Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:07:50 (3878753): wrapper (7.7.26015): starting
13:07:50 (3878753): wrapper: running run_atlas (--nthreads 9)
[2025-05-24 13:07:50] Arguments: --nthreads 9
[2025-05-24 13:07:50] Threads: 9
[2025-05-24 13:07:50] Checking for CVMFS
[2025-05-24 13:07:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 13:07:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 13:07:52] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 13:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 13:07:53] 2.12.6.0 3369999 7711 262752 146373 0 264 25490124 32935936 14432 16776704 0 18784377 99.293 34328984 38211 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 13:07:53] CVMFS is ok
[2025-05-24 13:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 13:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 13:07:53] Further information can be found at the LHC@home message board.
[2025-05-24 13:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 13:07:53] Checking for apptainer binary...
[2025-05-24 13:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 13:07:53] Running /usr/bin/apptainer --version
[2025-05-24 13:07:53] apptainer version 1.4.1-1.el9
[2025-05-24 13:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 13:07:54] c6-2-29-1.aglt2.org
[2025-05-24 13:07:54] apptainer works
[2025-05-24 13:07:54] Set ATHENA_PROC_NUMBER=9
[2025-05-24 13:07:54] Set ATHENA_CORE_NUMBER=9
[2025-05-24 13:07:54] Starting ATLAS job with PandaID=6665380106
[2025-05-24 13:07:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 17:58:16]  *** The last 200 lines of the pilot log: ***
[2025-05-24 17:58:17] 2025-05-24 21:57:56,765 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6665380106/memory_monitor_summary.json (trf name=prmon)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,765 | INFO     | extracted standard info from prmon json
[2025-05-24 17:58:17] 2025-05-24 21:57:56,765 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 17:58:17] 2025-05-24 21:57:56,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 17:58:17] 2025-05-24 21:57:56,781 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 17:58:17] 2025-05-24 21:57:56,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 17:58:17] 2025-05-24 21:57:56,797 | INFO     | fitting pss+swap vs Time
[2025-05-24 17:58:17] 2025-05-24 21:57:56,798 | INFO     | sum of square deviations: 6953831141.304966
[2025-05-24 17:58:17] 2025-05-24 21:57:56,799 | INFO     | sum of deviations: 51828292478.602875
[2025-05-24 17:58:17] 2025-05-24 21:57:56,800 | INFO     | mean x: 1748115240.0496454
[2025-05-24 17:58:17] 2025-05-24 21:57:56,800 | INFO     | mean y: 2150670.0283687944
[2025-05-24 17:58:17] 2025-05-24 21:57:56,816 | INFO     | -- intersect: -13026901388.68953
[2025-05-24 17:58:17] 2025-05-24 21:57:56,816 | INFO     | intersect: -13026901388.68953
[2025-05-24 17:58:17] 2025-05-24 21:57:56,817 | INFO     | chi2: 4.427213193526647
[2025-05-24 17:58:17] 2025-05-24 21:57:56,817 | INFO     | sum of square deviations: 6590513462.26718
[2025-05-24 17:58:17] 2025-05-24 21:57:56,819 | INFO     | sum of deviations: 77370736173.35373
[2025-05-24 17:58:17] 2025-05-24 21:57:56,819 | INFO     | mean x: 1748115087.5595667
[2025-05-24 17:58:17] 2025-05-24 21:57:56,819 | INFO     | mean y: 2161301.2815884477
[2025-05-24 17:58:17] 2025-05-24 21:57:56,819 | INFO     | -- intersect: -20520208012.520325
[2025-05-24 17:58:17] 2025-05-24 21:57:56,820 | INFO     | intersect: -20520208012.520325
[2025-05-24 17:58:17] 2025-05-24 21:57:56,824 | INFO     | chi2: 3.6528089077848445
[2025-05-24 17:58:17] 2025-05-24 21:57:56,824 | INFO     | current chi2=3.6528089077848445 (change=17.491913126616897 %)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,824 | INFO     | right removable region: 276
[2025-05-24 17:58:17] 2025-05-24 21:57:56,825 | INFO     | sum of square deviations: 6590435992.382662
[2025-05-24 17:58:17] 2025-05-24 21:57:56,827 | INFO     | sum of deviations: -8881965780.285202
[2025-05-24 17:58:17] 2025-05-24 21:57:56,827 | INFO     | mean x: 1748115392.5559566
[2025-05-24 17:58:17] 2025-05-24 21:57:56,827 | INFO     | mean y: 2176070.5667870035
[2025-05-24 17:58:17] 2025-05-24 21:57:56,827 | INFO     | -- intersect: 2358120520.1628175
[2025-05-24 17:58:17] 2025-05-24 21:57:56,827 | INFO     | intersect: 2358120520.1628175
[2025-05-24 17:58:17] 2025-05-24 21:57:56,828 | INFO     | chi2: 1.9219989077743098
[2025-05-24 17:58:17] 2025-05-24 21:57:56,828 | INFO     | current chi2=1.9219989077743098 (change=56.58670988366665 %)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,832 | INFO     | sum of square deviations: 6239924683.9375
[2025-05-24 17:58:17] 2025-05-24 21:57:56,834 | INFO     | sum of deviations: -43977148369.4375
[2025-05-24 17:58:17] 2025-05-24 21:57:56,834 | INFO     | mean x: 1748115545.0625
[2025-05-24 17:58:17] 2025-05-24 21:57:56,834 | INFO     | mean y: 2191344.6727941176
[2025-05-24 17:58:17] 2025-05-24 21:57:56,834 | INFO     | -- intersect: 12322394005.135496
[2025-05-24 17:58:17] 2025-05-24 21:57:56,835 | INFO     | intersect: 12322394005.135496
[2025-05-24 17:58:17] 2025-05-24 21:57:56,835 | INFO     | chi2: 1.109597773897402
[2025-05-24 17:58:17] 2025-05-24 21:57:56,835 | INFO     | current chi2=1.109597773897402 (change=42.26855335821573 %)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,835 | INFO     | sum of square deviations: 5902114917.850212
[2025-05-24 17:58:17] 2025-05-24 21:57:56,841 | INFO     | sum of deviations: -57513331861.34085
[2025-05-24 17:58:17] 2025-05-24 21:57:56,841 | INFO     | mean x: 1748115697.5580525
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | mean y: 2197445.344569288
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | -- intersect: 17036762113.274881
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | intersect: 17036762113.274881
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | chi2: 0.9457585083817581
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | current chi2=0.9457585083817581 (change=14.765644756132435 %)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | left removable region: 30
[2025-05-24 17:58:17] 2025-05-24 21:57:56,842 | INFO     | sum of square deviations: 4616198524.085342
[2025-05-24 17:58:17] 2025-05-24 21:57:56,844 | INFO     | sum of deviations: -25403637412.41462
[2025-05-24 17:58:17] 2025-05-24 21:57:56,844 | INFO     | mean x: 1748115972.0609756
[2025-05-24 17:58:17] 2025-05-24 21:57:56,844 | INFO     | mean y: 2207952.2276422763
[2025-05-24 17:58:17] 2025-05-24 21:57:56,848 | INFO     | -- intersect: 9622354069.727407
[2025-05-24 17:58:17] 2025-05-24 21:57:56,848 | INFO     | intersect: 9622354069.727407
[2025-05-24 17:58:17] 2025-05-24 21:57:56,849 | INFO     | chi2: 0.16820048192369033
[2025-05-24 17:58:17] 2025-05-24 21:57:56,849 | INFO     | -- intersect: 9622354069.727407
[2025-05-24 17:58:17] 2025-05-24 21:57:56,849 | INFO     | current memory leak: -5.50 B/s (using 246 data points, chi2=0.17)
[2025-05-24 17:58:17] 2025-05-24 21:57:56,849 | INFO     | ..............................
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . Timing measurements:
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . get job = 0 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . initial setup = 4 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . payload setup = 27 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . stage-in = 0 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . payload execution = 17203 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . stage-out = 7 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | . log creation = 1 s
[2025-05-24 17:58:17] 2025-05-24 21:57:56,850 | INFO     | ..............................
[2025-05-24 17:58:17] 2025-05-24 21:57:57,140 | INFO     | 
[2025-05-24 17:58:17] 2025-05-24 21:57:57,140 | INFO     | job summary report
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | --------------------------------------------------
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | PanDA job id: 6665380106
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | task id: 44871837
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | errors: (none)
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | pilot state: finished 
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | transexitcode: 0
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | exeerrorcode: 0
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | exeerrordiag: 
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | exitcode: 0
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | exitmsg: OK
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | cpuconsumptiontime: 50167 s
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | nevents: 400
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | neventsw: 0
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | pid: 3892944
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | pgrp: 3892944
[2025-05-24 17:58:17] 2025-05-24 21:57:57,141 | INFO     | corecount: 9
[2025-05-24 17:58:17] 2025-05-24 21:57:57,142 | INFO     | event service: False
[2025-05-24 17:58:17] 2025-05-24 21:57:57,142 | INFO     | sizes: {0: 2392911, 1: 2393596, 2: 2393624, 3: 2393823, 4: 2393823, 15: 2393851, 26: 2394007, 35: 2394241, 37: 2394269, 17237: 2425763, 17238: 2425762, 17246: 2435
[2025-05-24 17:58:17] 2025-05-24 21:57:57,142 | INFO     | --------------------------------------------------
[2025-05-24 17:58:17] 2025-05-24 21:57:57,142 | INFO     | 
[2025-05-24 17:58:17] 2025-05-24 21:57:57,142 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | job 6665380106 has completed (purged errors)
[2025-05-24 17:58:17] 2025-05-24 21:57:57,310 | INFO     | overall cleanup function is called
[2025-05-24 17:58:17] 2025-05-24 21:57:58,323 | INFO     | --- collectZombieJob: --- 10, [3892944]
[2025-05-24 17:58:17] 2025-05-24 21:57:58,328 | INFO     | zombie collector waiting for pid 3892944
[2025-05-24 17:58:17] 2025-05-24 21:57:58,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 17:58:17] 2025-05-24 21:57:58,328 | INFO     | collected zombie processes
[2025-05-24 17:58:17] 2025-05-24 21:57:58,328 | INFO     | will attempt to kill all subprocesses of pid=3892944
[2025-05-24 17:58:17] 2025-05-24 21:58:00,792 | INFO     | process IDs to be killed: [3892944] (in reverse order)
[2025-05-24 17:58:17] 2025-05-24 21:58:00,992 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 17:58:17] 2025-05-24 21:58:00,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 17:58:17] 2025-05-24 21:58:01,087 | INFO     | did not find any defunct processes belonging to 3892944
[2025-05-24 17:58:17] 2025-05-24 21:58:01,223 | INFO     | did not find any defunct processes belonging to 3892944
[2025-05-24 17:58:17] 2025-05-24 21:58:01,223 | INFO     | ready for new job
[2025-05-24 17:58:17] 2025-05-24 21:58:01,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 17:58:17] 2025-05-24 21:58:01,254 | INFO     | **************************************
[2025-05-24 17:58:17] 2025-05-24 21:58:01,255 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 17:58:17] 2025-05-24 21:58:01,255 | INFO     | **************************************
[2025-05-24 17:58:17] 2025-05-24 21:58:01,255 | INFO     | 
[2025-05-24 17:58:17] 2025-05-24 21:58:01,272 | INFO     | architecture information:
[2025-05-24 17:58:17] 2025-05-24 21:58:01,320 | INFO     | executing command: cat /etc/os-release
[2025-05-24 17:58:17] 2025-05-24 21:58:01,504 | INFO     | cat /etc/os-release:
[2025-05-24 17:58:17] NAME="CentOS Linux"
[2025-05-24 17:58:17] VERSION="7 (Core)"
[2025-05-24 17:58:17] ID="centos"
[2025-05-24 17:58:17] ID_LIKE="rhel fedora"
[2025-05-24 17:58:17] VERSION_ID="7"
[2025-05-24 17:58:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 17:58:17] ANSI_COLOR="0;31"
[2025-05-24 17:58:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 17:58:17] HOME_URL="https://www.centos.org/"
[2025-05-24 17:58:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 17:58:17] 
[2025-05-24 17:58:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 17:58:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 17:58:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 17:58:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 17:58:17] 
[2025-05-24 17:58:17] 2025-05-24 21:58:01,505 | INFO     | **************************************
[2025-05-24 17:58:17] 2025-05-24 21:58:02,008 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-24 17:58:17] 2025-05-24 21:58:02,090 | INFO     | sufficient remaining disk space (75205967872 B)
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | INFO     | update_server=False
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | INFO     | aborting loop
[2025-05-24 17:58:17] 2025-05-24 21:58:02,091 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 17:58:17] 2025-05-24 21:58:02,092 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 17:58:17] 2025-05-24 21:58:02,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 17:58:17] 2025-05-24 21:58:02,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 17:58:17] 2025-05-24 21:58:02,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 17:58:17] 2025-05-24 21:58:02,419 | INFO     | all payload control threads have been joined
[2025-05-24 17:58:17] 2025-05-24 21:58:02,555 | INFO     | all data control threads have been joined
[2025-05-24 17:58:17] 2025-05-24 21:58:03,097 | INFO     | [job] retrieve thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,098 | INFO     | [job] job monitor thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,212 | INFO     | [job] queue monitor thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,214 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 17:58:17] 2025-05-24 21:58:03,217 | INFO     | [payload] failed_post thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,457 | INFO     | [payload] control thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,588 | INFO     | [data] control thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,664 | INFO     | [job] validate thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,665 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:03,783 | INFO     | all job control threads have been joined
[2025-05-24 17:58:17] 2025-05-24 21:58:03,815 | INFO     | [payload] validate_post thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:04,081 | INFO     | [data] copytool_in thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:04,231 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:04,268 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:04,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 17:58:17] 2025-05-24 21:58:04,788 | INFO     | [job] control thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:05,221 | INFO     | [data] copytool_out thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:08,792 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 17:58:17] 2025-05-24 21:58:08,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324667537216)>', '<ExcThread(monitor, started 140324315830016)>']
[2025-05-24 17:58:17] 2025-05-24 21:58:09,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 17:58:17] 2025-05-24 21:58:09,204 | INFO     | [monitor] control thread has ended
[2025-05-24 17:58:17] 2025-05-24 21:58:13,968 | INFO     | all workflow threads have been joined
[2025-05-24 17:58:17] 2025-05-24 21:58:13,969 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 17:58:17] 2025-05-24 21:58:13,969 | INFO     | traces error code: 0
[2025-05-24 17:58:17] 2025-05-24 21:58:13,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 17:58:17] 2025-05-24 21:58:15,589 [wrapper] ==== pilot stdout END ====
[2025-05-24 17:58:17] 2025-05-24 21:58:15,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 17:58:17] 2025-05-24 21:58:15,714 [wrapper] pilotpid: 3882929
[2025-05-24 17:58:17] 2025-05-24 21:58:15,755 [wrapper] Pilot exit status: 0
[2025-05-24 17:58:17] 2025-05-24 21:58:15,856 [wrapper] pandaids: 6665380106
[2025-05-24 17:58:17] 2025-05-24 21:58:15,932 [wrapper] cleanup supervisor_pilot  855508 3882930
[2025-05-24 17:58:17] 2025-05-24 21:58:15,936 [wrapper] Test setup, not cleaning
[2025-05-24 17:58:17] 2025-05-24 21:58:15,965 [wrapper] apfmon messages muted
[2025-05-24 17:58:17] 2025-05-24 21:58:16,022 [wrapper] ==== wrapper stdout END ====
[2025-05-24 17:58:17] 2025-05-24 21:58:16,036 [wrapper] ==== wrapper stderr END ====
[2025-05-24 17:58:17]  *** Error codes and diagnostics ***
[2025-05-24 17:58:17]     "exeErrorCode": 0,
[2025-05-24 17:58:17]     "exeErrorDiag": "",
[2025-05-24 17:58:17]     "pilotErrorCode": 0,
[2025-05-24 17:58:17]     "pilotErrorDiag": "",
[2025-05-24 17:58:17]  *** Listing of results directory ***
[2025-05-24 17:58:17] total 418212
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas    495897 May 24 06:13 pilot3.tar.gz
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas      5111 May 24 06:33 queuedata.json
[2025-05-24 17:58:17] -rwx------. 1 boincer umatlas     37140 May 24 06:36 runpilot2-wrapper.sh
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas       100 May 24 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 17:58:17] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 13:07 run_atlas
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas       105 May 24 13:07 job.xml
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas 224301370 May 24 13:07 EVNT.44871834._000629.pool.root.1
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas     15093 May 24 13:07 start_atlas.sh
[2025-05-24 17:58:17] drwxrwx--x. 2 boincer umatlas      4096 May 24 13:07 shared
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas    508884 May 24 13:07 input.tar.gz
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas         0 May 24 13:07 boinc_lockfile
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas      2558 May 24 13:07 pandaJob.out
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas    988572 May 24 13:08 agis_schedconf.cvmfs.json
[2025-05-24 17:58:17] drwx------. 4 boincer umatlas      4096 May 24 13:09 pilot3
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas      6842 May 24 17:54 init_data.xml
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas 196553500 May 24 17:56 HITS.44871837._015710.pool.root.1
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas       531 May 24 17:56 boinc_task_state.xml
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas      1042 May 24 17:57 memory_monitor_summary.json
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas   1596740 May 24 17:57 agis_ddmendpoints.agis.ALL.json
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas    421279 May 24 17:57 log.44871837._015710.job.log.tgz.1
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas        95 May 24 17:57 pilot_heartbeat.json
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas      7725 May 24 17:57 heartbeat.json
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas      8192 May 24 17:58 boinc_mmap_file
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas        28 May 24 17:58 wrapper_checkpoint.txt
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas      4476 May 24 17:58 pilotlog.txt
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas   1362028 May 24 17:58 log.44871837._015710.job.log.1
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas       357 May 24 17:58 output.list
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas       620 May 24 17:58 runtime_log
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas   1802240 May 24 17:58 result.tar.gz
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas      8665 May 24 17:58 runtime_log.err
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas       657 May 24 17:58 hNnNDmjP1c7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDCRKDmTV5tOn.diag
[2025-05-24 17:58:17] -rw-r--r--. 1 boincer umatlas     20743 May 24 17:58 stderr.txt
[2025-05-24 17:58:17] HITS file was successfully produced:
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas 196553500 May 24 17:56 shared/HITS.pool.root.1
[2025-05-24 17:58:17]  *** Contents of shared directory: ***
[2025-05-24 17:58:17] total 413276
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas 224301370 May 24 13:07 ATLAS.root_0
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas     15093 May 24 13:07 start_atlas.sh
[2025-05-24 17:58:17] -rw-r--r--. 2 boincer umatlas    508884 May 24 13:07 input.tar.gz
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas 196553500 May 24 17:56 HITS.pool.root.1
[2025-05-24 17:58:17] -rw-------. 1 boincer umatlas   1802240 May 24 17:58 result.tar.gz
17:58:19 (3878753): run_atlas exited; CPU time 50724.284559
17:58:19 (3878753): called boinc_finish(0)

</stderr_txt>
]]>

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