Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
22:21:06 (1051631): wrapper (7.7.26015): starting
22:21:06 (1051631): wrapper: running run_atlas (--nthreads 12)
[2025-05-24 22:21:06] Arguments: --nthreads 12
[2025-05-24 22:21:06] Threads: 12
[2025-05-24 22:21:06] Checking for CVMFS
[2025-05-24 22:21:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 22:21:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 22:21:06] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 22:21:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 22:21:06] 2.11.5.0 4610 260 86628 146378 3 186 3802947 4194304 8860 130560 0 2563588 99.998 78387 930 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-05-24 22:21:06] CVMFS is ok
[2025-05-24 22:21:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 22:21:06] Checking for apptainer binary...
[2025-05-24 22:21:06] apptainer is not installed, using version from CVMFS
[2025-05-24 22:21:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 22:21:06] mikemint-desktop
[2025-05-24 22:21:06] apptainer works
[2025-05-24 22:21:06] Set ATHENA_PROC_NUMBER=12
[2025-05-24 22:21:06] Set ATHENA_CORE_NUMBER=12
[2025-05-24 22:21:06] Starting ATLAS job with PandaID=6665379963
[2025-05-24 22:21:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 00:26:46]  *** The last 200 lines of the pilot log: ***
[2025-05-25 00:26:46] 2025-05-24 22:26:27,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 00:26:46] 2025-05-24 22:26:28,280 | INFO     | 7513s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-05-25 00:26:46] 2025-05-24 22:26:29,973 | INFO     | PID=1058376 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-25 00:26:46] 2025-05-24 22:26:29,974 | INFO     | .. there are 16 such processes running
[2025-05-25 00:26:46] 2025-05-24 22:26:30,347 | INFO     | monitor loop #489: job 0:6665379963 is in state 'finished'
[2025-05-25 00:26:46] 2025-05-24 22:26:30,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,848 | INFO     | monitor loop #490: job 0:6665379963 is in state 'finished'
[2025-05-25 00:26:46] 2025-05-24 22:26:32,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 00:26:46] 2025-05-24 22:26:32,873 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6665379963/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,873 | INFO     | extracted standard info from prmon json
[2025-05-25 00:26:46] 2025-05-24 22:26:32,873 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 00:26:46] 2025-05-24 22:26:32,874 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 00:26:46] 2025-05-24 22:26:32,874 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 00:26:46] 2025-05-24 22:26:32,874 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 00:26:46] 2025-05-24 22:26:32,877 | INFO     | fitting pss+swap vs Time
[2025-05-25 00:26:46] 2025-05-24 22:26:32,877 | INFO     | sum of square deviations: 576985702.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | sum of deviations: 22255347787.000004
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | mean x: 1748121825.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | mean y: 2589058.4552845526
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | -- intersect: -67425527538.825935
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | intersect: -67425527538.825935
[2025-05-25 00:26:46] 2025-05-24 22:26:32,878 | INFO     | chi2: 2.875297189930159
[2025-05-25 00:26:46] 2025-05-24 22:26:32,879 | INFO     | sum of square deviations: 509440249.5
[2025-05-25 00:26:46] 2025-05-24 22:26:32,879 | INFO     | sum of deviations: 29364569820.499996
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | mean x: 1748121672.5
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | mean y: 2604493.127118644
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | -- intersect: -100760617410.20126
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | intersect: -100760617410.20126
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | chi2: 2.1783782980795157
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | current chi2=2.1783782980795157 (change=24.23815160016803 %)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,880 | INFO     | right removable region: 117
[2025-05-25 00:26:46] 2025-05-24 22:26:32,881 | INFO     | sum of square deviations: 509440249.5
[2025-05-25 00:26:46] 2025-05-24 22:26:32,881 | INFO     | sum of deviations: -5201825874.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,881 | INFO     | mean x: 1748121977.5
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | mean y: 2650356.0508474577
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | -- intersect: 17852488766.72308
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | intersect: 17852488766.72308
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | chi2: 0.7753190121293781
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | current chi2=0.7753190121293781 (change=73.03516955239641 %)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,882 | INFO     | sum of square deviations: 447383272.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,883 | INFO     | sum of deviations: -7616185927.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,883 | INFO     | mean x: 1748122130.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,883 | INFO     | mean y: 2656134.1061946903
[2025-05-25 00:26:46] 2025-05-24 22:26:32,883 | INFO     | -- intersect: 29762425885.138065
[2025-05-25 00:26:46] 2025-05-24 22:26:32,884 | INFO     | intersect: 29762425885.138065
[2025-05-25 00:26:46] 2025-05-24 22:26:32,884 | INFO     | chi2: 0.7351992765648705
[2025-05-25 00:26:46] 2025-05-24 22:26:32,884 | INFO     | current chi2=0.7351992765648705 (change=5.1746100555848145 %)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,884 | INFO     | left removable region: 20
[2025-05-25 00:26:46] 2025-05-24 22:26:32,884 | INFO     | sum of square deviations: 282974608.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,885 | INFO     | sum of deviations: -439292719.9999998
[2025-05-25 00:26:46] 2025-05-24 22:26:32,885 | INFO     | mean x: 1748122252.0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,885 | INFO     | mean y: 2677701.494845361
[2025-05-25 00:26:46] 2025-05-24 22:26:32,885 | INFO     | -- intersect: 2716480838.8194675
[2025-05-25 00:26:46] 2025-05-24 22:26:32,885 | INFO     | intersect: 2716480838.8194675
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | chi2: 0.0007784767514971059
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | -- intersect: 2716480838.8194675
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | current memory leak: -1.55 B/s (using 97 data points, chi2=0.00)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | ..............................
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | . Timing measurements:
[2025-05-25 00:26:46] 2025-05-24 22:26:32,886 | INFO     | . get job = 0 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . initial setup = 1 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . payload setup = 7 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . stage-in = 0 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . payload execution = 7476 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . stage-out = 1 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | . log creation = 0 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,887 | INFO     | ..............................
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | 
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | job summary report
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | --------------------------------------------------
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | PanDA job id: 6665379963
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | task id: 44871837
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | errors: (none)
[2025-05-25 00:26:46] 2025-05-24 22:26:32,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | pilot state: finished 
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | transexitcode: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | exeerrorcode: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | exeerrordiag: 
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | exitcode: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | exitmsg: OK
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | cpuconsumptiontime: 56262 s
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | nevents: 400
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | neventsw: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | pid: 1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:32,994 | INFO     | pgrp: 1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | corecount: 12
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | event service: False
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | sizes: {0: 2393574, 1: 2393773, 6: 2393979, 11: 2394007, 7487: 2421580, 7488: 2421579, 7490: 2430774, 7501: 2430888}
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | --------------------------------------------------
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | 
[2025-05-25 00:26:46] 2025-05-24 22:26:32,995 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-05-25 00:26:46] 2025-05-24 22:26:33,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 00:26:46] 2025-05-24 22:26:33,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,027 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 00:26:46] 2025-05-24 22:26:33,027 | INFO     | job 6665379963 has completed (purged errors)
[2025-05-25 00:26:46] 2025-05-24 22:26:33,027 | INFO     | overall cleanup function is called
[2025-05-25 00:26:46] 2025-05-24 22:26:34,036 | INFO     | --- collectZombieJob: --- 10, [1105125]
[2025-05-25 00:26:46] 2025-05-24 22:26:34,036 | INFO     | zombie collector waiting for pid 1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:34,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 00:26:46] 2025-05-24 22:26:34,037 | INFO     | collected zombie processes
[2025-05-25 00:26:46] 2025-05-24 22:26:34,037 | INFO     | will attempt to kill all subprocesses of pid=1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:34,611 | INFO     | process IDs to be killed: [1105125] (in reverse order)
[2025-05-25 00:26:46] 2025-05-24 22:26:34,801 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 00:26:46] 2025-05-24 22:26:34,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 00:26:46] 2025-05-24 22:26:34,820 | INFO     | did not find any defunct processes belonging to 1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:34,838 | INFO     | did not find any defunct processes belonging to 1105125
[2025-05-25 00:26:46] 2025-05-24 22:26:34,839 | INFO     | ready for new job
[2025-05-25 00:26:46] 2025-05-24 22:26:34,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 00:26:46] 2025-05-24 22:26:34,841 | INFO     | **************************************
[2025-05-25 00:26:46] 2025-05-24 22:26:34,841 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 00:26:46] 2025-05-24 22:26:34,841 | INFO     | **************************************
[2025-05-25 00:26:46] 2025-05-24 22:26:34,841 | INFO     | 
[2025-05-25 00:26:46] 2025-05-24 22:26:34,853 | INFO     | architecture information:
[2025-05-25 00:26:46] 2025-05-24 22:26:34,853 | INFO     | executing command: cat /etc/os-release
[2025-05-25 00:26:46] 2025-05-24 22:26:34,875 | INFO     | cat /etc/os-release:
[2025-05-25 00:26:46] NAME="CentOS Linux"
[2025-05-25 00:26:46] VERSION="7 (Core)"
[2025-05-25 00:26:46] ID="centos"
[2025-05-25 00:26:46] ID_LIKE="rhel fedora"
[2025-05-25 00:26:46] VERSION_ID="7"
[2025-05-25 00:26:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 00:26:46] ANSI_COLOR="0;31"
[2025-05-25 00:26:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 00:26:46] HOME_URL="https://www.centos.org/"
[2025-05-25 00:26:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 00:26:46] 
[2025-05-25 00:26:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 00:26:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 00:26:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 00:26:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 00:26:46] 
[2025-05-25 00:26:46] 2025-05-24 22:26:34,876 | INFO     | **************************************
[2025-05-25 00:26:46] 2025-05-24 22:26:35,376 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-05-25 00:26:46] 2025-05-24 22:26:35,399 | INFO     | sufficient remaining disk space (199086833664 B)
[2025-05-25 00:26:46] 2025-05-24 22:26:35,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 00:26:46] 2025-05-24 22:26:35,400 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 00:26:46] 2025-05-24 22:26:35,400 | INFO     | update_server=False
[2025-05-25 00:26:46] 2025-05-24 22:26:35,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 00:26:46] 2025-05-24 22:26:35,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 00:26:46] 2025-05-24 22:26:35,452 | INFO     | all payload control threads have been joined
[2025-05-25 00:26:46] 2025-05-24 22:26:35,584 | INFO     | all data control threads have been joined
[2025-05-25 00:26:46] 2025-05-24 22:26:35,988 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 00:26:46] 2025-05-24 22:26:35,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 00:26:46] 2025-05-24 22:26:35,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 00:26:46] 2025-05-24 22:26:36,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 00:26:46] 2025-05-24 22:26:36,356 | INFO     | aborting loop
[2025-05-25 00:26:46] 2025-05-24 22:26:36,404 | INFO     | [job] retrieve thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,456 | INFO     | [payload] control thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,500 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,508 | INFO     | [data] copytool_in thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,588 | INFO     | [data] control thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,760 | INFO     | [job] validate thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:36,914 | INFO     | all job control threads have been joined
[2025-05-25 00:26:46] 2025-05-24 22:26:37,032 | INFO     | [payload] validate_post thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,276 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 00:26:46] 2025-05-24 22:26:37,360 | INFO     | [job] job monitor thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,404 | INFO     | [data] copytool_out thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,544 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,828 | INFO     | [payload] failed_post thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:37,916 | INFO     | [job] control thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:38,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 00:26:46] 2025-05-24 22:26:39,008 | INFO     | [job] queue monitor thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:41,301 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 00:26:46] 2025-05-24 22:26:41,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112245233472)>', '<ExcThread(monitor, started 140111798843136)>']
[2025-05-25 00:26:46] 2025-05-24 22:26:42,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 00:26:46] 2025-05-24 22:26:42,016 | INFO     | [monitor] control thread has ended
[2025-05-25 00:26:46] 2025-05-24 22:26:46,360 | INFO     | all workflow threads have been joined
[2025-05-25 00:26:46] 2025-05-24 22:26:46,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 00:26:46] 2025-05-24 22:26:46,360 | INFO     | traces error code: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:46,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 00:26:46] 2025-05-24 22:26:46,494 [wrapper] ==== pilot stdout END ====
[2025-05-25 00:26:46] 2025-05-24 22:26:46,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 00:26:46] 2025-05-24 22:26:46,502 [wrapper] pilotpid: 1058376
[2025-05-25 00:26:46] 2025-05-24 22:26:46,506 [wrapper] Pilot exit status: 0
[2025-05-25 00:26:46] 2025-05-24 22:26:46,519 [wrapper] pandaids: 6665379963
[2025-05-25 00:26:46] 2025-05-24 22:26:46,635 [wrapper] cleanup supervisor_pilot 1480456 1058377
[2025-05-25 00:26:46] 2025-05-24 22:26:46,639 [wrapper] Test setup, not cleaning
[2025-05-25 00:26:46] 2025-05-24 22:26:46,643 [wrapper] apfmon messages muted
[2025-05-25 00:26:46] 2025-05-24 22:26:46,647 [wrapper] ==== wrapper stdout END ====
[2025-05-25 00:26:46] 2025-05-24 22:26:46,650 [wrapper] ==== wrapper stderr END ====
[2025-05-25 00:26:46]  *** Error codes and diagnostics ***
[2025-05-25 00:26:46]     "exeErrorCode": 0,
[2025-05-25 00:26:46]     "exeErrorDiag": "",
[2025-05-25 00:26:46]     "pilotErrorCode": 0,
[2025-05-25 00:26:46]     "pilotErrorDiag": "",
[2025-05-25 00:26:46]  *** Listing of results directory ***
[2025-05-25 00:26:46] insgesamt 412332
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc    495897 Mai 24 12:13 pilot3.tar.gz
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc      5111 Mai 24 12:29 queuedata.json
[2025-05-25 00:26:46] -rwx------ 1 boinc boinc     37140 Mai 24 12:30 runpilot2-wrapper.sh
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc       100 Mai 24 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 00:26:46] -rwxr-xr-x 1 boinc boinc      7986 Mai 24 22:21 run_atlas
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc       105 Mai 24 22:21 job.xml
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc     15093 Mai 24 22:21 start_atlas.sh
[2025-05-25 00:26:46] drwxrwx--x 2 boinc boinc      4096 Mai 24 22:21 shared
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc    508877 Mai 24 22:21 input.tar.gz
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc      6647 Mai 24 22:21 init_data.xml
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc 222347870 Mai 24 22:21 EVNT.44871834._000623.pool.root.1
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc         0 Mai 24 22:21 boinc_lockfile
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc      2557 Mai 24 22:21 pandaJob.out
[2025-05-25 00:26:46] -rw------- 1 boinc boinc    990811 Mai 24 22:21 agis_schedconf.cvmfs.json
[2025-05-25 00:26:46] -rw------- 1 boinc boinc   1596740 Mai 24 22:21 agis_ddmendpoints.agis.ALL.json
[2025-05-25 00:26:46] drwx------ 4 boinc boinc      4096 Mai 24 22:21 pilot3
[2025-05-25 00:26:46] -rw------- 1 boinc boinc 193915471 Mai 25 00:25 HITS.44871837._015567.pool.root.1
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc       530 Mai 25 00:25 boinc_task_state.xml
[2025-05-25 00:26:46] -rw------- 1 boinc boinc      1027 Mai 25 00:26 memory_monitor_summary.json
[2025-05-25 00:26:46] -rw------- 1 boinc boinc        95 Mai 25 00:26 pilot_heartbeat.json
[2025-05-25 00:26:46] -rw------- 1 boinc boinc    388633 Mai 25 00:26 log.44871837._015567.job.log.tgz.1
[2025-05-25 00:26:46] -rw------- 1 boinc boinc      7665 Mai 25 00:26 heartbeat.json
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc      8192 Mai 25 00:26 boinc_mmap_file
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc        27 Mai 25 00:26 wrapper_checkpoint.txt
[2025-05-25 00:26:46] -rw------- 1 boinc boinc      4361 Mai 25 00:26 pilotlog.txt
[2025-05-25 00:26:46] -rw------- 1 boinc boinc    677658 Mai 25 00:26 log.44871837._015567.job.log.1
[2025-05-25 00:26:46] -rw------- 1 boinc boinc       357 Mai 25 00:26 output.list
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc       620 Mai 25 00:26 runtime_log
[2025-05-25 00:26:46] -rw------- 1 boinc boinc   1085440 Mai 25 00:26 result.tar.gz
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc      8800 Mai 25 00:26 runtime_log.err
[2025-05-25 00:26:46] -rw------- 1 boinc boinc       664 Mai 25 00:26 9E8LDmWK1c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmfaMKDmMVelfm.diag
[2025-05-25 00:26:46] -rw-r--r-- 1 boinc boinc     20913 Mai 25 00:26 stderr.txt
[2025-05-25 00:26:46] HITS file was successfully produced:
[2025-05-25 00:26:46] -rw------- 1 boinc boinc 193915471 Mai 25 00:25 shared/HITS.pool.root.1
[2025-05-25 00:26:46]  *** Contents of shared directory: ***
[2025-05-25 00:26:46] insgesamt 408096
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc     15093 Mai 24 22:21 start_atlas.sh
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc    508877 Mai 24 22:21 input.tar.gz
[2025-05-25 00:26:46] -rw-r--r-- 2 boinc boinc 222347870 Mai 24 22:21 ATLAS.root_0
[2025-05-25 00:26:46] -rw------- 1 boinc boinc 193915471 Mai 25 00:25 HITS.pool.root.1
[2025-05-25 00:26:46] -rw------- 1 boinc boinc   1085440 Mai 25 00:26 result.tar.gz
00:26:48 (1051631): run_atlas exited; CPU time 56645.788264
00:26:48 (1051631): called boinc_finish(0)

</stderr_txt>
]]>

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