Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:54:56 (1394226): wrapper (7.7.26015): starting
08:54:56 (1394226): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 08:54:56] Arguments: --nthreads 8
[2025-05-24 08:54:56] Threads: 8
[2025-05-24 08:54:56] Checking for CVMFS
[2025-05-24 08:54:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 08:54:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 08:54:57] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 08:54:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 08:54:59] 2.12.6.0 2000804 7440 267928 146367 0 472 26534983 32935937 26254 16776704 0 31529025 99.564 36513606 24190 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 08:54:59] CVMFS is ok
[2025-05-24 08:54:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 08:54:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 08:54:59] Further information can be found at the LHC@home message board.
[2025-05-24 08:54:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 08:54:59] Checking for apptainer binary...
[2025-05-24 08:54:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 08:54:59] Running /usr/bin/apptainer --version
[2025-05-24 08:54:59] apptainer version 1.4.1-1.el9
[2025-05-24 08:54:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 08:55:00] c6-12-27-3.aglt2.org
[2025-05-24 08:55:00] apptainer works
[2025-05-24 08:55:00] Set ATHENA_PROC_NUMBER=8
[2025-05-24 08:55:00] Set ATHENA_CORE_NUMBER=8
[2025-05-24 08:55:00] Starting ATLAS job with PandaID=6665326925
[2025-05-24 08:55:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:45:28 (3981170): wrapper (7.7.26015): starting
15:45:28 (3981170): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 15:45:28] Arguments: --nthreads 8
[2025-05-24 15:45:28] Threads: 8
[2025-05-24 15:45:28] This job has been restarted, cleaning up previous attempt
[2025-05-24 15:45:28] Checking for CVMFS
[2025-05-24 15:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 15:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 15:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 15:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 15:45:28] 2.12.6.0 2000804 7851 284296 146377 2 661 28459022 32935937 24057 16776704 0 33290614 99.583 37125825 24192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 15:45:28] CVMFS is ok
[2025-05-24 15:45:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 15:45:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 15:45:28] Further information can be found at the LHC@home message board.
[2025-05-24 15:45:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 15:45:28] Checking for apptainer binary...
[2025-05-24 15:45:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 15:45:28] Running /usr/bin/apptainer --version
[2025-05-24 15:45:28] apptainer version 1.4.1-1.el9
[2025-05-24 15:45:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 15:45:28] c6-12-27-3.aglt2.org
[2025-05-24 15:45:28] apptainer works
[2025-05-24 15:45:28] Set ATHENA_PROC_NUMBER=8
[2025-05-24 15:45:28] Set ATHENA_CORE_NUMBER=8
[2025-05-24 15:45:28] Starting ATLAS job with PandaID=6665326925
[2025-05-24 15:45:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 22:12:24]  *** The last 200 lines of the pilot log: ***
[2025-05-24 22:12:24] 2025-05-25 02:12:07,074 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6665326925/memory_monitor_summary.json (trf name=prmon)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,075 | INFO     | extracted standard info from prmon json
[2025-05-24 22:12:24] 2025-05-25 02:12:07,075 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 22:12:24] 2025-05-25 02:12:07,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 22:12:24] 2025-05-25 02:12:07,075 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 22:12:24] 2025-05-25 02:12:07,075 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 22:12:24] 2025-05-25 02:12:07,082 | INFO     | fitting pss+swap vs Time
[2025-05-24 22:12:24] 2025-05-25 02:12:07,083 | INFO     | sum of square deviations: 16880931571.034353
[2025-05-24 22:12:24] 2025-05-25 02:12:07,087 | INFO     | sum of deviations: 60768039432.11603
[2025-05-24 22:12:24] 2025-05-25 02:12:07,087 | INFO     | mean x: 1748127508.4327176
[2025-05-24 22:12:24] 2025-05-25 02:12:07,087 | INFO     | mean y: 2087674.926121372
[2025-05-24 22:12:24] 2025-05-25 02:12:07,087 | INFO     | -- intersect: -6290828146.561153
[2025-05-24 22:12:24] 2025-05-25 02:12:07,087 | INFO     | intersect: -6290828146.561153
[2025-05-24 22:12:24] 2025-05-25 02:12:07,088 | INFO     | chi2: 2.8498257866552015
[2025-05-24 22:12:24] 2025-05-25 02:12:07,088 | INFO     | sum of square deviations: 16221648297.58562
[2025-05-24 22:12:24] 2025-05-25 02:12:07,092 | INFO     | sum of deviations: 90195786054.02391
[2025-05-24 22:12:24] 2025-05-25 02:12:07,092 | INFO     | mean x: 1748127355.9385028
[2025-05-24 22:12:24] 2025-05-25 02:12:07,092 | INFO     | mean y: 2094432.435828877
[2025-05-24 22:12:24] 2025-05-25 02:12:07,092 | INFO     | -- intersect: -9717862386.926563
[2025-05-24 22:12:24] 2025-05-25 02:12:07,092 | INFO     | intersect: -9717862386.926563
[2025-05-24 22:12:24] 2025-05-25 02:12:07,093 | INFO     | chi2: 2.0296639627452144
[2025-05-24 22:12:24] 2025-05-25 02:12:07,093 | INFO     | current chi2=2.0296639627452144 (change=28.779367066946183 %)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,094 | INFO     | sum of square deviations: 15579760699.111158
[2025-05-24 22:12:24] 2025-05-25 02:12:07,097 | INFO     | sum of deviations: 96984597647.99994
[2025-05-24 22:12:24] 2025-05-25 02:12:07,097 | INFO     | mean x: 1748127203.4444444
[2025-05-24 22:12:24] 2025-05-25 02:12:07,097 | INFO     | mean y: 2096044.9024390243
[2025-05-24 22:12:24] 2025-05-25 02:12:07,097 | INFO     | -- intersect: -10880061694.09642
[2025-05-24 22:12:24] 2025-05-25 02:12:07,098 | INFO     | intersect: -10880061694.09642
[2025-05-24 22:12:24] 2025-05-25 02:12:07,098 | INFO     | chi2: 1.9963428965445753
[2025-05-24 22:12:24] 2025-05-25 02:12:07,098 | INFO     | current chi2=1.9963428965445753 (change=1.6417035929223893 %)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,098 | INFO     | right removable region: 368
[2025-05-24 22:12:24] 2025-05-25 02:12:07,099 | INFO     | sum of square deviations: 16221548257.585629
[2025-05-24 22:12:24] 2025-05-25 02:12:07,102 | INFO     | sum of deviations: -767961846.6817818
[2025-05-24 22:12:24] 2025-05-25 02:12:07,103 | INFO     | mean x: 1748127660.9385028
[2025-05-24 22:12:24] 2025-05-25 02:12:07,103 | INFO     | mean y: 2101857.3181818184
[2025-05-24 22:12:24] 2025-05-25 02:12:07,103 | INFO     | -- intersect: 84861858.11539608
[2025-05-24 22:12:24] 2025-05-25 02:12:07,103 | INFO     | intersect: 84861858.11539608
[2025-05-24 22:12:24] 2025-05-25 02:12:07,103 | INFO     | chi2: 1.1890233494052578
[2025-05-24 22:12:24] 2025-05-25 02:12:07,104 | INFO     | current chi2=1.1890233494052578 (change=58.27733207506706 %)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,104 | INFO     | sum of square deviations: 15579583432.997355
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | sum of deviations: -20778634561.178864
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | mean x: 1748127813.4417343
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | mean y: 2106601.1544715445
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | -- intersect: 2333600838.9789124
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | intersect: 2333600838.9789124
[2025-05-24 22:12:24] 2025-05-25 02:12:07,108 | INFO     | chi2: 1.026036286672233
[2025-05-24 22:12:24] 2025-05-25 02:12:07,109 | INFO     | current chi2=1.026036286672233 (change=13.707641890678591 %)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,109 | INFO     | left removable region: 20
[2025-05-24 22:12:24] 2025-05-25 02:12:07,109 | INFO     | sum of square deviations: 13068297118.169485
[2025-05-24 22:12:24] 2025-05-25 02:12:07,112 | INFO     | sum of deviations: 18732674096.32757
[2025-05-24 22:12:24] 2025-05-25 02:12:07,112 | INFO     | mean x: 1748127782.9511495
[2025-05-24 22:12:24] 2025-05-25 02:12:07,112 | INFO     | mean y: 2115840.4310344825
[2025-05-24 22:12:24] 2025-05-25 02:12:07,112 | INFO     | -- intersect: -2503727709.087721
[2025-05-24 22:12:24] 2025-05-25 02:12:07,113 | INFO     | intersect: -2503727709.087721
[2025-05-24 22:12:24] 2025-05-25 02:12:07,113 | INFO     | chi2: 0.1621376349544848
[2025-05-24 22:12:24] 2025-05-25 02:12:07,113 | INFO     | -- intersect: -2503727709.087721
[2025-05-24 22:12:24] 2025-05-25 02:12:07,113 | INFO     | current memory leak: 1.43 B/s (using 348 data points, chi2=0.16)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | ..............................
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | . Timing measurements:
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | . get job = 0 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | . initial setup = 2 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | . payload setup = 9 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,114 | INFO     | . stage-in = 0 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,115 | INFO     | . payload execution = 23111 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,115 | INFO     | . stage-out = 6 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,116 | INFO     | . log creation = 1 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,116 | INFO     | ..............................
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | 
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | job summary report
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | --------------------------------------------------
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | PanDA job id: 6665326925
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | task id: 44871837
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | errors: (none)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | pilot state: finished 
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | transexitcode: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | exeerrorcode: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:07,254 | INFO     | exeerrordiag: 
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | exitcode: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | exitmsg: OK
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | cpuconsumptiontime: 55999 s
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | nevents: 400
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | neventsw: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | pid: 4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | pgrp: 4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | corecount: 8
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | event service: False
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | sizes: {0: 2393568, 1: 2393767, 6: 2393973, 11: 2394001, 23126: 2428126, 23127: 2428125, 23134: 2437250, 23135: 2437306, 23168: 2437476}
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | --------------------------------------------------
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | 
[2025-05-24 22:12:24] 2025-05-25 02:12:07,255 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-24 22:12:24] 2025-05-25 02:12:07,365 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,365 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,365 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,365 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,366 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,367 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 22:12:24] 2025-05-25 02:12:07,367 | INFO     | job 6665326925 has completed (purged errors)
[2025-05-24 22:12:24] 2025-05-25 02:12:07,367 | INFO     | overall cleanup function is called
[2025-05-24 22:12:24] 2025-05-25 02:12:08,391 | INFO     | --- collectZombieJob: --- 10, [4044062]
[2025-05-24 22:12:24] 2025-05-25 02:12:08,391 | INFO     | zombie collector waiting for pid 4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:08,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 22:12:24] 2025-05-25 02:12:08,391 | INFO     | collected zombie processes
[2025-05-24 22:12:24] 2025-05-25 02:12:08,391 | INFO     | will attempt to kill all subprocesses of pid=4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:09,905 | INFO     | process IDs to be killed: [4044062] (in reverse order)
[2025-05-24 22:12:24] 2025-05-25 02:12:10,915 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 22:12:24] 2025-05-25 02:12:10,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 22:12:24] 2025-05-25 02:12:11,059 | INFO     | did not find any defunct processes belonging to 4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:11,176 | INFO     | did not find any defunct processes belonging to 4044062
[2025-05-24 22:12:24] 2025-05-25 02:12:11,176 | INFO     | ready for new job
[2025-05-24 22:12:24] 2025-05-25 02:12:11,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 22:12:24] 2025-05-25 02:12:11,178 | INFO     | **************************************
[2025-05-24 22:12:24] 2025-05-25 02:12:11,179 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 22:12:24] 2025-05-25 02:12:11,179 | INFO     | **************************************
[2025-05-24 22:12:24] 2025-05-25 02:12:11,179 | INFO     | 
[2025-05-24 22:12:24] 2025-05-25 02:12:11,201 | INFO     | architecture information:
[2025-05-24 22:12:24] 2025-05-25 02:12:11,201 | INFO     | executing command: cat /etc/os-release
[2025-05-24 22:12:24] 2025-05-25 02:12:11,262 | INFO     | cat /etc/os-release:
[2025-05-24 22:12:24] NAME="CentOS Linux"
[2025-05-24 22:12:24] VERSION="7 (Core)"
[2025-05-24 22:12:24] ID="centos"
[2025-05-24 22:12:24] ID_LIKE="rhel fedora"
[2025-05-24 22:12:24] VERSION_ID="7"
[2025-05-24 22:12:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 22:12:24] ANSI_COLOR="0;31"
[2025-05-24 22:12:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 22:12:24] HOME_URL="https://www.centos.org/"
[2025-05-24 22:12:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 22:12:24] 
[2025-05-24 22:12:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 22:12:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 22:12:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 22:12:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 22:12:24] 
[2025-05-24 22:12:24] 2025-05-25 02:12:11,263 | INFO     | **************************************
[2025-05-24 22:12:24] 2025-05-25 02:12:11,766 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-24 22:12:24] 2025-05-25 02:12:11,802 | INFO     | sufficient remaining disk space (93624205312 B)
[2025-05-24 22:12:24] 2025-05-25 02:12:11,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 22:12:24] 2025-05-25 02:12:11,803 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 22:12:24] 2025-05-25 02:12:11,803 | INFO     | update_server=False
[2025-05-24 22:12:24] 2025-05-25 02:12:11,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 22:12:24] 2025-05-25 02:12:11,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 22:12:24] 2025-05-25 02:12:11,804 | INFO     | aborting loop
[2025-05-24 22:12:24] 2025-05-25 02:12:11,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 22:12:24] 2025-05-25 02:12:11,808 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 22:12:24] 2025-05-25 02:12:11,808 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 22:12:24] 2025-05-25 02:12:11,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 22:12:24] 2025-05-25 02:12:11,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 22:12:24] 2025-05-25 02:12:12,035 | INFO     | all data control threads have been joined
[2025-05-24 22:12:24] 2025-05-25 02:12:12,159 | INFO     | all payload control threads have been joined
[2025-05-24 22:12:24] 2025-05-25 02:12:12,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 22:12:24] 2025-05-25 02:12:12,809 | INFO     | [job] retrieve thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:12,814 | INFO     | all job control threads have been joined
[2025-05-24 22:12:24] 2025-05-25 02:12:12,823 | INFO     | [job] job monitor thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,040 | INFO     | [data] control thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,165 | INFO     | [payload] control thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 22:12:24] 2025-05-25 02:12:13,253 | INFO     | [job] queue monitor thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,638 | INFO     | [payload] validate_post thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,820 | INFO     | [job] control thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,830 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:13,838 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:14,188 | INFO     | [payload] failed_post thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:14,211 | INFO     | [job] validate thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:14,211 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:14,254 | INFO     | [data] copytool_in thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:15,233 | INFO     | [data] copytool_out thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:15,824 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 22:12:24] 2025-05-25 02:12:17,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140321289217856)>', '<ExcThread(monitor, started 140320641627904)>']
[2025-05-24 22:12:24] 2025-05-25 02:12:17,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 22:12:24] 2025-05-25 02:12:17,851 | INFO     | [monitor] control thread has ended
[2025-05-24 22:12:24] 2025-05-25 02:12:22,071 | INFO     | all workflow threads have been joined
[2025-05-24 22:12:24] 2025-05-25 02:12:22,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 22:12:24] 2025-05-25 02:12:22,071 | INFO     | traces error code: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:22,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 22:12:24] 2025-05-25 02:12:23,748 [wrapper] ==== pilot stdout END ====
[2025-05-24 22:12:24] 2025-05-25 02:12:23,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 22:12:24] 2025-05-25 02:12:23,779 [wrapper] pilotpid: 4003648
[2025-05-24 22:12:24] 2025-05-25 02:12:23,806 [wrapper] Pilot exit status: 0
[2025-05-24 22:12:24] 2025-05-25 02:12:23,902 [wrapper] pandaids: 6665326925 6665326925
[2025-05-24 22:12:24] 2025-05-25 02:12:24,495 [wrapper] cleanup supervisor_pilot 2439307 4003650
[2025-05-24 22:12:24] 2025-05-25 02:12:24,522 [wrapper] Test setup, not cleaning
[2025-05-24 22:12:24] 2025-05-25 02:12:24,536 [wrapper] apfmon messages muted
[2025-05-24 22:12:24] 2025-05-25 02:12:24,556 [wrapper] ==== wrapper stdout END ====
[2025-05-24 22:12:24] 2025-05-25 02:12:24,579 [wrapper] ==== wrapper stderr END ====
[2025-05-24 22:12:24]  *** Error codes and diagnostics ***
[2025-05-24 22:12:24]     "exeErrorCode": 0,
[2025-05-24 22:12:24]     "exeErrorDiag": "",
[2025-05-24 22:12:24]     "pilotErrorCode": 0,
[2025-05-24 22:12:24]     "pilotErrorDiag": "",
[2025-05-24 22:12:24]  *** Listing of results directory ***
[2025-05-24 22:12:24] total 636472
[2025-05-24 22:12:24] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas    495897 May 24 04:48 pilot3.tar.gz
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas      5111 May 24 05:00 queuedata.json
[2025-05-24 22:12:24] -rwx------. 1 boincer umatlas     37140 May 24 05:00 runpilot2-wrapper.sh
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas       100 May 24 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 22:12:24] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 08:54 run_atlas
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas       105 May 24 08:54 job.xml
[2025-05-24 22:12:24] -rw-r--r--. 3 boincer umatlas 222942081 May 24 08:54 EVNT.44871834._000534.pool.root.1
[2025-05-24 22:12:24] -rw-r--r--. 3 boincer umatlas 222942081 May 24 08:54 ATLAS.root_0
[2025-05-24 22:12:24] -rw-r--r--. 2 boincer umatlas    508877 May 24 08:54 input.tar.gz
[2025-05-24 22:12:24] -rw-r--r--. 2 boincer umatlas     15093 May 24 08:54 start_atlas.sh
[2025-05-24 22:12:24] drwxrwx--x. 2 boincer umatlas      4096 May 24 08:54 shared
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas         0 May 24 08:54 boinc_lockfile
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas      2558 May 24 15:45 pandaJob.out
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas    988564 May 24 15:45 agis_schedconf.cvmfs.json
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas 197610298 May 24 22:10 HITS.44871837._013351.pool.root.1
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas       532 May 24 22:10 boinc_task_state.xml
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas      6861 May 24 22:10 init_data.xml
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas      1043 May 24 22:11 memory_monitor_summary.json
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas   1596740 May 24 22:11 agis_ddmendpoints.agis.ALL.json
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas    476349 May 24 22:11 log.44871837._013351.job.log.tgz.1
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas        96 May 24 22:12 pilot_heartbeat.json
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas      7726 May 24 22:12 heartbeat.json
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas      4476 May 24 22:12 pilotlog.txt
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas      8192 May 24 22:12 boinc_mmap_file
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas        29 May 24 22:12 wrapper_checkpoint.txt
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas   1729804 May 24 22:12 log.44871837._013351.job.log.1
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas       357 May 24 22:12 output.list
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas       620 May 24 22:12 runtime_log
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas   2222080 May 24 22:12 result.tar.gz
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas      8755 May 24 22:12 runtime_log.err
[2025-05-24 22:12:24] -rw-------. 1 boincer umatlas       784 May 24 22:12 RTtKDmMvzc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdnQKDmI0DlMn.diag
[2025-05-24 22:12:24] -rw-r--r--. 1 boincer umatlas     23138 May 24 22:12 stderr.txt
[2025-05-24 22:12:25] HITS file was successfully produced:
[2025-05-24 22:12:25] -rw-------. 1 boincer umatlas 197610298 May 24 22:10 shared/HITS.pool.root.1
[2025-05-24 22:12:25]  *** Contents of shared directory: ***
[2025-05-24 22:12:25] total 413396
[2025-05-24 22:12:25] -rw-r--r--. 3 boincer umatlas 222942081 May 24 08:54 ATLAS.root_0
[2025-05-24 22:12:25] -rw-r--r--. 2 boincer umatlas    508877 May 24 08:54 input.tar.gz
[2025-05-24 22:12:25] -rw-r--r--. 2 boincer umatlas     15093 May 24 08:54 start_atlas.sh
[2025-05-24 22:12:25] -rw-------. 1 boincer umatlas 197610298 May 24 22:10 HITS.pool.root.1
[2025-05-24 22:12:25] -rw-------. 1 boincer umatlas   2222080 May 24 22:12 result.tar.gz
22:12:26 (3981170): run_atlas exited; CPU time 57234.224742
22:12:26 (3981170): called boinc_finish(0)

</stderr_txt>
]]>

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