Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 11:14:55 (7496): Detected: vboxwrapper 26206
2025-05-24 11:14:55 (7496): Detected: BOINC client v8.0.4
2025-05-24 11:14:56 (7496): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-24 11:14:56 (7496): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 11:14:57 (7496): Create VM. (boinc_497a71590304f3b4, slot#1)
2025-05-24 11:14:59 (7496): Setting Memory Size for VM. (4400MB)
2025-05-24 11:15:02 (7496): Setting CPU Count for VM. (4)
2025-05-24 11:15:03 (7496): Setting Chipset Options for VM.
2025-05-24 11:15:05 (7496): Setting Graphics Controller Options for VM.
2025-05-24 11:15:06 (7496): Setting Boot Options for VM.
2025-05-24 11:15:08 (7496): Setting Network Configuration for NAT.
2025-05-24 11:15:10 (7496): Enabling VM Network Access.
2025-05-24 11:15:13 (7496): Disabling USB Support for VM.
2025-05-24 11:15:15 (7496): Disabling COM Port Support for VM.
2025-05-24 11:15:16 (7496): Disabling LPT Port Support for VM.
2025-05-24 11:15:24 (7496): Disabling Audio Support for VM.
2025-05-24 11:15:24 (7496): Disabling Clipboard Support for VM.
2025-05-24 11:15:25 (7496): Disabling Drag and Drop Support for VM.
2025-05-24 11:15:25 (7496): Adding storage controller(s) to VM.
2025-05-24 11:15:25 (7496): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 11:15:26 (7496): Adding VirtualBox Guest Additions to VM.
2025-05-24 11:15:26 (7496): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 11:15:26 (7496): forwarding host port 55411 to guest port 80
2025-05-24 11:15:26 (7496): Enabling remote desktop for VM.
2025-05-24 11:15:27 (7496): Required extension pack not installed, remote desktop not enabled.
2025-05-24 11:15:27 (7496): Enabling shared directory for VM.
2025-05-24 11:15:27 (7496): Starting VM using VBoxManage interface. (boinc_497a71590304f3b4, slot#1)
2025-05-24 11:15:32 (7496): Successfully started VM. (PID = '1000')
2025-05-24 11:15:32 (7496): Reporting VM Process ID to BOINC.
2025-05-24 11:15:32 (7496): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-24 11:15:32 (7496): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 11:15:32 (7496): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 11:15:32 (7496): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 11:15:32 (7496): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 11:15:32 (7496): Detected: Web Application Enabled (http://localhost:55411)
2025-05-24 11:15:32 (7496): Preference change detected
2025-05-24 11:15:32 (7496): Setting CPU throttle for VM. (60%)
2025-05-24 11:15:33 (7496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 11:15:34 (7496): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 11:15:34 (7496): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 11:15:49 (7496): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 11:15:49 (7496): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 11:15:49 (7496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 11:16:06 (7496): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 11:16:06 (7496): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 11:17:56 (7496): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000131 main     Log opened 2025-05-24T11:17:54.355431000Z
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000210 main     OS Product: Linux
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000286 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000321 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000350 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000351 main     Process ID: 1329
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.000352 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 11:17:56 (7496): Guest Log: 00:00:00.001169 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 11:17:58 (7496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 11:17:58 (7496): Guest Log: [INFO] Mounting shared directory
2025-05-24 11:17:58 (7496): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 11:18:01 (7496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 11:18:01 (7496): Guest Log: [INFO] Detected branch: prod
2025-05-24 11:18:01 (7496): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 11:18:01 (7496): Guest Log: Copying input files
2025-05-24 11:18:03 (7496): Guest Log: Copied input files into RunAtlas.
2025-05-24 11:18:03 (7496): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 11:18:03 (7496): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 11:18:03 (7496): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 11:18:03 (7496): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 11:18:05 (7496): Guest Log: 00:00:10.002721 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 436 781 000ns (GuestNow=1 748 099 885 794 389 000 ns GuestLast=1 748 085 474 357 608 000 ns fSetTimeLastLoop=true )
2025-05-24 11:18:11 (7496): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 11:18:11 (7496): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 11:18:11 (7496): Guest Log: 2.6.3.0 1608 0 30176 146372 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 11:18:28 (7496): Guest Log: copied the webapp to /var/www
2025-05-24 11:18:28 (7496): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-24 11:18:28 (7496): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-24 11:18:29 (7496): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 11:18:29 (7496): Guest Log:  *** Starting ATLAS job. (PandaID=6665378958 taskID=44871837) ***
2025-05-24 12:55:37 (7496): Status Report: Elapsed Time: '6000.000000'
2025-05-24 12:55:37 (7496): Status Report: CPU Time: '12130.750000'
2025-05-24 14:35:41 (7496): Status Report: Elapsed Time: '12000.000000'
2025-05-24 14:35:41 (7496): Status Report: CPU Time: '26617.625000'
2025-05-24 16:03:35 (7496): Guest Log:  *** Job finished ***
2025-05-24 16:03:35 (7496): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:22,450 | INFO     | [data] queue_monitor thread has finished
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:26,745 | INFO     | job.realtimelogging is not enabled
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:27,746 | INFO     | [payload] run_realtimelog thread has finished
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:28,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787859965760)>', '<ExcThread(monitor, started 139787243591424)>']
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:28,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:28,693 | INFO     | [monitor] control thread has ended
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,067 | INFO     | all workflow threads have been joined
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,067 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,067 | INFO     | traces error code: 0
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,235 [wrapper] ==== pilot stdout END ====
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,239 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,243 [wrapper] pilotpid: 5968
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,246 [wrapper] Pilot exit status: 0
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,306 [wrapper] pandaids: 6665378958
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,336 [wrapper] cleanup supervisor_pilot 14867 5969
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,340 [wrapper] Test setup, not cleaning
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,344 [wrapper] apfmon messages muted
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,348 [wrapper] ==== wrapper stdout END ====
2025-05-24 16:03:35 (7496): Guest Log: 2025-05-24 20:03:33,352 [wrapper] ==== wrapper stderr END ====
2025-05-24 16:03:35 (7496): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 16:03:35 (7496): Guest Log:     "exeErrorCode": 0,
2025-05-24 16:03:35 (7496): Guest Log:     "exeErrorDiag": "",
2025-05-24 16:03:35 (7496): Guest Log:     "pilotErrorCode": 0,
2025-05-24 16:03:35 (7496): Guest Log:     "pilotErrorDiag": "",
2025-05-24 16:03:35 (7496): Guest Log:  *** Listing of results directory ***
2025-05-24 16:03:35 (7496): Guest Log: total 200084
2025-05-24 16:03:35 (7496): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 09:43 pilot3.tar.gz
2025-05-24 16:03:35 (7496): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 10:02 runpilot2-wrapper.sh
2025-05-24 16:03:35 (7496): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 10:03 queuedata.json
2025-05-24 16:03:35 (7496): Guest Log: -rwxr-xr-x. 1 atlas atlas     12280 May 24 15:18 init_data.xml
2025-05-24 16:03:35 (7496): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 May 24 15:18 input.tar.gz
2025-05-24 16:03:35 (7496): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 15:18 start_atlas.sh
2025-05-24 16:03:35 (7496): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 15:18 EVNT.44871834._000598.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 16:03:35 (7496): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 24 15:18 pandaJob.out
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas    988548 May 24 15:22 agis_schedconf.cvmfs.json
2025-05-24 16:03:35 (7496): Guest Log: drwx------. 4 atlas atlas      4096 May 24 15:22 pilot3
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas 198068226 May 24 20:02 HITS.44871837._014951.pool.root.1
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas        95 May 24 20:02 pilot_heartbeat.json
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas      1035 May 24 20:03 memory_monitor_summary.json
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 20:03 agis_ddmendpoints.agis.ALL.json
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas    338494 May 24 20:03 log.44871837._014951.job.log.tgz.1
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas      7701 May 24 20:03 heartbeat.json
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas      4485 May 24 20:03 pilotlog.txt
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas   1190380 May 24 20:03 log.44871837._014951.job.log.1
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas       357 May 24 20:03 output.list
2025-05-24 16:03:35 (7496): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 20:03 runtime_log
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas   1546240 May 24 20:03 result.tar.gz
2025-05-24 16:03:35 (7496): Guest Log: -rw-r--r--. 1 atlas atlas      8553 May 24 20:03 runtime_log.err
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas       647 May 24 20:03 KRCMDmbt0c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDYMKDmu4F2bn.diag
2025-05-24 16:03:35 (7496): Guest Log: Looking for outputfile HITS.44871837._014951.pool.root.1
2025-05-24 16:03:35 (7496): Guest Log: HITS file was successfully produced
2025-05-24 16:03:35 (7496): Guest Log: -rw-------. 1 atlas atlas 198068226 May 24 20:02 /home/atlas/RunAtlas/HITS.44871837._014951.pool.root.1
2025-05-24 16:03:37 (7496): Guest Log: Successfully finished the ATLAS job!
2025-05-24 16:03:37 (7496): Guest Log: Copying the results back to the shared directory!
2025-05-24 16:03:37 (7496): Guest Log:  *** Contents of shared directory: ***
2025-05-24 16:03:37 (7496): Guest Log: total 414704
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root 224493647 May 24 15:14 ATLAS.root_0
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root 198068226 May 24 20:03 HITS.pool.root.1
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root     12280 May 24 15:14 init_data.xml
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root    508879 May 24 15:14 input.tar.gz
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root   1546240 May 24 20:03 result.tar.gz
2025-05-24 16:03:37 (7496): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 15:14 start_atlas.sh
2025-05-24 16:03:37 (7496): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 16:03:37 (7496): VM Completion File Detected.
2025-05-24 16:03:37 (7496): Powering off VM.
2025-05-24 16:03:38 (7496): Successfully stopped VM.
2025-05-24 16:03:38 (7496): Deregistering VM. (boinc_497a71590304f3b4, slot#1)
2025-05-24 16:03:38 (7496): Removing network bandwidth throttle group from VM.
2025-05-24 16:03:38 (7496): Removing VM from VirtualBox.
16:03:44 (7496): called boinc_finish(0)

</stderr_txt>
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