Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
07:33:14 (959586): wrapper (7.7.26015): starting
07:33:14 (959586): wrapper: running run_atlas (--nthreads 4)
[2025-05-25 07:33:14] Arguments: --nthreads 4
[2025-05-25 07:33:14] Threads: 4
[2025-05-25 07:33:14] Checking for CVMFS
[2025-05-25 07:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-25 07:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-25 07:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-05-25 07:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-25 07:33:15] 2.12.7.0 14849 7633 43992 146390 1 56 23307616 33554433 0 130560 0 669560 99.964 492429 1081 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-05-25 07:33:15] CVMFS is ok
[2025-05-25 07:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 07:33:15] Checking for apptainer binary...
[2025-05-25 07:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-25 07:33:15] Running /usr/bin/apptainer --version
[2025-05-25 07:33:15] apptainer version 1.4.0
[2025-05-25 07:33:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 07:33:15] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-05-25 07:33:15] apptainer works
[2025-05-25 07:33:15] Set ATHENA_PROC_NUMBER=4
[2025-05-25 07:33:15] Set ATHENA_CORE_NUMBER=4
[2025-05-25 07:33:15] Starting ATLAS job with PandaID=6665378447
[2025-05-25 07:33:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 08:55:35]  *** The last 200 lines of the pilot log: ***
[2025-05-25 08:55:35]  is_altstaged=None
[2025-05-25 08:55:35]  is_tar=False
[2025-05-25 08:55:35]  lfn=log.44871837._014546.job.log.tgz.1
[2025-05-25 08:55:35]  mtime=0
[2025-05-25 08:55:35]  protocol_id=None
[2025-05-25 08:55:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-25 08:55:35]  replicas=None
[2025-05-25 08:55:35]  scope=mc23_13p6TeV
[2025-05-25 08:55:35]  status=None
[2025-05-25 08:55:35]  status_code=0
[2025-05-25 08:55:35]  storage_token=
[2025-05-25 08:55:35]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6665378447/log.44871837._014546.job.log.tgz.1
[2025-05-25 08:55:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/da/log.44871837._014546.job.log.tgz.1
[2025-05-25 08:55:35]  workdir=None
[2025-05-25 08:55:35] ]
[2025-05-25 08:55:35] 2025-05-25 05:55:08,189 | INFO     | transferring file log.44871837._014546.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6665378447/log.44871837._014546.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-05-25 08:55:35] 2025-05-25 05:55:08,189 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6665378447/log.44871837._014546.job.log.tgz.1 /home/ek/BOINC/slots/1/log.44871837._014546.job
[2025-05-25 08:55:35] 2025-05-25 05:55:08,200 | INFO     | adding to output.list: log.44871837._014546.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/da/log.44871837._014546.job.log.tg
[2025-05-25 08:55:35] 2025-05-25 05:55:08,201 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-25 08:55:35] 2025-05-25 05:55:08,201 | INFO     | summary of transferred files:
[2025-05-25 08:55:35] 2025-05-25 05:55:08,201 | INFO     |  -- lfn=log.44871837._014546.job.log.tgz.1, status_code=0, status=transferred
[2025-05-25 08:55:35] 2025-05-25 05:55:08,201 | INFO     | stage-out finished correctly
[2025-05-25 08:55:35] 2025-05-25 05:55:08,233 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-25 08:55:35] 2025-05-25 05:55:10,074 | INFO     | monitor loop #374: job 0:6665378447 is in state 'finished'
[2025-05-25 08:55:35] 2025-05-25 05:55:10,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | job 6665378447 has state=finished
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | preparing for final server update for job 6665378447 in state='finished'
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | this job has now completed (state=finished)
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | log transfer has been attempted: DONE
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | job 6665378447 has finished - writing final server update
[2025-05-25 08:55:35] 2025-05-25 05:55:10,574 | INFO     | total number of processed events: 400 (read)
[2025-05-25 08:55:35] 2025-05-25 05:55:10,576 | INFO     | executing command: lscpu
[2025-05-25 08:55:35] 2025-05-25 05:55:10,592 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-25 08:55:35] 2025-05-25 05:55:12,577 | INFO     | monitor loop #375: job 0:6665378447 is in state 'finished'
[2025-05-25 08:55:35] 2025-05-25 05:55:12,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,080 | INFO     | monitor loop #376: job 0:6665378447 is in state 'finished'
[2025-05-25 08:55:35] 2025-05-25 05:55:15,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6665378447/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | INFO     | extracted standard info from prmon json
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 08:55:35] 2025-05-25 05:55:15,353 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 08:55:35] 2025-05-25 05:55:15,354 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 08:55:35] 2025-05-25 05:55:15,354 | INFO     | fitting pss+swap vs Time
[2025-05-25 08:55:35] 2025-05-25 05:55:15,354 | INFO     | sum of square deviations: 125630262.5
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | sum of deviations: -16311663154.0
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | mean x: 1748150151.5
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | mean y: 2578040.972972973
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | -- intersect: 226980026359.86087
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | intersect: 226980026359.86087
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | chi2: 0.12561604349901406
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | -- intersect: 226980026359.86087
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | current memory leak: -129.84 B/s (using 74 data points, chi2=0.13)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | ..............................
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . Timing measurements:
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . get job = 0 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . initial setup = 1 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . payload setup = 3 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . stage-in = 0 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . payload execution = 4885 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . stage-out = 0 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | . log creation = 0 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,355 | INFO     | ..............................
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | 
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | job summary report
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | --------------------------------------------------
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | PanDA job id: 6665378447
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | task id: 44871837
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | errors: (none)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | pilot state: finished 
[2025-05-25 08:55:35] 2025-05-25 05:55:15,518 | INFO     | transexitcode: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | exeerrorcode: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | exeerrordiag: 
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | exitcode: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | exitmsg: OK
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | cpuconsumptiontime: 18543 s
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | nevents: 400
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | neventsw: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | pid: 970069
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | pgrp: 970069
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | corecount: 4
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | event service: False
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | sizes: {0: 2393739, 3: 2393945, 11: 2393973, 4893: 2420268, 4894: 2429265, 4901: 2429379}
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | --------------------------------------------------
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | 
[2025-05-25 08:55:35] 2025-05-25 05:55:15,519 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-05-25 08:55:35] 2025-05-25 05:55:15,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | job 6665378447 has completed (purged errors)
[2025-05-25 08:55:35] 2025-05-25 05:55:15,529 | INFO     | overall cleanup function is called
[2025-05-25 08:55:35] 2025-05-25 05:55:16,536 | INFO     | --- collectZombieJob: --- 10, [970069]
[2025-05-25 08:55:35] 2025-05-25 05:55:16,536 | INFO     | zombie collector waiting for pid 970069
[2025-05-25 08:55:35] 2025-05-25 05:55:16,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 08:55:35] 2025-05-25 05:55:16,536 | INFO     | collected zombie processes
[2025-05-25 08:55:35] 2025-05-25 05:55:16,536 | INFO     | will attempt to kill all subprocesses of pid=970069
[2025-05-25 08:55:35] 2025-05-25 05:55:16,655 | INFO     | process IDs to be killed: [970069] (in reverse order)
[2025-05-25 08:55:35] 2025-05-25 05:55:16,688 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 08:55:35] 2025-05-25 05:55:16,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 08:55:35] 2025-05-25 05:55:16,692 | INFO     | did not find any defunct processes belonging to 970069
[2025-05-25 08:55:35] 2025-05-25 05:55:16,695 | INFO     | did not find any defunct processes belonging to 970069
[2025-05-25 08:55:35] 2025-05-25 05:55:16,695 | INFO     | ready for new job
[2025-05-25 08:55:35] 2025-05-25 05:55:16,695 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | **************************************
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | **************************************
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | 
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | architecture information:
[2025-05-25 08:55:35] 2025-05-25 05:55:16,696 | INFO     | executing command: cat /etc/os-release
[2025-05-25 08:55:35] 2025-05-25 05:55:16,704 | INFO     | cat /etc/os-release:
[2025-05-25 08:55:35] NAME="CentOS Linux"
[2025-05-25 08:55:35] VERSION="7 (Core)"
[2025-05-25 08:55:35] ID="centos"
[2025-05-25 08:55:35] ID_LIKE="rhel fedora"
[2025-05-25 08:55:35] VERSION_ID="7"
[2025-05-25 08:55:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 08:55:35] ANSI_COLOR="0;31"
[2025-05-25 08:55:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 08:55:35] HOME_URL="https://www.centos.org/"
[2025-05-25 08:55:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 08:55:35] 
[2025-05-25 08:55:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 08:55:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 08:55:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 08:55:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 08:55:35] 
[2025-05-25 08:55:35] 2025-05-25 05:55:16,704 | INFO     | **************************************
[2025-05-25 08:55:35] 2025-05-25 05:55:17,207 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-05-25 08:55:35] 2025-05-25 05:55:17,214 | INFO     | sufficient remaining disk space (75684118528 B)
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | INFO     | update_server=False
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 08:55:35] 2025-05-25 05:55:17,215 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 08:55:35] 2025-05-25 05:55:17,459 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 08:55:35] 2025-05-25 05:55:17,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 08:55:35] 2025-05-25 05:55:17,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 08:55:35] 2025-05-25 05:55:17,583 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-25 08:55:35] 2025-05-25 05:55:17,583 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-25 08:55:35] 2025-05-25 05:55:17,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 08:55:35] 2025-05-25 05:55:17,583 | INFO     | will abort loop
[2025-05-25 08:55:35] 2025-05-25 05:55:17,647 | INFO     | all data control threads have been joined
[2025-05-25 08:55:35] 2025-05-25 05:55:18,149 | INFO     | all job control threads have been joined
[2025-05-25 08:55:35] 2025-05-25 05:55:18,220 | INFO     | [job] retrieve thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:18,220 | INFO     | [job] queue monitor thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:18,348 | INFO     | all payload control threads have been joined
[2025-05-25 08:55:35] 2025-05-25 05:55:18,588 | INFO     | [job] job monitor thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:18,652 | INFO     | [data] control thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:18,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 08:55:35] 2025-05-25 05:55:18,808 | INFO     | [payload] validate_post thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,026 | INFO     | [data] copytool_in thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,026 | INFO     | [job] validate thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,026 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,026 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,143 | INFO     | [payload] failed_post thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,154 | INFO     | [job] control thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,220 | INFO     | [data] copytool_out thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,353 | INFO     | [payload] control thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:19,573 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:22,780 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:27,532 | INFO     | job.realtimelogging is not enabled
[2025-05-25 08:55:35] 2025-05-25 05:55:28,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 08:55:35] 2025-05-25 05:55:30,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799988483904)>', '<ExcThread(monitor, started 139799482582784)>']
[2025-05-25 08:55:35] 2025-05-25 05:55:30,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 08:55:35] 2025-05-25 05:55:30,524 | INFO     | [monitor] control thread has ended
[2025-05-25 08:55:35] 2025-05-25 05:55:35,161 | INFO     | all workflow threads have been joined
[2025-05-25 08:55:35] 2025-05-25 05:55:35,161 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 08:55:35] 2025-05-25 05:55:35,161 | INFO     | traces error code: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:35,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 08:55:35] 2025-05-25 05:55:35,217 [wrapper] ==== pilot stdout END ====
[2025-05-25 08:55:35] 2025-05-25 05:55:35,219 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 08:55:35] 2025-05-25 05:55:35,221 [wrapper] pilotpid: 963310
[2025-05-25 08:55:35] 2025-05-25 05:55:35,223 [wrapper] Pilot exit status: 0
[2025-05-25 08:55:35] 2025-05-25 05:55:35,230 [wrapper] pandaids: 6665378447
[2025-05-25 08:55:35] 2025-05-25 05:55:35,254 [wrapper] cleanup supervisor_pilot 1027313 963311
[2025-05-25 08:55:35] 2025-05-25 05:55:35,256 [wrapper] Test setup, not cleaning
[2025-05-25 08:55:35] 2025-05-25 05:55:35,258 [wrapper] apfmon messages muted
[2025-05-25 08:55:35] 2025-05-25 05:55:35,259 [wrapper] ==== wrapper stdout END ====
[2025-05-25 08:55:35] 2025-05-25 05:55:35,261 [wrapper] ==== wrapper stderr END ====
[2025-05-25 08:55:35]  *** Error codes and diagnostics ***
[2025-05-25 08:55:35]     "exeErrorCode": 0,
[2025-05-25 08:55:35]     "exeErrorDiag": "",
[2025-05-25 08:55:35]     "pilotErrorCode": 0,
[2025-05-25 08:55:35]     "pilotErrorDiag": "",
[2025-05-25 08:55:35]  *** Listing of results directory ***
[2025-05-25 08:55:35] total 417448
[2025-05-25 08:55:35] -rw-r--r-- 1 ek ek    495897 May 24 12:43 pilot3.tar.gz
[2025-05-25 08:55:35] -rw-r--r-- 1 ek ek      5111 May 24 12:46 queuedata.json
[2025-05-25 08:55:35] -rwx------ 1 ek ek     37140 May 24 12:46 runpilot2-wrapper.sh
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek       100 May 25 07:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 08:55:35] -rwxr-xr-x 1 ek ek      7986 May 25 07:33 run_atlas
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek       105 May 25 07:33 job.xml
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek 226081633 May 25 07:33 EVNT.44871834._000582.pool.root.1
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek    508876 May 25 07:33 input.tar.gz
[2025-05-25 08:55:35] drwxrwx--x 2 ek ek      4096 May 25 07:33 shared
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek     15093 May 25 07:33 start_atlas.sh
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek         0 May 25 07:33 boinc_setup_complete
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek      9842 May 25 07:33 init_data.xml
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek         0 May 25 07:33 boinc_lockfile
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek      2558 May 25 07:33 pandaJob.out
[2025-05-25 08:55:35] -rw------- 1 ek ek    990803 May 25 07:33 agis_schedconf.cvmfs.json
[2025-05-25 08:55:35] -rw------- 1 ek ek   1596740 May 25 07:33 agis_ddmendpoints.agis.ALL.json
[2025-05-25 08:55:35] drwx------ 4 ek ek      4096 May 25 07:33 pilot3
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek       529 May 25 08:54 boinc_task_state.xml
[2025-05-25 08:55:35] -rw------- 1 ek ek 196095705 May 25 08:54 HITS.44871837._014546.pool.root.1
[2025-05-25 08:55:35] -rw------- 1 ek ek        95 May 25 08:55 pilot_heartbeat.json
[2025-05-25 08:55:35] -rw------- 1 ek ek      1040 May 25 08:55 memory_monitor_summary.json
[2025-05-25 08:55:35] -rw------- 1 ek ek    251941 May 25 08:55 log.44871837._014546.job.log.tgz.1
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek      8192 May 25 08:55 boinc_mmap_file
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek        27 May 25 08:55 wrapper_checkpoint.txt
[2025-05-25 08:55:35] -rw------- 1 ek ek      7709 May 25 08:55 heartbeat.json
[2025-05-25 08:55:35] -rw------- 1 ek ek      4611 May 25 08:55 pilotlog.txt
[2025-05-25 08:55:35] -rw------- 1 ek ek    474232 May 25 08:55 log.44871837._014546.job.log.1
[2025-05-25 08:55:35] -rw------- 1 ek ek       357 May 25 08:55 output.list
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek       620 May 25 08:55 runtime_log
[2025-05-25 08:55:35] -rw------- 1 ek ek    747520 May 25 08:55 result.tar.gz
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek      8854 May 25 08:55 runtime_log.err
[2025-05-25 08:55:35] -rw------- 1 ek ek       666 May 25 08:55 C42KDmwd0c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMVMKDmrlplvn.diag
[2025-05-25 08:55:35] -rw-rw-r-- 1 ek ek     21171 May 25 08:55 stderr.txt
[2025-05-25 08:55:35] HITS file was successfully produced:
[2025-05-25 08:55:35] -rw------- 1 ek ek 196095705 May 25 08:54 shared/HITS.pool.root.1
[2025-05-25 08:55:35]  *** Contents of shared directory: ***
[2025-05-25 08:55:35] total 413540
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek 226081633 May 25 07:33 ATLAS.root_0
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek    508876 May 25 07:33 input.tar.gz
[2025-05-25 08:55:35] -rw-r--r-- 2 ek ek     15093 May 25 07:33 start_atlas.sh
[2025-05-25 08:55:35] -rw------- 1 ek ek 196095705 May 25 08:54 HITS.pool.root.1
[2025-05-25 08:55:35] -rw------- 1 ek ek    747520 May 25 08:55 result.tar.gz
08:55:37 (959586): run_atlas exited; CPU time 18588.732246
08:55:37 (959586): called boinc_finish(0)

</stderr_txt>
]]>

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