248001
[2025-05-24 20:32:26] 2025-05-25 00:32:08,473 | INFO     | mean x: 1748124793.704
[2025-05-24 20:32:26] 2025-05-25 00:32:08,473 | INFO     | mean y: 2141288.152
[2025-05-24 20:32:26] 2025-05-25 00:32:08,473 | INFO     | -- intersect: -4482421154.839028
[2025-05-24 20:32:26] 2025-05-25 00:32:08,473 | INFO     | intersect: -4482421154.839028
[2025-05-24 20:32:26] 2025-05-25 00:32:08,498 | INFO     | chi2: 0.1071598263388526
[2025-05-24 20:32:26] 2025-05-25 00:32:08,498 | INFO     | -- intersect: -4482421154.839028
[2025-05-24 20:32:26] 2025-05-25 00:32:08,498 | INFO     | current memory leak: 2.57 B/s (using 250 data points, chi2=0.11)
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | ..............................
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . Timing measurements:
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . get job = 0 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . initial setup = 2 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . payload setup = 8 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . stage-in = 0 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,499 | INFO     | . payload execution = 17128 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,500 | INFO     | . stage-out = 8 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,500 | INFO     | . log creation = 0 s
[2025-05-24 20:32:26] 2025-05-25 00:32:08,500 | INFO     | ..............................
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | 
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | job summary report
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | --------------------------------------------------
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | PanDA job id: 6665381043
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | task id: 44871837
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | errors: (none)
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | pilot state: finished 
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | transexitcode: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:09,491 | INFO     | exeerrorcode: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | exeerrordiag: 
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | exitcode: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | exitmsg: OK
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | cpuconsumptiontime: 55042 s
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | nevents: 400
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | neventsw: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | pid: 4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | pgrp: 4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | corecount: 8
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | event service: False
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | sizes: {0: 2393568, 1: 2393767, 6: 2393973, 11: 2394001, 17141: 2425529, 17151: 2434654, 17171: 2434768}
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | --------------------------------------------------
[2025-05-24 20:32:26] 2025-05-25 00:32:09,492 | INFO     | 
[2025-05-24 20:32:26] 2025-05-25 00:32:09,493 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 20:32:26] 2025-05-25 00:32:09,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,582 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 20:32:26] 2025-05-25 00:32:09,582 | INFO     | job 6665381043 has completed (purged errors)
[2025-05-24 20:32:26] 2025-05-25 00:32:09,582 | INFO     | overall cleanup function is called
[2025-05-24 20:32:26] 2025-05-25 00:32:10,608 | INFO     | --- collectZombieJob: --- 10, [4043618]
[2025-05-24 20:32:26] 2025-05-25 00:32:10,608 | INFO     | zombie collector waiting for pid 4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:10,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 20:32:26] 2025-05-25 00:32:10,608 | INFO     | collected zombie processes
[2025-05-24 20:32:26] 2025-05-25 00:32:10,608 | INFO     | will attempt to kill all subprocesses of pid=4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:12,622 | INFO     | PID=4003646 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-24 20:32:26] 2025-05-25 00:32:12,622 | INFO     | .. there are 50 such processes running
[2025-05-24 20:32:26] 2025-05-25 00:32:13,698 | INFO     | process IDs to be killed: [4043618] (in reverse order)
[2025-05-24 20:32:26] 2025-05-25 00:32:14,057 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 20:32:26] 2025-05-25 00:32:14,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 20:32:26] 2025-05-25 00:32:14,123 | INFO     | did not find any defunct processes belonging to 4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:14,169 | INFO     | did not find any defunct processes belonging to 4043618
[2025-05-24 20:32:26] 2025-05-25 00:32:14,169 | INFO     | ready for new job
[2025-05-24 20:32:26] 2025-05-25 00:32:14,169 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 20:32:26] 2025-05-25 00:32:14,176 | INFO     | **************************************
[2025-05-24 20:32:26] 2025-05-25 00:32:14,176 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 20:32:26] 2025-05-25 00:32:14,176 | INFO     | **************************************
[2025-05-24 20:32:26] 2025-05-25 00:32:14,176 | INFO     | 
[2025-05-24 20:32:26] 2025-05-25 00:32:14,232 | INFO     | architecture information:
[2025-05-24 20:32:26] 2025-05-25 00:32:14,240 | INFO     | executing command: cat /etc/os-release
[2025-05-24 20:32:26] 2025-05-25 00:32:14,326 | INFO     | cat /etc/os-release:
[2025-05-24 20:32:26] NAME="CentOS Linux"
[2025-05-24 20:32:26] VERSION="7 (Core)"
[2025-05-24 20:32:26] ID="centos"
[2025-05-24 20:32:26] ID_LIKE="rhel fedora"
[2025-05-24 20:32:26] VERSION_ID="7"
[2025-05-24 20:32:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 20:32:26] ANSI_COLOR="0;31"
[2025-05-24 20:32:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 20:32:26] HOME_URL="https://www.centos.org/"
[2025-05-24 20:32:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 20:32:26] 
[2025-05-24 20:32:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 20:32:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 20:32:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 20:32:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 20:32:26] 
[2025-05-24 20:32:26] 2025-05-25 00:32:14,326 | INFO     | **************************************
[2025-05-24 20:32:26] 2025-05-25 00:32:14,830 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-24 20:32:26] 2025-05-25 00:32:14,967 | INFO     | sufficient remaining disk space (93557096448 B)
[2025-05-24 20:32:26] 2025-05-25 00:32:14,967 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 20:32:26] 2025-05-25 00:32:14,967 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 20:32:26] 2025-05-25 00:32:14,967 | INFO     | update_server=False
[2025-05-24 20:32:26] 2025-05-25 00:32:14,967 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 20:32:26] 2025-05-25 00:32:14,968 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 20:32:26] 2025-05-25 00:32:14,968 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 20:32:26] 2025-05-25 00:32:14,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 20:32:26] 2025-05-25 00:32:14,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 20:32:26] 2025-05-25 00:32:14,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 20:32:26] 2025-05-25 00:32:14,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 20:32:26] 2025-05-25 00:32:15,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 20:32:26] 2025-05-25 00:32:15,316 | INFO     | aborting loop
[2025-05-24 20:32:26] 2025-05-25 00:32:15,585 | INFO     | all data control threads have been joined
[2025-05-24 20:32:26] 2025-05-25 00:32:15,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 20:32:26] 2025-05-25 00:32:15,974 | INFO     | [job] retrieve thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:15,977 | INFO     | [job] queue monitor thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:15,995 | INFO     | all payload control threads have been joined
[2025-05-24 20:32:26] 2025-05-25 00:32:16,016 | INFO     | [job] validate thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,151 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,242 | INFO     | [payload] failed_post thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,257 | INFO     | [payload] validate_post thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,349 | INFO     | [job] job monitor thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,549 | INFO     | all job control threads have been joined
[2025-05-24 20:32:26] 2025-05-25 00:32:16,591 | INFO     | [data] control thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:16,794 | INFO     | [data] copytool_in thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,001 | INFO     | [payload] control thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,365 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,465 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,556 | INFO     | [job] control thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:17,692 | INFO     | [data] copytool_out thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:18,993 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 20:32:26] 2025-05-25 00:32:19,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470315444032)>', '<ExcThread(monitor, started 140469950457600)>']
[2025-05-24 20:32:26] 2025-05-25 00:32:20,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 20:32:26] 2025-05-25 00:32:20,006 | INFO     | [monitor] control thread has ended
[2025-05-24 20:32:26] 2025-05-25 00:32:24,844 | INFO     | all workflow threads have been joined
[2025-05-24 20:32:26] 2025-05-25 00:32:24,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 20:32:26] 2025-05-25 00:32:24,844 | INFO     | traces error code: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:24,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 20:32:26] 2025-05-25 00:32:26,126 [wrapper] ==== pilot stdout END ====
[2025-05-24 20:32:26] 2025-05-25 00:32:26,138 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 20:32:26] 2025-05-25 00:32:26,141 [wrapper] pilotpid: 4003646
[2025-05-24 20:32:26] 2025-05-25 00:32:26,145 [wrapper] Pilot exit status: 0
[2025-05-24 20:32:26] 2025-05-25 00:32:26,228 [wrapper] pandaids: 6665381043 6665381043
[2025-05-24 20:32:26] 2025-05-25 00:32:26,475 [wrapper] cleanup supervisor_pilot 1664406 4003647
[2025-05-24 20:32:26] 2025-05-25 00:32:26,491 [wrapper] Test setup, not cleaning
[2025-05-24 20:32:26] 2025-05-25 00:32:26,505 [wrapper] apfmon messages muted
[2025-05-24 20:32:26] 2025-05-25 00:32:26,519 [wrapper] ==== wrapper stdout END ====
[2025-05-24 20:32:26] 2025-05-25 00:32:26,529 [wrapper] ==== wrapper stderr END ====
[2025-05-24 20:32:26]  *** Error codes and diagnostics ***
[2025-05-24 20:32:26]     "exeErrorCode": 0,
[2025-05-24 20:32:26]     "exeErrorDiag": "",
[2025-05-24 20:32:26]     "pilotErrorCode": 0,
[2025-05-24 20:32:26]     "pilotErrorDiag": "",
[2025-05-24 20:32:26]  *** Listing of results directory ***
[2025-05-24 20:32:26] total 648584
[2025-05-24 20:32:26] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas    495897 May 24 06:42 pilot3.tar.gz
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas      5111 May 24 06:52 queuedata.json
[2025-05-24 20:32:26] -rwx------. 1 boincer umatlas     37140 May 24 06:53 runpilot2-wrapper.sh
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas       100 May 24 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 20:32:26] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 12:12 run_atlas
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas       105 May 24 12:12 job.xml
[2025-05-24 20:32:26] -rw-r--r--. 3 boincer umatlas 228296708 May 24 12:12 EVNT.44871834._000638.pool.root.1
[2025-05-24 20:32:26] -rw-r--r--. 3 boincer umatlas 228296708 May 24 12:12 ATLAS.root_0
[2025-05-24 20:32:26] -rw-r--r--. 2 boincer umatlas     15093 May 24 12:12 start_atlas.sh
[2025-05-24 20:32:26] drwxrwx--x. 2 boincer umatlas      4096 May 24 12:12 shared
[2025-05-24 20:32:26] -rw-r--r--. 2 boincer umatlas    508884 May 24 12:12 input.tar.gz
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas         0 May 24 12:12 boinc_lockfile
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas      2558 May 24 15:45 pandaJob.out
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas    988564 May 24 15:45 agis_schedconf.cvmfs.json
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas      6860 May 24 20:29 init_data.xml
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas 200325657 May 24 20:29 HITS.44871837._015944.pool.root.1
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas       531 May 24 20:29 boinc_task_state.xml
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas      1044 May 24 20:31 memory_monitor_summary.json
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas   1596740 May 24 20:31 agis_ddmendpoints.agis.ALL.json
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas    409448 May 24 20:31 log.44871837._015944.job.log.tgz.1
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas      8192 May 24 20:31 boinc_mmap_file
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas        28 May 24 20:31 wrapper_checkpoint.txt
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas        96 May 24 20:32 pilot_heartbeat.json
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas      7726 May 24 20:32 heartbeat.json
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas      4476 May 24 20:32 pilotlog.txt
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas   1292431 May 24 20:32 log.44871837._015944.job.log.1
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas       357 May 24 20:32 output.list
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas       620 May 24 20:32 runtime_log
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas   1720320 May 24 20:32 result.tar.gz
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas      8755 May 24 20:32 runtime_log.err
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas       782 May 24 20:32 5prNDmfg1c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRbMKDmUofvhm.diag
[2025-05-24 20:32:26] -rw-r--r--. 1 boincer umatlas     23266 May 24 20:32 stderr.txt
[2025-05-24 20:32:26] HITS file was successfully produced:
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas 200325657 May 24 20:29 shared/HITS.pool.root.1
[2025-05-24 20:32:26]  *** Contents of shared directory: ***
[2025-05-24 20:32:26] total 420780
[2025-05-24 20:32:26] -rw-r--r--. 3 boincer umatlas 228296708 May 24 12:12 ATLAS.root_0
[2025-05-24 20:32:26] -rw-r--r--. 2 boincer umatlas     15093 May 24 12:12 start_atlas.sh
[2025-05-24 20:32:26] -rw-r--r--. 2 boincer umatlas    508884 May 24 12:12 input.tar.gz
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas 200325657 May 24 20:29 HITS.pool.root.1
[2025-05-24 20:32:26] -rw-------. 1 boincer umatlas   1720320 May 24 20:32 result.tar.gz
20:32:28 (3981174): run_atlas exited; CPU time 55969.447895
20:32:28 (3981174): called boinc_finish(0)

</stderr_txt>
]]>

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